RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 KCNIP1Q9NZI2 227 aa7.33□□□□□ -1.24
VPS35-206ENST00000565228 COMMD3Q9UBI1 195 aa7.33□□□□□ -1.24
VPS35-206ENST00000565228 ANAPC10Q9UM13 185 aa7.33□□□□□ -1.24
VPS35-206ENST00000565228 VWFP04275 2813 aa7.33□□□□□ -1.24
VPS35-206ENST00000565228 TNCP24821 2201 aa7.32□□□□□ -1.24
VPS35-206ENST00000565228 CLPSL1A2RUU4 121 aa7.32□□□□□ -1.24
VPS35-206ENST00000565228 OOSP1A8MZH6 123 aa7.32□□□□□ -1.24
VPS35-206ENST00000565228 H3BUI4 141 aa7.32□□□□□ -1.24
VPS35-206ENST00000565228 BET1O15155 118 aa7.32□□□□□ -1.24
VPS35-206ENST00000565228 XRCC3O43542 346 aa7.32□□□□□ -1.24
VPS35-206ENST00000565228 LANCL1O43813 399 aa7.32□□□□□ -1.24
VPS35-206ENST00000565228 GSTP1P09211 210 aaKnown RBP7.32□□□□□ -1.24
VPS35-206ENST00000565228 FOXL1Q12952 345 aa7.32□□□□□ -1.24
VPS35-206ENST00000565228 LSAMPQ13449 338 aa7.32□□□□□ -1.24
VPS35-206ENST00000565228 ARFRP1Q13795 201 aa7.32□□□□□ -1.24
VPS35-206ENST00000565228 SRSF7Q16629 238 aaKnown RBP eCLIP7.32□□□□□ -1.24
VPS35-206ENST00000565228 UBE2NLQ5JXB2 153 aa7.32□□□□□ -1.24
VPS35-206ENST00000565228 C12orf54Q6X4T0 127 aa7.32□□□□□ -1.24
VPS35-206ENST00000565228 MOB1BQ7L9L4 216 aa7.32□□□□□ -1.24
VPS35-206ENST00000565228 MOB3BQ86TA1 216 aa7.32□□□□□ -1.24
VPS35-206ENST00000565228 H1FOOQ8IZA3 346 aaPredicted RBP7.32□□□□□ -1.24
VPS35-206ENST00000565228 Q8N9W7 124 aa7.32□□□□□ -1.24
VPS35-206ENST00000565228 ZNF383Q8NA42 475 aa7.32□□□□□ -1.24
VPS35-206ENST00000565228 DRAXINQ8NBI3 349 aaPredicted RBP7.32□□□□□ -1.24
VPS35-206ENST00000565228 OR4A4PQ8NGN8 299 aa7.32□□□□□ -1.24
VPS35-206ENST00000565228 CAPSLQ8WWF8 208 aa7.32□□□□□ -1.24
VPS35-206ENST00000565228 ISOC1Q96CN7 298 aa7.32□□□□□ -1.24
VPS35-206ENST00000565228 SLC25A33Q9BSK2 321 aa7.32□□□□□ -1.24
VPS35-206ENST00000565228 ZNF747Q9BV97 191 aa7.32□□□□□ -1.24
VPS35-206ENST00000565228 SLIRPQ9GZT3 109 aaKnown RBP7.32□□□□□ -1.24
VPS35-206ENST00000565228 J3QRK9 145 aa7.31□□□□□ -1.24
VPS35-206ENST00000565228 ITGB1BP1O14713 200 aa7.31□□□□□ -1.24
VPS35-206ENST00000565228 OR2F2O95006 317 aa7.31□□□□□ -1.24
VPS35-206ENST00000565228 GAPDHP04406 335 aaKnown RBP7.31□□□□□ -1.24
VPS35-206ENST00000565228 NFYAP23511 347 aaPredicted RBP7.31□□□□□ -1.24
VPS35-206ENST00000565228 DTYMKP23919 212 aa7.31□□□□□ -1.24
VPS35-206ENST00000565228 KIR2DS4P43632 304 aa7.31□□□□□ -1.24
VPS35-206ENST00000565228 RAB7AP51149 207 aa7.31□□□□□ -1.24
VPS35-206ENST00000565228 BRWD1-AS2P59051 145 aa7.31□□□□□ -1.24
VPS35-206ENST00000565228 RPL15P61313 204 aaKnown RBP7.31□□□□□ -1.24
VPS35-206ENST00000565228 EIF4EBP1Q13541 118 aaPredicted RBP7.31□□□□□ -1.24
VPS35-206ENST00000565228 PNLIPRP3Q17RR3 467 aa7.31□□□□□ -1.24
VPS35-206ENST00000565228 TMEM30BQ3MIR4 351 aa7.31□□□□□ -1.24
VPS35-206ENST00000565228 TCTEX1D4Q5JR98 221 aa7.31□□□□□ -1.24
VPS35-206ENST00000565228 STEAP3Q658P3 488 aa7.31□□□□□ -1.24
VPS35-206ENST00000565228 HOGA1Q86XE5 327 aa7.31□□□□□ -1.24
VPS35-206ENST00000565228 THNSL2Q86YJ6 484 aa7.31□□□□□ -1.24
VPS35-206ENST00000565228 LYSMD2Q8IV50 215 aa7.31□□□□□ -1.24
VPS35-206ENST00000565228 LAX1Q8IWV1 398 aa7.31□□□□□ -1.24
VPS35-206ENST00000565228 OR8H3Q8N146 312 aa7.31□□□□□ -1.24
