RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 KLHDC1Q8N7A1 406 aa4.2□□□□□ -1.74
VPS35-205ENST00000563984 TMEM229BQ8NBD8 167 aa4.2□□□□□ -1.74
VPS35-205ENST00000563984 NEXN-AS1Q8NBZ9 246 aa4.2□□□□□ -1.74
VPS35-205ENST00000563984 OR4K17Q8NGC6 315 aa4.2□□□□□ -1.74
VPS35-205ENST00000563984 OR5AP2Q8NGF4 316 aa4.2□□□□□ -1.74
VPS35-205ENST00000563984 OR51A4Q8NGJ6 313 aa4.2□□□□□ -1.74
VPS35-205ENST00000563984 MFSD8Q8NHS3 518 aa4.2□□□□□ -1.74
VPS35-205ENST00000563984 PPTC7Q8NI37 304 aa4.2□□□□□ -1.74
VPS35-205ENST00000563984 SLC37A2Q8TED4 501 aa4.2□□□□□ -1.74
VPS35-205ENST00000563984 TMEM170AQ8WVE7 144 aa4.2□□□□□ -1.74
VPS35-205ENST00000563984 PPCDCQ96CD2 204 aa4.2□□□□□ -1.74
VPS35-205ENST00000563984 ZMYND19Q96E35 227 aaPredicted RBP4.2□□□□□ -1.74
VPS35-205ENST00000563984 PEBP4Q96S96 227 aa4.2□□□□□ -1.74
VPS35-205ENST00000563984 PDCD1LG2Q9BQ51 273 aa4.2□□□□□ -1.74
VPS35-205ENST00000563984 PRADC1Q9BSG0 188 aa4.2□□□□□ -1.74
VPS35-205ENST00000563984 LRRC61Q9BV99 259 aa4.2□□□□□ -1.74
VPS35-205ENST00000563984 DPY30Q9C005 99 aa4.2□□□□□ -1.74
VPS35-205ENST00000563984 FBXL15Q9H469 300 aa4.2□□□□□ -1.74
VPS35-205ENST00000563984 MAGIXQ9H6Y5 334 aa4.2□□□□□ -1.74
VPS35-205ENST00000563984 HEBP1Q9NRV9 189 aa4.2□□□□□ -1.74
VPS35-205ENST00000563984 FKBP11Q9NYL4 201 aa4.2□□□□□ -1.74
VPS35-205ENST00000563984 SHPKQ9UHJ6 478 aa4.2□□□□□ -1.74
VPS35-205ENST00000563984 PIK3C2BO00750 1634 aa4.2□□□□□ -1.74
VPS35-205ENST00000563984 VWDEQ8N2E2 1590 aa4.19□□□□□ -1.74
VPS35-205ENST00000563984 CHD2O14647 1828 aaKnown RBP4.19□□□□□ -1.74
VPS35-205ENST00000563984 XIRP1Q702N8 1843 aaKnown RBP4.19□□□□□ -1.74
VPS35-205ENST00000563984 IFT172Q9UG01 1749 aa4.19□□□□□ -1.74
VPS35-205ENST00000563984 MSGN1A6NI15 193 aa4.19□□□□□ -1.74
VPS35-205ENST00000563984 FAM183AA6NL82 134 aa4.19□□□□□ -1.74
VPS35-205ENST00000563984 ZNF850A8MQ14 1090 aa4.19□□□□□ -1.74
VPS35-205ENST00000563984 B4DEV8 164 aa4.19□□□□□ -1.74
VPS35-205ENST00000563984 H3BQ15 152 aa4.19□□□□□ -1.74
VPS35-205ENST00000563984 SULT2B1O00204 365 aa4.19□□□□□ -1.74
VPS35-205ENST00000563984 ZNF593O00488 134 aaPredicted RBP4.19□□□□□ -1.74
VPS35-205ENST00000563984 GABRPO00591 440 aa4.19□□□□□ -1.74
VPS35-205ENST00000563984 NME4O00746 187 aa4.19□□□□□ -1.74
VPS35-205ENST00000563984 SLC37A4O43826 429 aa4.19□□□□□ -1.74
VPS35-205ENST00000563984 NDUFC2O95298 119 aa4.19□□□□□ -1.74
VPS35-205ENST00000563984 CD8AP01732 235 aa4.19□□□□□ -1.74
VPS35-205ENST00000563984 IL3P08700 152 aa4.19□□□□□ -1.74
VPS35-205ENST00000563984 OR4A8P0C604 315 aa4.19□□□□□ -1.74
VPS35-205ENST00000563984 SLC35G6P0C7Q6 338 aa4.19□□□□□ -1.74
VPS35-205ENST00000563984 LAMP1P11279 417 aa4.19□□□□□ -1.74
VPS35-205ENST00000563984 ADCYAP1P18509 176 aa4.19□□□□□ -1.74
VPS35-205ENST00000563984 NFYBP25208 207 aa4.19□□□□□ -1.74
VPS35-205ENST00000563984 RPS10P46783 165 aaKnown RBP4.19□□□□□ -1.74
VPS35-205ENST00000563984 NUDT2P50583 147 aa4.19□□□□□ -1.74
VPS35-205ENST00000563984 HNRNPA3P51991 378 aaKnown RBP4.19□□□□□ -1.74
VPS35-205ENST00000563984 CLDN15P56746 228 aa4.19□□□□□ -1.74
VPS35-205ENST00000563984 UBE2NP61088 152 aaKnown RBP4.19□□□□□ -1.74
