RNA–Protein interactions for RNA: ENST00000560634.1

CSPG4P11-201, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 11, humanhuman

BASIC

Gene CSPG4P11, Length 4,910 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P11-201ENST00000560634 TAF15Q92804 592 aaKnown RBP eCLIP11.45□□□□□ -0.58
CSPG4P11-201ENST00000560634 OR5AC2Q9NZP5 309 aa11.45□□□□□ -0.58
CSPG4P11-201ENST00000560634 DDX60LQ5H9U9 1706 aaKnown RBP11.45□□□□□ -0.58
CSPG4P11-201ENST00000560634 A0A0J9YW62 118 aa11.45□□□□□ -0.58
CSPG4P11-201ENST00000560634 WISP3O95389 354 aaPredicted RBP11.45□□□□□ -0.58
CSPG4P11-201ENST00000560634 TRGC2P03986 189 aa11.45□□□□□ -0.58
CSPG4P11-201ENST00000560634 MPV17P39210 176 aa11.45□□□□□ -0.58
CSPG4P11-201ENST00000560634 LIMS1P48059 325 aa11.45□□□□□ -0.58
CSPG4P11-201ENST00000560634 OR4A47Q6IF82 309 aa11.45□□□□□ -0.58
CSPG4P11-201ENST00000560634 ZNF714Q96N38 554 aa11.45□□□□□ -0.58
CSPG4P11-201ENST00000560634 SPOCK3Q9BQ16 436 aa11.45□□□□□ -0.58
CSPG4P11-201ENST00000560634 CFDP00746 253 aaPredicted RBP11.45□□□□□ -0.58
CSPG4P11-201ENST00000560634 CD74P04233 296 aa11.45□□□□□ -0.58
CSPG4P11-201ENST00000560634 CD200R1LQ6Q8B3 271 aa11.45□□□□□ -0.58
CSPG4P11-201ENST00000560634 OR1P1Q8NH06 330 aa11.45□□□□□ -0.58
CSPG4P11-201ENST00000560634 DUSP15Q9H1R2 295 aaPredicted RBP11.45□□□□□ -0.58
CSPG4P11-201ENST00000560634 HSPB7Q9UBY9 170 aa11.45□□□□□ -0.58
CSPG4P11-201ENST00000560634 KLHDC2Q9Y2U9 406 aa11.45□□□□□ -0.58
CSPG4P11-201ENST00000560634 B4E171 279 aa11.44□□□□□ -0.58
CSPG4P11-201ENST00000560634 ZNF324O75467 553 aaPredicted RBP11.44□□□□□ -0.58
CSPG4P11-201ENST00000560634 LEPROTL1O95214 131 aa11.44□□□□□ -0.58
CSPG4P11-201ENST00000560634 HOXB1P14653 301 aaPredicted RBP11.44□□□□□ -0.58
CSPG4P11-201ENST00000560634 CKS2P33552 79 aa11.44□□□□□ -0.58
CSPG4P11-201ENST00000560634 PSG4Q00888 419 aa11.44□□□□□ -0.58
CSPG4P11-201ENST00000560634 ECSCRQ19T08 205 aa11.44□□□□□ -0.58
CSPG4P11-201ENST00000560634 GPR61Q9BZJ8 451 aa11.44□□□□□ -0.58
CSPG4P11-201ENST00000560634 MBD1Q9UIS9 605 aaPredicted RBP11.44□□□□□ -0.58
CSPG4P11-201ENST00000560634 UPK3AO75631 287 aa11.44□□□□□ -0.58
CSPG4P11-201ENST00000560634 YBX2Q9Y2T7 364 aaKnown RBP11.44□□□□□ -0.58
CSPG4P11-201ENST00000560634 R4GN57 208 aa11.44□□□□□ -0.58
CSPG4P11-201ENST00000560634 SPINK2P20155 84 aa11.44□□□□□ -0.58
CSPG4P11-201ENST00000560634 C19orf54Q5BKX5 351 aa11.44□□□□□ -0.58
CSPG4P11-201ENST00000560634 EBLN2Q6P2I7 272 aa11.44□□□□□ -0.58
CSPG4P11-201ENST00000560634 SYT8Q8NBV8 401 aa11.44□□□□□ -0.58
CSPG4P11-201ENST00000560634 CHRNA10Q9GZZ6 450 aa11.44□□□□□ -0.58
CSPG4P11-201ENST00000560634 TREM2Q9NZC2 230 aa11.44□□□□□ -0.58
CSPG4P11-201ENST00000560634 IFNL4K9M1U5 179 aa11.43□□□□□ -0.58
CSPG4P11-201ENST00000560634 P2RY4P51582 365 aa11.43□□□□□ -0.58
CSPG4P11-201ENST00000560634 OR10J6PQ8NGY7 276 aa11.43□□□□□ -0.58
CSPG4P11-201ENST00000560634 TMEM171Q8WVE6 324 aa11.43□□□□□ -0.58
CSPG4P11-201ENST00000560634 ZNF318Q5VUA4 2279 aa11.43□□□□□ -0.58
CSPG4P11-201ENST00000560634 DLL1O00548 723 aa11.43□□□□□ -0.58
CSPG4P11-201ENST00000560634 F12P00748 615 aaPredicted RBP11.43□□□□□ -0.58
CSPG4P11-201ENST00000560634 GPR6P46095 362 aaPredicted RBP11.43□□□□□ -0.58
CSPG4P11-201ENST00000560634 LOXL3P58215 753 aa11.43□□□□□ -0.58
CSPG4P11-201ENST00000560634 RPL8P62917 257 aaKnown RBP11.43□□□□□ -0.58
CSPG4P11-201ENST00000560634 ZPLD1Q8TCW7 415 aa11.43□□□□□ -0.58
CSPG4P11-201ENST00000560634 C19orf24Q9BVV8 132 aa11.43□□□□□ -0.58
CSPG4P11-201ENST00000560634 PKIBQ9C010 78 aa11.43□□□□□ -0.58
CSPG4P11-201ENST00000560634 ZNF430Q9H8G1 570 aaPredicted RBP11.43□□□□□ -0.58
CSPG4P11-201ENST00000560634 NPDC1Q9NQX5 325 aaPredicted RBP11.43□□□□□ -0.58
CSPG4P11-201ENST00000560634 TAF1P21675 1872 aa11.43□□□□□ -0.58
CSPG4P11-201ENST00000560634 FBLL1A6NHQ2 334 aaKnown RBP11.43□□□□□ -0.58
CSPG4P11-201ENST00000560634 PLP1P60201 277 aa11.43□□□□□ -0.58
CSPG4P11-201ENST00000560634 FAM209BQ5JX69 171 aa11.43□□□□□ -0.58
CSPG4P11-201ENST00000560634 TMEM52Q8NDY8 209 aa11.43□□□□□ -0.58
CSPG4P11-201ENST00000560634 NRTNQ99748 197 aa11.43□□□□□ -0.58
CSPG4P11-201ENST00000560634 MYO5AQ9Y4I1 1855 aaKnown RBP11.43□□□□□ -0.58
CSPG4P11-201ENST00000560634 SS18L1O75177 396 aaPredicted RBP11.43□□□□□ -0.58
CSPG4P11-201ENST00000560634 UCP2P55851 309 aa11.43□□□□□ -0.58
CSPG4P11-201ENST00000560634 ZNF645Q8N7E2 425 aa11.43□□□□□ -0.58
CSPG4P11-201ENST00000560634 FAM216AQ8WUB2 273 aa11.43□□□□□ -0.58
CSPG4P11-201ENST00000560634 COPS9Q8WXC6 57 aa11.43□□□□□ -0.58
CSPG4P11-201ENST00000560634 SOSTQ9BQB4 213 aa11.43□□□□□ -0.58
CSPG4P11-201ENST00000560634 SFXN3Q9BWM7 321 aa11.43□□□□□ -0.58
CSPG4P11-201ENST00000560634 COL22A1Q8NFW1 1626 aaPredicted RBP11.43□□□□□ -0.58