VPS35-206ENST00000565228 C5orf56Q8N8D9 126 aa7.31□□□□□ -1.24
VPS35-206ENST00000565228 DNAH3Q8TD57 4116 aa7.31□□□□□ -1.24
VPS35-206ENST00000565228 ABHD1Q96SE0 405 aa7.31□□□□□ -1.24
VPS35-206ENST00000565228 GPHA2Q96T91 129 aa7.31□□□□□ -1.24
VPS35-206ENST00000565228 CITED1Q99966 193 aa7.31□□□□□ -1.24
VPS35-206ENST00000565228 WNT10AQ9GZT5 417 aa7.31□□□□□ -1.24
VPS35-206ENST00000565228 ABCB10Q9NRK6 738 aa7.31□□□□□ -1.24
VPS35-206ENST00000565228 SDHAF2Q9NX18 166 aa7.31□□□□□ -1.24
VPS35-206ENST00000565228 AMMECR1Q9Y4X0 333 aaPredicted RBP7.31□□□□□ -1.24
VPS35-206ENST00000565228 RNF114Q9Y508 228 aa7.31□□□□□ -1.24
VPS35-206ENST00000565228 BTBD17A6NE02 478 aa7.3□□□□□ -1.24
VPS35-206ENST00000565228 POM121CA8CG34 1229 aa7.3□□□□□ -1.24
VPS35-206ENST00000565228 ADARB2-AS1A8MUL3 147 aa7.3□□□□□ -1.24
VPS35-206ENST00000565228 H0YJW9 148 aa7.3□□□□□ -1.24
VPS35-206ENST00000565228 TUSC2O75896 110 aa7.3□□□□□ -1.24
VPS35-206ENST00000565228 OR8U9P0C7N5 309 aa7.3□□□□□ -1.24
VPS35-206ENST00000565228 ZNF182P17025 639 aaPredicted RBP7.3□□□□□ -1.24
VPS35-206ENST00000565228 ZBTB25P24278 435 aa7.3□□□□□ -1.24
VPS35-206ENST00000565228 CEACAM3P40198 252 aa7.3□□□□□ -1.24
VPS35-206ENST00000565228 RORCP51449 518 aa7.3□□□□□ -1.24
VPS35-206ENST00000565228 TMBIM6P55061 237 aa7.3□□□□□ -1.24
VPS35-206ENST00000565228 GNG2P59768 71 aa7.3□□□□□ -1.24
VPS35-206ENST00000565228 RPL30P62888 115 aaKnown RBP7.3□□□□□ -1.24
VPS35-206ENST00000565228 MRGPRG-AS1Q2M3A8 158 aa7.3□□□□□ -1.24
VPS35-206ENST00000565228 ZNF660Q6AZW8 331 aaPredicted RBP7.3□□□□□ -1.24
VPS35-206ENST00000565228 C11orf88Q6PI97 169 aa7.3□□□□□ -1.24
VPS35-206ENST00000565228 TGIF2LXQ8IUE1 241 aa7.3□□□□□ -1.24
VPS35-206ENST00000565228 CROCCP3Q8IVE0 287 aa7.3□□□□□ -1.24
VPS35-206ENST00000565228 OR2AK2Q8NG84 335 aa7.3□□□□□ -1.24
VPS35-206ENST00000565228 OR8U1Q8NH10 309 aa7.3□□□□□ -1.24
VPS35-206ENST00000565228 OR4F5Q8NH21 305 aa7.3□□□□□ -1.24
VPS35-206ENST00000565228 HSPB9Q9BQS6 159 aa7.3□□□□□ -1.24
VPS35-206ENST00000565228 ANXA10Q9UJ72 324 aa7.3□□□□□ -1.24
VPS35-206ENST00000565228 KMT2CQ8NEZ4 4911 aaKnown RBP7.3□□□□□ -1.24
VPS35-206ENST00000565228 A0A0A6YYH2 397 aa7.29□□□□□ -1.24
VPS35-206ENST00000565228 A6NJ64 397 aa7.29□□□□□ -1.24
VPS35-206ENST00000565228 LINC00473A8K010 186 aa7.29□□□□□ -1.24
VPS35-206ENST00000565228 TMEM127O75204 238 aa7.29□□□□□ -1.24
VPS35-206ENST00000565228 APOA1P02647 267 aa7.29□□□□□ -1.24
VPS35-206ENST00000565228 IGKV1-16P04430 117 aa7.29□□□□□ -1.24
VPS35-206ENST00000565228 CRYBA1P05813 215 aa7.29□□□□□ -1.24
VPS35-206ENST00000565228 LPLP06858 475 aa7.29□□□□□ -1.24
VPS35-206ENST00000565228 TMEM11P17152 192 aa7.29□□□□□ -1.24
VPS35-206ENST00000565228 NAT1P18440 290 aa7.29□□□□□ -1.24
VPS35-206ENST00000565228 CD1BP29016 333 aa7.29□□□□□ -1.24
VPS35-206ENST00000565228 BRS3P32247 399 aa7.29□□□□□ -1.24
VPS35-206ENST00000565228 SSBP2P81877 361 aaPredicted RBP7.29□□□□□ -1.24
VPS35-206ENST00000565228 ABCA11PQ4W5N1 156 aa7.29□□□□□ -1.24
VPS35-206ENST00000565228 RNASE12Q5GAN4 147 aaKnown RBP7.29□□□□□ -1.24
VPS35-206ENST00000565228 FAM131AQ6UXB0 335 aa7.29□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms