RNA–Protein interactions for RNA: ENST00000561817.5

CAPN3-210, Transcript of calpain 3, humanhuman

TSL 1 (best) BASIC

Gene CAPN3, Length 915 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-210ENST00000561817 DUX4L3P0CJ86 424 aa5.42□□□□□ -1.54
CAPN3-210ENST00000561817 DUX4L4P0CJ87 422 aa5.42□□□□□ -1.54
CAPN3-210ENST00000561817 DUX4L5P0CJ88 424 aa5.42□□□□□ -1.54
CAPN3-210ENST00000561817 DUX4L6P0CJ89 424 aa5.42□□□□□ -1.54
CAPN3-210ENST00000561817 DUX4L7P0CJ90 424 aa5.42□□□□□ -1.54
CAPN3-210ENST00000561817 LYL1P12980 280 aa5.42□□□□□ -1.54
CAPN3-210ENST00000561817 AGAP20933 346 aa5.42□□□□□ -1.54
CAPN3-210ENST00000561817 HERV-K104P61576 105 aa5.42□□□□□ -1.54
CAPN3-210ENST00000561817 ZNF672Q499Z4 452 aaPredicted RBP5.42□□□□□ -1.54
CAPN3-210ENST00000561817 PHLDA2Q53GA4 152 aa5.42□□□□□ -1.54
CAPN3-210ENST00000561817 DUX4L9Q6RFH8 374 aaPredicted RBP5.42□□□□□ -1.54
CAPN3-210ENST00000561817 ZNF788Q6ZQV5 615 aa5.42□□□□□ -1.54
CAPN3-210ENST00000561817 KCTD9Q7L273 389 aa5.42□□□□□ -1.54
CAPN3-210ENST00000561817 TCF23Q7RTU1 214 aa5.42□□□□□ -1.54
CAPN3-210ENST00000561817 SGPP2Q8IWX5 399 aa5.42□□□□□ -1.54
CAPN3-210ENST00000561817 FAM185AQ8N0U4 392 aa5.42□□□□□ -1.54
CAPN3-210ENST00000561817 ZNF808Q8N4W9 903 aaPredicted RBP5.42□□□□□ -1.54
CAPN3-210ENST00000561817 COQ8AQ8NI60 647 aa5.42□□□□□ -1.54
CAPN3-210ENST00000561817 UBALD1Q8TB05 177 aa5.42□□□□□ -1.54
CAPN3-210ENST00000561817 C5orf30Q96GV9 206 aa5.42□□□□□ -1.54
CAPN3-210ENST00000561817 SEC22AQ96IW7 307 aa5.42□□□□□ -1.54
CAPN3-210ENST00000561817 TMEM56Q96MV1 263 aa5.42□□□□□ -1.54
CAPN3-210ENST00000561817 TP53RKQ96S44 253 aa5.42□□□□□ -1.54
CAPN3-210ENST00000561817 DCTN5Q9BTE1 182 aa5.42□□□□□ -1.54
CAPN3-210ENST00000561817 RNF126Q9BV68 326 aa5.42□□□□□ -1.54
CAPN3-210ENST00000561817 SUCNR1Q9BXA5 334 aa5.42□□□□□ -1.54
CAPN3-210ENST00000561817 NMES1Q9C002 83 aa5.42□□□□□ -1.54
CAPN3-210ENST00000561817 SLA2Q9H6Q3 261 aa5.42□□□□□ -1.54
CAPN3-210ENST00000561817 LINC00574Q9H8X3 128 aa5.42□□□□□ -1.54
CAPN3-210ENST00000561817 CCL28Q9NRJ3 127 aa5.42□□□□□ -1.54
CAPN3-210ENST00000561817 DUX4Q9UBX2 424 aa5.42□□□□□ -1.54
CAPN3-210ENST00000561817 NDRG3Q9UGV2 375 aa5.42□□□□□ -1.54