VPS35-205ENST00000563984 POU3F1Q03052 451 aaPredicted RBP4.19□□□□□ -1.74
VPS35-205ENST00000563984 PRDX4Q13162 271 aa4.19□□□□□ -1.74
VPS35-205ENST00000563984 UNC119Q13432 240 aa4.19□□□□□ -1.74
VPS35-205ENST00000563984 TIGITQ495A1 244 aa4.19□□□□□ -1.74
VPS35-205ENST00000563984 PRR30Q53SZ7 412 aaPredicted RBP4.19□□□□□ -1.74
VPS35-205ENST00000563984 CNIH2Q6PI25 160 aa4.19□□□□□ -1.74
VPS35-205ENST00000563984 Q6ZTC4 211 aa4.19□□□□□ -1.74
VPS35-205ENST00000563984 SLC25A26Q70HW3 274 aa4.19□□□□□ -1.74
VPS35-205ENST00000563984 LRP11Q86VZ4 500 aa4.19□□□□□ -1.74
VPS35-205ENST00000563984 TMEM86AQ8N2M4 240 aa4.19□□□□□ -1.74
VPS35-205ENST00000563984 TPRX1Q8N7U7 411 aa4.19□□□□□ -1.74
VPS35-205ENST00000563984 SCCPDHQ8NBX0 429 aa4.19□□□□□ -1.74
VPS35-205ENST00000563984 OR2T12Q8NG77 320 aa4.19□□□□□ -1.74
VPS35-205ENST00000563984 OR11H6Q8NGC7 330 aa4.19□□□□□ -1.74
VPS35-205ENST00000563984 OR4B1Q8NGF8 309 aa4.19□□□□□ -1.74
VPS35-205ENST00000563984 OR1J1Q8NGS3 322 aa4.19□□□□□ -1.74
VPS35-205ENST00000563984 OR1L1Q8NH94 360 aa4.19□□□□□ -1.74
VPS35-205ENST00000563984 RDH11Q8TC12 318 aa4.19□□□□□ -1.74
VPS35-205ENST00000563984 ZDHHC19Q8WVZ1 309 aaPredicted RBP4.19□□□□□ -1.74
VPS35-205ENST00000563984 SSMEM1Q8WWF3 244 aa4.19□□□□□ -1.74
VPS35-205ENST00000563984 RND1Q92730 232 aa4.19□□□□□ -1.74
VPS35-205ENST00000563984 TSLPQ969D9 159 aa4.19□□□□□ -1.74
VPS35-205ENST00000563984 IP6K3Q96PC2 410 aa4.19□□□□□ -1.74
VPS35-205ENST00000563984 IKZF5Q9H5V7 419 aa4.19□□□□□ -1.74
VPS35-205ENST00000563984 VSIRQ9H7M9 311 aa4.19□□□□□ -1.74
VPS35-205ENST00000563984 PELI2Q9HAT8 420 aa4.19□□□□□ -1.74
VPS35-205ENST00000563984 ELL3Q9HB65 397 aaPredicted RBP4.19□□□□□ -1.74
VPS35-205ENST00000563984 RPS10P5Q9NQ39 176 aa4.19□□□□□ -1.74
VPS35-205ENST00000563984 KLHDC2Q9Y2U9 406 aa4.19□□□□□ -1.74
VPS35-205ENST00000563984 ABCC6O95255 1503 aa4.19□□□□□ -1.74
VPS35-205ENST00000563984 DNMT1P26358 1616 aaKnown RBP4.18□□□□□ -1.74
VPS35-205ENST00000563984 CROCCQ5TZA2 2017 aa4.18□□□□□ -1.74
VPS35-205ENST00000563984 LINC01553A4QN01 128 aa4.18□□□□□ -1.74
VPS35-205ENST00000563984 A6NDN8 102 aa4.18□□□□□ -1.74
VPS35-205ENST00000563984 TMEM212A6NML5 194 aa4.18□□□□□ -1.74
VPS35-205ENST00000563984 C15orf61A6NNL5 157 aa4.18□□□□□ -1.74
VPS35-205ENST00000563984 BBIP1A8MTZ0 92 aa4.18□□□□□ -1.74
VPS35-205ENST00000563984 KRTAP9-6A8MVA2 160 aa4.18□□□□□ -1.74
VPS35-205ENST00000563984 MCRIP1C9JLW8 97 aa4.18□□□□□ -1.74
VPS35-205ENST00000563984 HIST1H2BKO60814 126 aa4.18□□□□□ -1.74
VPS35-205ENST00000563984 CLDN11O75508 207 aa4.18□□□□□ -1.74
VPS35-205ENST00000563984 HIST1H2BJP06899 126 aa4.18□□□□□ -1.74
VPS35-205ENST00000563984 GPX1P07203 203 aa4.18□□□□□ -1.74
VPS35-205ENST00000563984 SPINK8P0C7L1 97 aa4.18□□□□□ -1.74
VPS35-205ENST00000563984 BCL3P20749 454 aa4.18□□□□□ -1.74
VPS35-205ENST00000563984 HIST1H2BOP23527 126 aa4.18□□□□□ -1.74
VPS35-205ENST00000563984 HIST1H2BBP33778 126 aa4.18□□□□□ -1.74
VPS35-205ENST00000563984 RPL3P39023 403 aaKnown RBP4.18□□□□□ -1.74
VPS35-205ENST00000563984 GLIPR1P48060 266 aa4.18□□□□□ -1.74
VPS35-205ENST00000563984 FOXA1P55317 472 aa4.18□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms