RNA–Protein interactions for RNA: ENST00000564703.1

RAB40C-208, Transcript of RAB40C, member RAS oncogene family, human

TSL 3

Gene RAB40C, Length 921 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RAB40C-208	ENST00000564703	ZNF137P	P52743	207 aa		12.84	□□□□□ -0.35
RAB40C-208	ENST00000564703	RAG2	P55895	527 aa		12.84	□□□□□ -0.35
RAB40C-208	ENST00000564703	HOGA1	Q86XE5	327 aa		12.84	□□□□□ -0.35
RAB40C-208	ENST00000564703	TMEM219	Q86XT9	240 aa		12.84	□□□□□ -0.35
RAB40C-208	ENST00000564703	CABLES2	Q9BTV7	478 aa		12.84	□□□□□ -0.35
RAB40C-208	ENST00000564703	RNF150	Q9ULK6	438 aa		12.84	□□□□□ -0.35
RAB40C-208	ENST00000564703		A0A1W2PPI3	338 aa		12.83	□□□□□ -0.36
RAB40C-208	ENST00000564703	ZNF701	M0R085	212 aa	Predicted RBP	12.83	□□□□□ -0.36
RAB40C-208	ENST00000564703	NDUFA7	O95182	113 aa		12.83	□□□□□ -0.36
RAB40C-208	ENST00000564703	SNRNP70	P08621	437 aa	Known RBP	12.83	□□□□□ -0.36
RAB40C-208	ENST00000564703	PTHLH	P12272	177 aa		12.83	□□□□□ -0.36
RAB40C-208	ENST00000564703	CD1B	P29016	333 aa		12.83	□□□□□ -0.36
RAB40C-208	ENST00000564703	GPR12	P47775	334 aa		12.83	□□□□□ -0.36
RAB40C-208	ENST00000564703	HNF4G	Q14541	408 aa		12.83	□□□□□ -0.36
RAB40C-208	ENST00000564703	HERPUD1	Q15011	391 aa		12.83	□□□□□ -0.36
RAB40C-208	ENST00000564703	CCBE1	Q6UXH8	406 aa	Predicted RBP	12.83	□□□□□ -0.36
RAB40C-208	ENST00000564703	C16orf82	Q7Z2V1	217 aa		12.83	□□□□□ -0.36
RAB40C-208	ENST00000564703	SNX29P2	Q8IUI4	249 aa		12.83	□□□□□ -0.36
RAB40C-208	ENST00000564703	OR4C13	Q8NGP0	309 aa		12.83	□□□□□ -0.36
RAB40C-208	ENST00000564703	SPATA3	Q8NHX4	192 aa		12.83	□□□□□ -0.36
RAB40C-208	ENST00000564703	C6orf62	Q9GZU0	229 aa	Predicted RBP	12.83	□□□□□ -0.36
RAB40C-208	ENST00000564703	TOLLIP	Q9H0E2	274 aa		12.83	□□□□□ -0.36
RAB40C-208	ENST00000564703	EXTL2	Q9UBQ6	330 aa		12.83	□□□□□ -0.36
RAB40C-208	ENST00000564703	COL6A5	A8TX70	2615 aa		12.83	□□□□□ -0.36
RAB40C-208	ENST00000564703	IGKV1D-8	A0A087WSZ0	117 aa		12.82	□□□□□ -0.36
RAB40C-208	ENST00000564703	IGHV3-72	A0A0B4J1Y9	119 aa		12.82	□□□□□ -0.36
RAB40C-208	ENST00000564703	FAM90A9P	A6NNJ1	464 aa		12.82	□□□□□ -0.36
RAB40C-208	ENST00000564703	CTDSP2	O14595	271 aa		12.82	□□□□□ -0.36
RAB40C-208	ENST00000564703	TPPP	O94811	219 aa		12.82	□□□□□ -0.36
RAB40C-208	ENST00000564703	HLA-DQB1	P01920	261 aa		12.82	□□□□□ -0.36
RAB40C-208	ENST00000564703	OR8U9	P0C7N5	309 aa		12.82	□□□□□ -0.36
RAB40C-208	ENST00000564703	TMEM11	P17152	192 aa		12.82	□□□□□ -0.36
RAB40C-208	ENST00000564703	OR3A3	P47888	321 aa		12.82	□□□□□ -0.36
RAB40C-208	ENST00000564703	ARSJ	Q5FYB0	599 aa	Predicted RBP	12.82	□□□□□ -0.36
RAB40C-208	ENST00000564703	GVQW1	Q8N7I0	195 aa		12.82	□□□□□ -0.36
RAB40C-208	ENST00000564703	C3orf56	Q8N813	242 aa		12.82	□□□□□ -0.36
RAB40C-208	ENST00000564703	OR2T10	Q8NGZ9	312 aa		12.82	□□□□□ -0.36
RAB40C-208	ENST00000564703	OR8U1	Q8NH10	309 aa		12.82	□□□□□ -0.36
RAB40C-208	ENST00000564703	MCFD2	Q8NI22	146 aa		12.82	□□□□□ -0.36
RAB40C-208	ENST00000564703	DGCR14	Q96DF8	476 aa	Known RBP	12.82	□□□□□ -0.36
RAB40C-208	ENST00000564703	ABHD14B	Q96IU4	210 aa		12.82	□□□□□ -0.36
RAB40C-208	ENST00000564703	AGMAT	Q9BSE5	352 aa		12.82	□□□□□ -0.36
RAB40C-208	ENST00000564703	SLC25A33	Q9BSK2	321 aa		12.82	□□□□□ -0.36
RAB40C-208	ENST00000564703	PRSS22	Q9GZN4	317 aa		12.82	□□□□□ -0.36
RAB40C-208	ENST00000564703	SCPEP1	Q9HB40	452 aa		12.82	□□□□□ -0.36
RAB40C-208	ENST00000564703	NECAP2	Q9NVZ3	263 aa		12.82	□□□□□ -0.36
RAB40C-208	ENST00000564703	SAA2-SAA4	A0A096LPE2	208 aa		12.81	□□□□□ -0.36
RAB40C-208	ENST00000564703	MEIS3P1	A6NDR6	274 aa		12.81	□□□□□ -0.36
RAB40C-208	ENST00000564703		M0QZK8	103 aa		12.81	□□□□□ -0.36
RAB40C-208	ENST00000564703	IGKV1D-33	P01593	117 aa		12.81	□□□□□ -0.36
RAB40C-208	ENST00000564703	IGKV1-33	P01594	117 aa		12.81	□□□□□ -0.36
RAB40C-208	ENST00000564703	FCER2	P06734	321 aa		12.81	□□□□□ -0.36
RAB40C-208	ENST00000564703	SAA2	P0DJI9	122 aa	Predicted RBP	12.81	□□□□□ -0.36
RAB40C-208	ENST00000564703	FAM71F2	Q6NXP2	309 aa		12.81	□□□□□ -0.36
RAB40C-208	ENST00000564703	ZNF833P	Q6ZTB9	187 aa		12.81	□□□□□ -0.36
RAB40C-208	ENST00000564703	ODF3L1	Q8IXM7	274 aa		12.81	□□□□□ -0.36
RAB40C-208	ENST00000564703	H1FOO	Q8IZA3	346 aa	Predicted RBP	12.81	□□□□□ -0.36
RAB40C-208	ENST00000564703	CFHR4	Q92496	578 aa		12.81	□□□□□ -0.36
RAB40C-208	ENST00000564703	TAF15	Q92804	592 aa	Known RBP eCLIP	12.81	□□□□□ -0.36
RAB40C-208	ENST00000564703	DIRAS2	Q96HU8	199 aa		12.81	□□□□□ -0.36
RAB40C-208	ENST00000564703	RBM14	Q96PK6	669 aa	Known RBP	12.81	□□□□□ -0.36
RAB40C-208	ENST00000564703	PARP12	Q9H0J9	701 aa	Known RBP	12.81	□□□□□ -0.36
RAB40C-208	ENST00000564703	IFI27L2	Q9H2X8	130 aa		12.81	□□□□□ -0.36
RAB40C-208	ENST00000564703	FBN1	P35555	2871 aa	Known RBP	12.8	□□□□□ -0.36
RAB40C-208	ENST00000564703	CLPSL1	A2RUU4	121 aa		12.8	□□□□□ -0.36
RAB40C-208	ENST00000564703	SULT1C2	O00338	296 aa		12.8	□□□□□ -0.36
RAB40C-208	ENST00000564703	TSPAN9	O75954	239 aa		12.8	□□□□□ -0.36
RAB40C-208	ENST00000564703	OR2F2	O95006	317 aa		12.8	□□□□□ -0.36
RAB40C-208	ENST00000564703	MOS	P00540	346 aa		12.8	□□□□□ -0.36
RAB40C-208	ENST00000564703	MC5R	P33032	325 aa		12.8	□□□□□ -0.36
RAB40C-208	ENST00000564703	COMP	P49747	757 aa	Predicted RBP	12.8	□□□□□ -0.36
RAB40C-208	ENST00000564703	LUM	P51884	338 aa	Predicted RBP	12.8	□□□□□ -0.36
RAB40C-208	ENST00000564703	HABP2	Q14520	560 aa	Predicted RBP	12.8	□□□□□ -0.36
RAB40C-208	ENST00000564703	AWAT1	Q58HT5	328 aa		12.8	□□□□□ -0.36
RAB40C-208	ENST00000564703		Q6ZSV7	163 aa		12.8	□□□□□ -0.36
RAB40C-208	ENST00000564703	ZNF436-AS1	Q8NC38	126 aa	Predicted RBP	12.8	□□□□□ -0.36
RAB40C-208	ENST00000564703	OR5AP2	Q8NGF4	316 aa		12.8	□□□□□ -0.36
RAB40C-208	ENST00000564703	OR2T6	Q8NHC8	308 aa		12.8	□□□□□ -0.36
RAB40C-208	ENST00000564703	DCUN1D5	Q9BTE7	237 aa		12.8	□□□□□ -0.36
RAB40C-208	ENST00000564703	RANBP3	Q9H6Z4	567 aa	Predicted RBP	12.8	□□□□□ -0.36
RAB40C-208	ENST00000564703	RABL2A	Q9UBK7	228 aa	Predicted RBP	12.8	□□□□□ -0.36
RAB40C-208	ENST00000564703	RABL2B	Q9UNT1	228 aa		12.8	□□□□□ -0.36
RAB40C-208	ENST00000564703	GAB2	Q9UQC2	676 aa		12.8	□□□□□ -0.36
RAB40C-208	ENST00000564703	OR2W1	Q9Y3N9	320 aa		12.8	□□□□□ -0.36
RAB40C-208	ENST00000564703	NCBP2L	A6PVI3	153 aa	Known RBP	12.79	□□□□□ -0.36
RAB40C-208	ENST00000564703		J3QRK9	145 aa		12.79	□□□□□ -0.36
RAB40C-208	ENST00000564703	CHST1	O43916	411 aa		12.79	□□□□□ -0.36
RAB40C-208	ENST00000564703	SLC22A5	O76082	557 aa		12.79	□□□□□ -0.36
RAB40C-208	ENST00000564703	OR5H8	P0DN80	308 aa		12.79	□□□□□ -0.36
RAB40C-208	ENST00000564703	MDK	P21741	143 aa	Predicted RBP	12.79	□□□□□ -0.36
RAB40C-208	ENST00000564703	NFYA	P23511	347 aa	Predicted RBP	12.79	□□□□□ -0.36
RAB40C-208	ENST00000564703	TAS2R46	P59540	309 aa		12.79	□□□□□ -0.36
RAB40C-208	ENST00000564703	RELB	Q01201	579 aa		12.79	□□□□□ -0.36
RAB40C-208	ENST00000564703	CDK10	Q15131	360 aa		12.79	□□□□□ -0.36
RAB40C-208	ENST00000564703	RPL39P5	Q59GN2	51 aa		12.79	□□□□□ -0.36
RAB40C-208	ENST00000564703	FCAMR	Q8WWV6	532 aa		12.79	□□□□□ -0.36
RAB40C-208	ENST00000564703	EAF1	Q96JC9	268 aa	Predicted RBP	12.79	□□□□□ -0.36
RAB40C-208	ENST00000564703	NABP2	Q9BQ15	211 aa		12.79	□□□□□ -0.36
RAB40C-208	ENST00000564703	MRPL20	Q9BYC9	149 aa	Known RBP	12.79	□□□□□ -0.36
RAB40C-208	ENST00000564703	SLIRP	Q9GZT3	109 aa	Known RBP	12.79	□□□□□ -0.36

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