CAPN3-210ENST00000561817 TRAPPC2LQ9UL33 140 aa5.42□□□□□ -1.54
CAPN3-210ENST00000561817 RNF115Q9Y4L5 304 aa5.42□□□□□ -1.54
CAPN3-210ENST00000561817 TMEM56-RWDD3S4R434 201 aa5.42□□□□□ -1.54
CAPN3-210ENST00000561817 ABCA4P78363 2273 aa5.42□□□□□ -1.54
CAPN3-210ENST00000561817 RAI1Q7Z5J4 1906 aaPredicted RBP5.42□□□□□ -1.54
CAPN3-210ENST00000561817 MYO18BQ8IUG5 2567 aa5.42□□□□□ -1.54
CAPN3-210ENST00000561817 UBR5O95071 2799 aaPredicted RBP5.41□□□□□ -1.54
CAPN3-210ENST00000561817 SPTBN1Q01082 2364 aaKnown RBP5.41□□□□□ -1.54
CAPN3-210ENST00000561817 TEX13DA0A0J9YY54 714 aaPredicted RBP5.41□□□□□ -1.54
CAPN3-210ENST00000561817 ODAMA1E959 279 aa5.41□□□□□ -1.54
CAPN3-210ENST00000561817 TMEM178BH3BS89 294 aa5.41□□□□□ -1.54
CAPN3-210ENST00000561817 LGALS8O00214 317 aa5.41□□□□□ -1.54
CAPN3-210ENST00000561817 NDUFS8O00217 210 aa5.41□□□□□ -1.54
CAPN3-210ENST00000561817 F2RL2O00254 374 aa5.41□□□□□ -1.54
CAPN3-210ENST00000561817 SIGLEC5O15389 551 aa5.41□□□□□ -1.54
CAPN3-210ENST00000561817 PGLYRP1O75594 196 aaPredicted RBP5.41□□□□□ -1.54
CAPN3-210ENST00000561817 OR2C1O95371 312 aa5.41□□□□□ -1.54
CAPN3-210ENST00000561817 CLDN14O95500 239 aa5.41□□□□□ -1.54
CAPN3-210ENST00000561817 RPA2P15927 270 aa5.41□□□□□ -1.54
CAPN3-210ENST00000561817 MUC1P15941 1255 aaPredicted RBP5.41□□□□□ -1.54
CAPN3-210ENST00000561817 IGFBP2P18065 325 aa5.41□□□□□ -1.54
CAPN3-210ENST00000561817 UCP1P25874 307 aa5.41□□□□□ -1.54
CAPN3-210ENST00000561817 P2RX3P56373 397 aa5.41□□□□□ -1.54
CAPN3-210ENST00000561817 CCL8P80075 99 aa5.41□□□□□ -1.54
CAPN3-210ENST00000561817 ID3Q02535 119 aa5.41□□□□□ -1.54
CAPN3-210ENST00000561817 SRSF1Q07955 248 aaKnown RBP eCLIP5.41□□□□□ -1.54
CAPN3-210ENST00000561817 GNMTQ14749 295 aa5.41□□□□□ -1.54
CAPN3-210ENST00000561817 SP6Q3SY56 376 aa5.41□□□□□ -1.54
CAPN3-210ENST00000561817 GGNBP1Q5YKI7 109 aa5.41□□□□□ -1.54
CAPN3-210ENST00000561817 HIST2H2BCQ6DN03 193 aa5.41□□□□□ -1.54
CAPN3-210ENST00000561817 C11orf71Q6IPW1 123 aa5.41□□□□□ -1.54
CAPN3-210ENST00000561817 TBC1D26Q86UD7 250 aa5.41□□□□□ -1.54
CAPN3-210ENST00000561817 ZNF561Q8N587 486 aa5.41□□□□□ -1.54
CAPN3-210ENST00000561817 TPRX1Q8N7U7 411 aa5.41□□□□□ -1.54
CAPN3-210ENST00000561817 ASCC1Q8N9N2 400 aaKnown RBP5.41□□□□□ -1.54
CAPN3-210ENST00000561817 BOLLQ8N9W6 283 aaKnown RBP5.41□□□□□ -1.54
CAPN3-210ENST00000561817 CCDC71LQ8N9Z2 235 aa5.41□□□□□ -1.54
CAPN3-210ENST00000561817 ZNRF1Q8ND25 227 aa5.41□□□□□ -1.54
CAPN3-210ENST00000561817 OR52L2PQ8NGH6 319 aa5.41□□□□□ -1.54
CAPN3-210ENST00000561817 OR10V1Q8NGI7 309 aa5.41□□□□□ -1.54
CAPN3-210ENST00000561817 OR10J5Q8NHC4 309 aa5.41□□□□□ -1.54
CAPN3-210ENST00000561817 MRGPRDQ8TDS7 321 aa5.41□□□□□ -1.54
CAPN3-210ENST00000561817 PPP1R1CQ8WVI7 109 aa5.41□□□□□ -1.54
CAPN3-210ENST00000561817 SECTM1Q8WVN6 248 aa5.41□□□□□ -1.54
CAPN3-210ENST00000561817 C2orf50Q96LR7 162 aa5.41□□□□□ -1.54
CAPN3-210ENST00000561817 GPHA2Q96T91 129 aa5.41□□□□□ -1.54
CAPN3-210ENST00000561817 C1orf43Q9BWL3 253 aa5.41□□□□□ -1.54
CAPN3-210ENST00000561817 TMEM222Q9H0R3 208 aa5.41□□□□□ -1.54
CAPN3-210ENST00000561817 FAM234AQ9H0X4 552 aa5.41□□□□□ -1.54
CAPN3-210ENST00000561817 GFOD1Q9NXC2 390 aa5.41□□□□□ -1.54
CAPN3-210ENST00000561817 RDH8Q9NYR8 311 aa5.41□□□□□ -1.54
CAPN3-210ENST00000561817 CISD1Q9NZ45 108 aaKnown RBP5.41□□□□□ -1.54
CAPN3-210ENST00000561817 DNAJB11Q9UBS4 358 aa5.41□□□□□ -1.54
CAPN3-210ENST00000561817 SLC25A10Q9UBX3 287 aaPredicted RBP5.41□□□□□ -1.54
CAPN3-210ENST00000561817 TNFSF18Q9UNG2 199 aa5.41□□□□□ -1.54
CAPN3-210ENST00000561817 PPP1R3CQ9UQK1 317 aa5.41□□□□□ -1.54
CAPN3-210ENST00000561817 C3orf85A0A1B0GTC6 90 aa5.4□□□□□ -1.54
CAPN3-210ENST00000561817 A0A1W2PPR1 153 aa5.4□□□□□ -1.54
CAPN3-210ENST00000561817 RNF222A6NCQ9 220 aa5.4□□□□□ -1.54
CAPN3-210ENST00000561817 TUBAL3A6NHL2 446 aa5.4□□□□□ -1.54
CAPN3-210ENST00000561817 H0Y980 276 aa5.4□□□□□ -1.54
CAPN3-210ENST00000561817 HSD17B6O14756 317 aa5.4□□□□□ -1.54
CAPN3-210ENST00000561817 SNAPC5O75971 98 aa5.4□□□□□ -1.54
CAPN3-210ENST00000561817 CDS2O95674 445 aa5.4□□□□□ -1.54
CAPN3-210ENST00000561817 HOXB5P09067 269 aa5.4□□□□□ -1.54
CAPN3-210ENST00000561817 TNFRSF1AP19438 455 aa5.4□□□□□ -1.54
CAPN3-210ENST00000561817 PSMB6P28072 239 aa5.4□□□□□ -1.54
CAPN3-210ENST00000561817 SSTR2P30874 369 aa5.4□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms