RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 SRRM5B3KS81 715 aa4.54□□□□□ -1.68
VPS13C-209ENST00000560637 MFNGO00587 321 aa4.54□□□□□ -1.68
VPS13C-209ENST00000560637 EIF3GO75821 320 aaKnown RBP eCLIP4.54□□□□□ -1.68
VPS13C-209ENST00000560637 REG1AP05451 166 aa4.54□□□□□ -1.68
VPS13C-209ENST00000560637 ZNF250P15622 560 aa4.54□□□□□ -1.68
VPS13C-209ENST00000560637 KITLGP21583 273 aa4.54□□□□□ -1.68
VPS13C-209ENST00000560637 ELLP55199 621 aaPredicted RBP4.54□□□□□ -1.68
VPS13C-209ENST00000560637 POLR2GP62487 172 aaKnown RBP eCLIP4.54□□□□□ -1.68
VPS13C-209ENST00000560637 HIST1H3AP68431 136 aa4.54□□□□□ -1.68
VPS13C-209ENST00000560637 HIST2H3PS2Q5TEC6 136 aa4.54□□□□□ -1.68
VPS13C-209ENST00000560637 HCP5Q6MZN7 132 aa4.54□□□□□ -1.68
VPS13C-209ENST00000560637 FOXL2NBQ6ZUU3 175 aa4.54□□□□□ -1.68
VPS13C-209ENST00000560637 HIST2H3AQ71DI3 136 aa4.54□□□□□ -1.68
VPS13C-209ENST00000560637 MOB1BQ7L9L4 216 aa4.54□□□□□ -1.68
VPS13C-209ENST00000560637 TMEM219Q86XT9 240 aa4.54□□□□□ -1.68
VPS13C-209ENST00000560637 STX12Q86Y82 276 aa4.54□□□□□ -1.68
VPS13C-209ENST00000560637 LRRC20Q8TCA0 184 aa4.54□□□□□ -1.68
VPS13C-209ENST00000560637 ERGIC1Q969X5 290 aa4.54□□□□□ -1.68
VPS13C-209ENST00000560637 MISP3Q96FF7 219 aa4.54□□□□□ -1.68
VPS13C-209ENST00000560637 WDFY2Q96P53 400 aa4.54□□□□□ -1.68
VPS13C-209ENST00000560637 FAM103A1Q9BTL3 118 aaKnown RBP4.54□□□□□ -1.68
VPS13C-209ENST00000560637 LIN7CQ9NUP9 197 aaKnown RBP4.54□□□□□ -1.68
VPS13C-209ENST00000560637 TACC2O95359 2948 aa4.54□□□□□ -1.68
VPS13C-209ENST00000560637 IGKV1D-17A0A075B6S4 117 aa4.54□□□□□ -1.68
VPS13C-209ENST00000560637 J3QW42 95 aa4.54□□□□□ -1.68
VPS13C-209ENST00000560637 K7EPK0 472 aa4.54□□□□□ -1.68
VPS13C-209ENST00000560637 TPPPO94811 219 aa4.54□□□□□ -1.68
VPS13C-209ENST00000560637 RPL23AP62750 156 aaKnown RBP4.54□□□□□ -1.68
VPS13C-209ENST00000560637 OR2F1Q13607 317 aa4.54□□□□□ -1.68
VPS13C-209ENST00000560637 DYRK1AQ13627 763 aa4.54□□□□□ -1.68
VPS13C-209ENST00000560637 TMEM128Q5BJH2 165 aa4.54□□□□□ -1.68
VPS13C-209ENST00000560637 MBNL2Q5VZF2 373 aaKnown RBP4.54□□□□□ -1.68
VPS13C-209ENST00000560637 ELP2Q6IA86 826 aa4.54□□□□□ -1.68
VPS13C-209ENST00000560637 CFAP161Q6P656 301 aa4.54□□□□□ -1.68
VPS13C-209ENST00000560637 CLEC18BQ6UXF7 455 aa4.54□□□□□ -1.68
VPS13C-209ENST00000560637 HOGA1Q86XE5 327 aa4.54□□□□□ -1.68
VPS13C-209ENST00000560637 FAM71E2Q8N5Q1 922 aa4.54□□□□□ -1.68
VPS13C-209ENST00000560637 MINDY2Q8NBR6 621 aa4.54□□□□□ -1.68
VPS13C-209ENST00000560637 OR13D1Q8NGV5 346 aa4.54□□□□□ -1.68
VPS13C-209ENST00000560637 PPP1R1CQ8WVI7 109 aa4.54□□□□□ -1.68
VPS13C-209ENST00000560637 WDR89Q96FK6 387 aaPredicted RBP4.54□□□□□ -1.68
VPS13C-209ENST00000560637 MS4A10Q96PG2 267 aa4.54□□□□□ -1.68
VPS13C-209ENST00000560637 MBD2Q9UBB5 411 aa4.54□□□□□ -1.68
VPS13C-209ENST00000560637 VSIG4Q9Y279 399 aa4.54□□□□□ -1.68
VPS13C-209ENST00000560637 AUP1Q9Y679 476 aa4.54□□□□□ -1.68
VPS13C-209ENST00000560637 ATRQ13535 2644 aa4.54□□□□□ -1.68
VPS13C-209ENST00000560637 RELNP78509 3460 aa4.54□□□□□ -1.68
VPS13C-209ENST00000560637 IGHV3OR16-8A0A075B7F1 116 aa4.54□□□□□ -1.68
VPS13C-209ENST00000560637 NUDT19A8MXV4 375 aa4.54□□□□□ -1.68
VPS13C-209ENST00000560637 HMGB3O15347 200 aaKnown RBP4.54□□□□□ -1.68
VPS13C-209ENST00000560637 PRAF2O60831 178 aa4.54□□□□□ -1.68
VPS13C-209ENST00000560637 NDUFB6O95139 128 aa4.54□□□□□ -1.68
VPS13C-209ENST00000560637 IGLV1-44P01699 117 aa4.54□□□□□ -1.68
VPS13C-209ENST00000560637 PET100P0DJ07 73 aa4.54□□□□□ -1.68
VPS13C-209ENST00000560637 CCL1P22362 96 aa4.54□□□□□ -1.68
VPS13C-209ENST00000560637 HTR1DP28221 377 aa4.54□□□□□ -1.68
VPS13C-209ENST00000560637 BAXQ07812 192 aa4.54□□□□□ -1.68
VPS13C-209ENST00000560637 TMEM267Q0VDI3 215 aaPredicted RBP4.54□□□□□ -1.68
VPS13C-209ENST00000560637 OXA1LQ15070 435 aa4.54□□□□□ -1.68
VPS13C-209ENST00000560637 ZNF626Q68DY1 528 aa4.54□□□□□ -1.68
VPS13C-209ENST00000560637 ALKAL2Q6UX46 152 aa4.54□□□□□ -1.68
VPS13C-209ENST00000560637 C20orf204Q6ZNR8 217 aa4.54□□□□□ -1.68
VPS13C-209ENST00000560637 COLCA1Q6ZS62 124 aa4.54□□□□□ -1.68
VPS13C-209ENST00000560637 CDH26Q8IXH8 852 aa4.54□□□□□ -1.68
VPS13C-209ENST00000560637 RABL2AQ9UBK7 228 aaPredicted RBP4.54□□□□□ -1.68
VPS13C-209ENST00000560637 RABL2BQ9UNT1 228 aa4.54□□□□□ -1.68
VPS13C-209ENST00000560637 TRBV23-1A0A0A0MS06 115 aa4.53□□□□□ -1.68
VPS13C-209ENST00000560637 SSX5O60225 188 aa4.53□□□□□ -1.68
VPS13C-209ENST00000560637 SRSF10O75494 262 aaKnown RBP4.53□□□□□ -1.68
VPS13C-209ENST00000560637 FOXH1O75593 365 aa4.53□□□□□ -1.68
VPS13C-209ENST00000560637 CD1AP06126 327 aa4.53□□□□□ -1.68
VPS13C-209ENST00000560637 CXCL3P19876 107 aa4.53□□□□□ -1.68
VPS13C-209ENST00000560637 CEACAM3P40198 252 aa4.53□□□□□ -1.68
VPS13C-209ENST00000560637 ZP1P60852 638 aa4.53□□□□□ -1.68
VPS13C-209ENST00000560637 SSTP61278 116 aa4.53□□□□□ -1.68
VPS13C-209ENST00000560637 PDLIM3Q53GG5 364 aaPredicted RBP4.53□□□□□ -1.68
VPS13C-209ENST00000560637 CD276Q5ZPR3 534 aa4.53□□□□□ -1.68
VPS13C-209ENST00000560637 WDR25Q64LD2 544 aaPredicted RBP4.53□□□□□ -1.68
VPS13C-209ENST00000560637 SIGIRRQ6IA17 410 aa4.53□□□□□ -1.68
VPS13C-209ENST00000560637 LYG2Q86SG7 212 aa4.53□□□□□ -1.68
VPS13C-209ENST00000560637 SPSB4Q96A44 273 aa4.53□□□□□ -1.68
VPS13C-209ENST00000560637 R3HDM4Q96D70 268 aa4.53□□□□□ -1.68
VPS13C-209ENST00000560637 C14orf79Q96F83 325 aa4.53□□□□□ -1.68
VPS13C-209ENST00000560637 HIPK2Q9H2X6 1198 aa4.53□□□□□ -1.68
VPS13C-209ENST00000560637 Q9N2K0 584 aa4.53□□□□□ -1.68
VPS13C-209ENST00000560637 PARP11Q9NR21 331 aa4.53□□□□□ -1.68
VPS13C-209ENST00000560637 MMP26Q9NRE1 261 aa4.53□□□□□ -1.68
VPS13C-209ENST00000560637 C2CD3Q4AC94 2353 aa4.53□□□□□ -1.68
VPS13C-209ENST00000560637 IGKV1D-13A0A0B4J2D9 117 aa4.53□□□□□ -1.68
VPS13C-209ENST00000560637 ST8SIA3O43173 380 aa4.53□□□□□ -1.68
VPS13C-209ENST00000560637 MELTFP08582 738 aa4.53□□□□□ -1.68
VPS13C-209ENST00000560637 METTL15P1P0C7V9 234 aa4.53□□□□□ -1.68
VPS13C-209ENST00000560637 IGKV1-13P0DP09 117 aa4.53□□□□□ -1.68
VPS13C-209ENST00000560637 PF4V1P10720 104 aa4.53□□□□□ -1.68
VPS13C-209ENST00000560637 TUBG1P23258 451 aa4.53□□□□□ -1.68
VPS13C-209ENST00000560637 FPR2P25090 351 aa4.53□□□□□ -1.68
VPS13C-209ENST00000560637 KCNJ3P48549 501 aa4.53□□□□□ -1.68
VPS13C-209ENST00000560637 KLF9Q13886 244 aaPredicted RBP4.53□□□□□ -1.68
VPS13C-209ENST00000560637 GGNBP1Q5YKI7 109 aa4.53□□□□□ -1.68
VPS13C-209ENST00000560637 RUSC1-AS1Q66K80 236 aa4.53□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms