RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 hCG_2014768A0A024R1R8 64 aa7.52□□□□□ -1.21
LDLR-211ENST00000560173 A0A1B0GUS0 222 aa7.52□□□□□ -1.21
LDLR-211ENST00000560173 A0A1W2PPE3 182 aa7.52□□□□□ -1.21
LDLR-211ENST00000560173 A0A1W2PPI3 338 aa7.52□□□□□ -1.21
LDLR-211ENST00000560173 MFNGO00587 321 aa7.52□□□□□ -1.21
LDLR-211ENST00000560173 SLC31A2O15432 143 aa7.52□□□□□ -1.21
LDLR-211ENST00000560173 HIST1H1DP16402 221 aaKnown RBP7.52□□□□□ -1.21
LDLR-211ENST00000560173 ARHGDIBP52566 201 aa7.52□□□□□ -1.21
LDLR-211ENST00000560173 HTD2P86397 168 aa7.52□□□□□ -1.21
LDLR-211ENST00000560173 DIAPH2-AS1Q14236 149 aa7.52□□□□□ -1.21
LDLR-211ENST00000560173 GNMTQ14749 295 aa7.52□□□□□ -1.21
LDLR-211ENST00000560173 CCDC144NLQ6NUI1 221 aa7.52□□□□□ -1.21
LDLR-211ENST00000560173 Q6ZSV7 163 aa7.52□□□□□ -1.21
LDLR-211ENST00000560173 SLC25A48Q6ZT89 311 aaKnown RBP7.52□□□□□ -1.21
LDLR-211ENST00000560173 TMEM219Q86XT9 240 aa7.52□□□□□ -1.21
LDLR-211ENST00000560173 SNX29P2Q8IUI4 249 aa7.52□□□□□ -1.21
LDLR-211ENST00000560173 C3orf56Q8N813 242 aa7.52□□□□□ -1.21
LDLR-211ENST00000560173 DUSP18Q8NEJ0 188 aa7.52□□□□□ -1.21
LDLR-211ENST00000560173 OR10V1Q8NGI7 309 aa7.52□□□□□ -1.21
LDLR-211ENST00000560173 OR10X1Q8NGY0 326 aa7.52□□□□□ -1.21
LDLR-211ENST00000560173 TOMM40LQ969M1 308 aa7.52□□□□□ -1.21
LDLR-211ENST00000560173 RPEQ96AT9 228 aa7.52□□□□□ -1.21
LDLR-211ENST00000560173 SLC25A38Q96DW6 304 aa7.52□□□□□ -1.21
LDLR-211ENST00000560173 ABHD1Q96SE0 405 aa7.52□□□□□ -1.21
LDLR-211ENST00000560173 CMSS1Q9BQ75 279 aaKnown RBP7.52□□□□□ -1.21
LDLR-211ENST00000560173 OCSTAMPQ9BR26 566 aa7.52□□□□□ -1.21
LDLR-211ENST00000560173 C16orf95Q9H693 158 aa7.52□□□□□ -1.21
LDLR-211ENST00000560173 SCPEP1Q9HB40 452 aa7.52□□□□□ -1.21
LDLR-211ENST00000560173 BEX1Q9HBH7 125 aa7.52□□□□□ -1.21
LDLR-211ENST00000560173 RAB18Q9NP72 206 aa7.52□□□□□ -1.21
LDLR-211ENST00000560173 ZNF107Q9UII5 783 aaPredicted RBP7.52□□□□□ -1.21
LDLR-211ENST00000560173 JPT1Q9UK76 154 aa7.52□□□□□ -1.21
LDLR-211ENST00000560173 PITPNC1Q9UKF7 332 aa7.52□□□□□ -1.21
LDLR-211ENST00000560173 MRPS7Q9Y2R9 242 aaKnown RBP7.52□□□□□ -1.21
LDLR-211ENST00000560173 KCNK7Q9Y2U2 307 aa7.52□□□□□ -1.21
LDLR-211ENST00000560173 CLPSL1A2RUU4 121 aa7.51□□□□□ -1.21
LDLR-211ENST00000560173 POM121CA8CG34 1229 aa7.51□□□□□ -1.21
LDLR-211ENST00000560173 SERPINE3A8MV23 424 aa7.51□□□□□ -1.21
LDLR-211ENST00000560173 HSD17B6O14756 317 aa7.51□□□□□ -1.21
LDLR-211ENST00000560173 TSPAN9O75954 239 aa7.51□□□□□ -1.21
LDLR-211ENST00000560173 GNB3P16520 340 aa7.51□□□□□ -1.21
LDLR-211ENST00000560173 BRS3P32247 399 aa7.51□□□□□ -1.21
LDLR-211ENST00000560173 PPP1CCP36873 323 aaKnown RBP7.51□□□□□ -1.21
LDLR-211ENST00000560173 RAB7AP51149 207 aa7.51□□□□□ -1.21
LDLR-211ENST00000560173 ZNF134P52741 427 aa7.51□□□□□ -1.21
LDLR-211ENST00000560173 ZNF137PP52743 207 aa7.51□□□□□ -1.21
LDLR-211ENST00000560173 TAS2R20P59543 309 aa7.51□□□□□ -1.21
LDLR-211ENST00000560173 ACTBP60709 375 aa7.51□□□□□ -1.21
LDLR-211ENST00000560173 HLA-DRB3P79483 266 aa7.51□□□□□ -1.21
LDLR-211ENST00000560173 FBLN7Q53RD9 439 aa7.51□□□□□ -1.21
LDLR-211ENST00000560173 CT45A1Q5HYN5 189 aa7.51□□□□□ -1.21
LDLR-211ENST00000560173 LY6G6FQ5SQ64 297 aa7.51□□□□□ -1.21
LDLR-211ENST00000560173 NRARPQ7Z6K4 114 aa7.51□□□□□ -1.21
LDLR-211ENST00000560173 OR8H3Q8N146 312 aa7.51□□□□□ -1.21
LDLR-211ENST00000560173 OR52L2PQ8NGH6 319 aa7.51□□□□□ -1.21
LDLR-211ENST00000560173 OR4C13Q8NGP0 309 aa7.51□□□□□ -1.21
LDLR-211ENST00000560173 CT45A3Q8NHU0 189 aa7.51□□□□□ -1.21
LDLR-211ENST00000560173 LINC01006Q8NI28 216 aa7.51□□□□□ -1.21
LDLR-211ENST00000560173 CFHR4Q92496 578 aa7.51□□□□□ -1.21
LDLR-211ENST00000560173 TRIM63Q969Q1 353 aa7.51□□□□□ -1.21
LDLR-211ENST00000560173 ST6GALNAC6Q969X2 333 aa7.51□□□□□ -1.21
LDLR-211ENST00000560173 GALMQ96C23 342 aa7.51□□□□□ -1.21
LDLR-211ENST00000560173 ZNF747Q9BV97 191 aa7.51□□□□□ -1.21
LDLR-211ENST00000560173 C11orf54Q9H0W9 315 aaPredicted RBP7.51□□□□□ -1.21
LDLR-211ENST00000560173 ATG5Q9H1Y0 275 aa7.51□□□□□ -1.21
LDLR-211ENST00000560173 RANBP3Q9H6Z4 567 aaPredicted RBP7.51□□□□□ -1.21
LDLR-211ENST00000560173 Q9N2K0 584 aa7.51□□□□□ -1.21
LDLR-211ENST00000560173 OR2S2Q9NQN1 319 aa7.51□□□□□ -1.21
LDLR-211ENST00000560173 MGAT4AQ9UM21 535 aa7.51□□□□□ -1.21
LDLR-211ENST00000560173 TRRAPQ9Y4A5 3859 aa7.51□□□□□ -1.21
LDLR-211ENST00000560173 TIMM23O14925 209 aa7.5□□□□□ -1.21
LDLR-211ENST00000560173 PLA2G10O15496 165 aa7.5□□□□□ -1.21
LDLR-211ENST00000560173 YPEL1O60688 119 aa7.5□□□□□ -1.21
LDLR-211ENST00000560173 RBBP9O75884 186 aa7.5□□□□□ -1.21
LDLR-211ENST00000560173 RGS11O94810 467 aa7.5□□□□□ -1.21
LDLR-211ENST00000560173 DHFRP00374 187 aa7.5□□□□□ -1.21
LDLR-211ENST00000560173 FCGR3AP08637 254 aa7.5□□□□□ -1.21
LDLR-211ENST00000560173 CSF1P09603 554 aa7.5□□□□□ -1.21
LDLR-211ENST00000560173 CD3GP09693 182 aa7.5□□□□□ -1.21
LDLR-211ENST00000560173 TRAPPC2P0DI81 140 aa7.5□□□□□ -1.21
LDLR-211ENST00000560173 TRAPPC2BP0DI82 140 aa7.5□□□□□ -1.21
LDLR-211ENST00000560173 CD24P25063 80 aa7.5□□□□□ -1.21
LDLR-211ENST00000560173 IL3RAP26951 378 aa7.5□□□□□ -1.21
LDLR-211ENST00000560173 PRSS3P35030 304 aa7.5□□□□□ -1.21
LDLR-211ENST00000560173 ZNF816Q0VGE8 651 aaPredicted RBP7.5□□□□□ -1.21
LDLR-211ENST00000560173 HABP2Q14520 560 aaPredicted RBP7.5□□□□□ -1.21
LDLR-211ENST00000560173 MORN2Q502X0 79 aa7.5□□□□□ -1.21
LDLR-211ENST00000560173 DRAM1Q8N682 238 aa7.5□□□□□ -1.21
LDLR-211ENST00000560173 OR56B4Q8NH76 319 aa7.5□□□□□ -1.21
LDLR-211ENST00000560173 CHAC2Q8WUX2 184 aa7.5□□□□□ -1.21
LDLR-211ENST00000560173 WFDC12Q8WWY7 111 aa7.5□□□□□ -1.21
LDLR-211ENST00000560173 IL1F10Q8WWZ1 152 aa7.5□□□□□ -1.21
LDLR-211ENST00000560173 YPEL2Q96QA6 119 aa7.5□□□□□ -1.21
LDLR-211ENST00000560173 ABHD14AQ9BUJ0 271 aa7.5□□□□□ -1.21
LDLR-211ENST00000560173 NPFFR1Q9GZQ6 430 aa7.5□□□□□ -1.21
LDLR-211ENST00000560173 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP7.5□□□□□ -1.21
LDLR-211ENST00000560173 RBMX2Q9Y388 322 aaKnown RBP7.5□□□□□ -1.21
LDLR-211ENST00000560173 PKD1L1Q8TDX9 2849 aa7.49□□□□□ -1.21
LDLR-211ENST00000560173 IGHV1-3A0A0C4DH29 117 aa7.49□□□□□ -1.21
LDLR-211ENST00000560173 IGKV1-6A0A0C4DH72 117 aa7.49□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 156.9 ms