CSPG4P11-201ENST00000560634 TRPM6Q9BX84 2022 aa11.42□□□□□ -0.58
CSPG4P11-201ENST00000560634 LOC389332A0A1B0GUA5 103 aa11.42□□□□□ -0.58
CSPG4P11-201ENST00000560634 SPINT1O43278 529 aa11.42□□□□□ -0.58
CSPG4P11-201ENST00000560634 NDUFA2O43678 99 aa11.42□□□□□ -0.58
CSPG4P11-201ENST00000560634 SLC25A34Q6PIV7 304 aa11.42□□□□□ -0.58
CSPG4P11-201ENST00000560634 PCGF1Q9BSM1 259 aa11.42□□□□□ -0.58
CSPG4P11-201ENST00000560634 DTX4Q9Y2E6 619 aa11.42□□□□□ -0.58
CSPG4P11-201ENST00000560634 CABIN1Q9Y6J0 2220 aa11.42□□□□□ -0.58
CSPG4P11-201ENST00000560634 PGPA6NDG6 321 aa11.42□□□□□ -0.58
CSPG4P11-201ENST00000560634 SCGB1A1P11684 91 aa11.42□□□□□ -0.58
CSPG4P11-201ENST00000560634 ID4P47928 161 aa11.42□□□□□ -0.58
CSPG4P11-201ENST00000560634 ATP5IP56385 69 aaPredicted RBP11.42□□□□□ -0.58
CSPG4P11-201ENST00000560634 SIPA1L3O60292 1781 aaPredicted RBP11.42□□□□□ -0.58
CSPG4P11-201ENST00000560634 SCN9AQ15858 1988 aa11.42□□□□□ -0.58
CSPG4P11-201ENST00000560634 LRP5O75197 1615 aa11.42□□□□□ -0.58
CSPG4P11-201ENST00000560634 IGHV3OR15-7A0A075B7D8 119 aa11.42□□□□□ -0.58
CSPG4P11-201ENST00000560634 PRF1P14222 555 aa11.42□□□□□ -0.58
CSPG4P11-201ENST00000560634 RPS11P62280 158 aaKnown RBP eCLIP11.42□□□□□ -0.58
CSPG4P11-201ENST00000560634 SPATA45Q537H7 98 aa11.42□□□□□ -0.58
CSPG4P11-201ENST00000560634 FAM214BQ7L5A3 538 aa11.42□□□□□ -0.58
CSPG4P11-201ENST00000560634 LSM10Q969L4 123 aaKnown RBP11.42□□□□□ -0.58
CSPG4P11-201ENST00000560634 CRISPLD2Q9H0B8 497 aa11.42□□□□□ -0.58
CSPG4P11-201ENST00000560634 FOLR2P14207 255 aa11.42□□□□□ -0.58
CSPG4P11-201ENST00000560634 DDTP30046 118 aa11.42□□□□□ -0.58
CSPG4P11-201ENST00000560634 TMEM30BQ3MIR4 351 aa11.42□□□□□ -0.58
CSPG4P11-201ENST00000560634 ZNF385CQ66K41 422 aaPredicted RBP11.42□□□□□ -0.58
CSPG4P11-201ENST00000560634 SHISA5Q8N114 240 aa11.42□□□□□ -0.58
CSPG4P11-201ENST00000560634 ZNF488Q96MN9 340 aa11.42□□□□□ -0.58
CSPG4P11-201ENST00000560634 TTTY12Q9BZ98 90 aa11.42□□□□□ -0.58
CSPG4P11-201ENST00000560634 WBP1LQ9NX94 342 aa11.42□□□□□ -0.58
CSPG4P11-201ENST00000560634 SMCHD1A6NHR9 2005 aa11.42□□□□□ -0.58
CSPG4P11-201ENST00000560634 LOC107984156A0A0G2JMH3 177 aa11.41□□□□□ -0.58
CSPG4P11-201ENST00000560634 REG1BP48304 166 aa11.41□□□□□ -0.58
CSPG4P11-201ENST00000560634 HSPE1P61604 102 aaKnown RBP11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms