RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 EFNA4P52798 201 aa17.53■□□□□ 0.4
CLN3-209ENST00000561689 BTNL3Q6UXE8 466 aa17.53■□□□□ 0.4
CLN3-209ENST00000561689 PPP1R1CQ8WVI7 109 aa17.53■□□□□ 0.4
CLN3-209ENST00000561689 ZNF714Q96N38 554 aa17.53■□□□□ 0.4
CLN3-209ENST00000561689 GAL3ST2Q9H3Q3 398 aa17.53■□□□□ 0.4
CLN3-209ENST00000561689 NARFLQ9H6Q4 476 aa17.53■□□□□ 0.4
CLN3-209ENST00000561689 A0A1W2PPE3 182 aa17.52■□□□□ 0.4
CLN3-209ENST00000561689 OVOL3O00110 214 aa17.52■□□□□ 0.4
CLN3-209ENST00000561689 SLC31A2O15432 143 aa17.52■□□□□ 0.4
CLN3-209ENST00000561689 TMEM33P57088 247 aa17.52■□□□□ 0.4
CLN3-209ENST00000561689 FAM219AQ8IW50 185 aa17.52■□□□□ 0.4
CLN3-209ENST00000561689 SLC35G3Q8N808 338 aa17.52■□□□□ 0.4
CLN3-209ENST00000561689 GSKIPQ9P0R6 139 aa17.52■□□□□ 0.4
CLN3-209ENST00000561689 TRAV14DV4A0A0A6YYC5 116 aa17.51■□□□□ 0.39
CLN3-209ENST00000561689 IFNA21P01568 189 aa17.51■□□□□ 0.39
CLN3-209ENST00000561689 S100A1P23297 94 aa17.51■□□□□ 0.39
CLN3-209ENST00000561689 ZNF695Q8IW36 515 aa17.51■□□□□ 0.39
CLN3-209ENST00000561689 TMEM56Q96MV1 263 aa17.51■□□□□ 0.39
CLN3-209ENST00000561689 SDHAF2Q9NX18 166 aa17.51■□□□□ 0.39
CLN3-209ENST00000561689 TMEM56-RWDD3S4R434 201 aa17.51■□□□□ 0.39
CLN3-209ENST00000561689 TACC2O95359 2948 aa17.51■□□□□ 0.39
CLN3-209ENST00000561689 FXYD6-FXYD2A0A087WZ82 144 aa17.51■□□□□ 0.39
CLN3-209ENST00000561689 UCP1P25874 307 aa17.51■□□□□ 0.39
CLN3-209ENST00000561689 IAH1Q2TAA2 248 aaPredicted RBP17.51■□□□□ 0.39
CLN3-209ENST00000561689 SP5Q6BEB4 398 aaPredicted RBP17.51■□□□□ 0.39
CLN3-209ENST00000561689 OR8H1Q8NGG4 311 aa17.51■□□□□ 0.39
CLN3-209ENST00000561689 C2orf50Q96LR7 162 aa17.51■□□□□ 0.39
CLN3-209ENST00000561689 NMES1Q9C002 83 aa17.51■□□□□ 0.39
CLN3-209ENST00000561689 COMMD9Q9P000 198 aa17.51■□□□□ 0.39
CLN3-209ENST00000561689 LPAR3Q9UBY5 353 aa17.51■□□□□ 0.39
CLN3-209ENST00000561689 DSCAML1Q8TD84 2053 aa17.51■□□□□ 0.39
CLN3-209ENST00000561689 CDS2O95674 445 aa17.5■□□□□ 0.39
CLN3-209ENST00000561689 GPR12P47775 334 aa17.5■□□□□ 0.39
CLN3-209ENST00000561689 SRPXP78539 464 aa17.5■□□□□ 0.39
CLN3-209ENST00000561689 Q3ZCU0 254 aa17.5■□□□□ 0.39
CLN3-209ENST00000561689 TMEM155Q4W5P6 130 aa17.5■□□□□ 0.39
CLN3-209ENST00000561689 CT45A1Q5HYN5 189 aa17.5■□□□□ 0.39
CLN3-209ENST00000561689 SELENOHQ8IZQ5 122 aaKnown RBP17.5■□□□□ 0.39
CLN3-209ENST00000561689 ZBTB34Q8NCN2 500 aa17.5■□□□□ 0.39
CLN3-209ENST00000561689 OR8B3Q8NGG8 313 aa17.5■□□□□ 0.39
CLN3-209ENST00000561689 CT45A3Q8NHU0 189 aa17.5■□□□□ 0.39
CLN3-209ENST00000561689 OR8B2Q96RD0 313 aa17.5■□□□□ 0.39
CLN3-209ENST00000561689 MIOXQ9UGB7 285 aa17.5■□□□□ 0.39
CLN3-209ENST00000561689 RPUSD1Q9UJJ7 312 aaKnown RBP17.5■□□□□ 0.39
CLN3-209ENST00000561689 CRYBG3Q68DQ2 2970 aa17.5■□□□□ 0.39
CLN3-209ENST00000561689 SERPINE2P07093 398 aa17.49■□□□□ 0.39
CLN3-209ENST00000561689 WNT2P09544 360 aa17.49■□□□□ 0.39
CLN3-209ENST00000561689 COX6B1P14854 86 aa17.49■□□□□ 0.39
CLN3-209ENST00000561689 GNG10P50151 68 aa17.49■□□□□ 0.39
CLN3-209ENST00000561689 ZNF767PQ75MW2 155 aa17.49■□□□□ 0.39
CLN3-209ENST00000561689 ABHD14AQ9BUJ0 271 aa17.49■□□□□ 0.39
CLN3-209ENST00000561689 IFI27L2Q9H2X8 130 aa17.49■□□□□ 0.39
CLN3-209ENST00000561689 MPC2O95563 127 aa17.49■□□□□ 0.39
CLN3-209ENST00000561689 GPR6P46095 362 aaPredicted RBP17.49■□□□□ 0.39
CLN3-209ENST00000561689 LINC00205P59089 165 aa17.49■□□□□ 0.39
CLN3-209ENST00000561689 RPL30P62888 115 aaKnown RBP17.49■□□□□ 0.39
CLN3-209ENST00000561689 CYCSP99999 105 aaKnown RBP17.49■□□□□ 0.39
CLN3-209ENST00000561689 EIF4EBP1Q13541 118 aaPredicted RBP17.49■□□□□ 0.39
CLN3-209ENST00000561689 HEPN1Q6WQI6 88 aa17.49■□□□□ 0.39
CLN3-209ENST00000561689 NEIL1Q96FI4 390 aaPredicted RBP17.49■□□□□ 0.39
CLN3-209ENST00000561689 CCL19Q99731 98 aa17.49■□□□□ 0.39
CLN3-209ENST00000561689 FGL1Q08830 312 aa17.48■□□□□ 0.39
CLN3-209ENST00000561689 OR2B11Q5JQS5 317 aa17.48■□□□□ 0.39
CLN3-209ENST00000561689 OR52M1Q8NGK5 317 aa17.48■□□□□ 0.39
CLN3-209ENST00000561689 IGFBPL1Q8WX77 278 aa17.48■□□□□ 0.39
CLN3-209ENST00000561689 LIN7CQ9NUP9 197 aaKnown RBP17.48■□□□□ 0.39
CLN3-209ENST00000561689 TRBV23-1A0A0A0MS06 115 aa17.48■□□□□ 0.39
CLN3-209ENST00000561689 PROP1O75360 226 aa17.48■□□□□ 0.39
CLN3-209ENST00000561689 CXCL2P19875 107 aa17.48■□□□□ 0.39
CLN3-209ENST00000561689 PSMB6P28072 239 aa17.48■□□□□ 0.39
CLN3-209ENST00000561689 RPL39P5Q59GN2 51 aa17.48■□□□□ 0.39
CLN3-209ENST00000561689 WDR25Q64LD2 544 aaPredicted RBP17.48■□□□□ 0.39
CLN3-209ENST00000561689 TEX261Q6UWH6 196 aa17.48■□□□□ 0.39
CLN3-209ENST00000561689 ZNF525Q8N782 197 aa17.48■□□□□ 0.39
CLN3-209ENST00000561689 RBPMSQ93062 196 aaKnown RBP17.48■□□□□ 0.39
CLN3-209ENST00000561689 U3KQ87 197 aa17.48■□□□□ 0.39
CLN3-209ENST00000561689 RNF212BA8MTL3 300 aa17.47■□□□□ 0.39
CLN3-209ENST00000561689 ARPC5O15511 151 aa17.47■□□□□ 0.39
CLN3-209ENST00000561689 DLX6P56179 175 aa17.47■□□□□ 0.39
CLN3-209ENST00000561689 MSMO1Q15800 293 aa17.47■□□□□ 0.39
CLN3-209ENST00000561689 TMEM30BQ3MIR4 351 aa17.47■□□□□ 0.39
CLN3-209ENST00000561689 ZNF585BQ52M93 769 aa17.47■□□□□ 0.39
CLN3-209ENST00000561689 ZNF439Q8NDP4 499 aa17.47■□□□□ 0.39
CLN3-209ENST00000561689 ZNRD1Q9P1U0 126 aa17.47■□□□□ 0.39
CLN3-209ENST00000561689 TMED3Q9Y3Q3 217 aa17.47■□□□□ 0.39
CLN3-209ENST00000561689 ANKRD34BA5PLL1 514 aa17.46■□□□□ 0.39
CLN3-209ENST00000561689 B3GALNT1O75752 331 aa17.46■□□□□ 0.39
CLN3-209ENST00000561689 IGHV4-39P01824 125 aa17.46■□□□□ 0.39
CLN3-209ENST00000561689 RAB7AP51149 207 aa17.46■□□□□ 0.39
CLN3-209ENST00000561689 C11orf87Q6NUJ2 197 aa17.46■□□□□ 0.39
CLN3-209ENST00000561689 ZNF680Q8NEM1 530 aa17.46■□□□□ 0.39
CLN3-209ENST00000561689 OR10A7Q8NGE5 316 aa17.46■□□□□ 0.39
CLN3-209ENST00000561689 TCTEX1D2Q8WW35 142 aa17.46■□□□□ 0.39
CLN3-209ENST00000561689 MALRD1Q5VYJ5 2156 aa17.46■□□□□ 0.39
CLN3-209ENST00000561689 LINC00473A8K010 186 aa17.46■□□□□ 0.39
CLN3-209ENST00000561689 ITGB1BP1O14713 200 aa17.46■□□□□ 0.39
CLN3-209ENST00000561689 RAMP3O60896 148 aa17.46■□□□□ 0.39
CLN3-209ENST00000561689 IL15RAQ13261 267 aa17.46■□□□□ 0.39
CLN3-209ENST00000561689 C1orf229Q6ZS94 237 aaPredicted RBP17.46■□□□□ 0.39
CLN3-209ENST00000561689 PATZ1Q9HBE1 687 aaKnown RBP17.46■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms