RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 IFNA2P01563 188 aa7.5□□□□□ -1.21
LDLR-210ENST00000559340 IGHV3-7P01780 117 aa7.5□□□□□ -1.21
LDLR-210ENST00000559340 CD74P04233 296 aa7.5□□□□□ -1.21
LDLR-210ENST00000559340 FCER2P06734 321 aa7.5□□□□□ -1.21
LDLR-210ENST00000559340 HRH1P35367 487 aa7.5□□□□□ -1.21
LDLR-210ENST00000559340 SAA4P35542 130 aa7.5□□□□□ -1.21
LDLR-210ENST00000559340 ECI1P42126 302 aa7.5□□□□□ -1.21
LDLR-210ENST00000559340 GPR12P47775 334 aa7.5□□□□□ -1.21
LDLR-210ENST00000559340 GNMTQ14749 295 aa7.5□□□□□ -1.21
LDLR-210ENST00000559340 HERPUD1Q15011 391 aa7.5□□□□□ -1.21
LDLR-210ENST00000559340 ZNF79Q15937 498 aa7.5□□□□□ -1.21
LDLR-210ENST00000559340 AANATQ16613 207 aa7.5□□□□□ -1.21
LDLR-210ENST00000559340 ZNF57Q68EA5 555 aaPredicted RBP7.5□□□□□ -1.21
LDLR-210ENST00000559340 BRD3OSQ6XYD6 125 aa7.5□□□□□ -1.21
LDLR-210ENST00000559340 OR8H3Q8N146 312 aa7.5□□□□□ -1.21
LDLR-210ENST00000559340 ZBTB34Q8NCN2 500 aa7.5□□□□□ -1.21
LDLR-210ENST00000559340 ZNF439Q8NDP4 499 aa7.5□□□□□ -1.21
LDLR-210ENST00000559340 OR4P4Q8NGL7 312 aa7.5□□□□□ -1.21
LDLR-210ENST00000559340 LEAP2Q969E1 77 aa7.5□□□□□ -1.21
LDLR-210ENST00000559340 TOMM40LQ969M1 308 aa7.5□□□□□ -1.21
LDLR-210ENST00000559340 SCGB3A2Q96PL1 93 aa7.5□□□□□ -1.21
LDLR-210ENST00000559340 C7orf50Q9BRJ6 194 aaKnown RBP7.5□□□□□ -1.21
LDLR-210ENST00000559340 MEGF9Q9H1U4 602 aa7.5□□□□□ -1.21
LDLR-210ENST00000559340 DPAGT1Q9H3H5 408 aa7.5□□□□□ -1.21
LDLR-210ENST00000559340 AKIP1Q9NQ31 210 aa7.5□□□□□ -1.21
LDLR-210ENST00000559340 ABCB10Q9NRK6 738 aa7.5□□□□□ -1.21
LDLR-210ENST00000559340 OR1A1Q9P1Q5 309 aa7.5□□□□□ -1.21
LDLR-210ENST00000559340 SCP2D1Q9UJQ7 156 aa7.5□□□□□ -1.21
LDLR-210ENST00000559340 NIPBLQ6KC79 2804 aaeCLIP7.5□□□□□ -1.21
LDLR-210ENST00000559340 A0A0A6YYJ9 748 aa7.49□□□□□ -1.21
LDLR-210ENST00000559340 A0A1W2PPE3 182 aa7.49□□□□□ -1.21
LDLR-210ENST00000559340 NAP1L6A6NFF2 107 aa7.49□□□□□ -1.21
LDLR-210ENST00000559340 TUSC2O75896 110 aa7.49□□□□□ -1.21
LDLR-210ENST00000559340 PPYP01298 95 aa7.49□□□□□ -1.21
LDLR-210ENST00000559340 CD3DP04234 171 aa7.49□□□□□ -1.21
LDLR-210ENST00000559340 AMY2AP04746 511 aa7.49□□□□□ -1.21
LDLR-210ENST00000559340 OR8U9P0C7N5 309 aa7.49□□□□□ -1.21
LDLR-210ENST00000559340 NFYAP23511 347 aaPredicted RBP7.49□□□□□ -1.21
LDLR-210ENST00000559340 RFX2P48378 723 aa7.49□□□□□ -1.21
LDLR-210ENST00000559340 ZNF134P52741 427 aa7.49□□□□□ -1.21
LDLR-210ENST00000559340 ZNF137PP52743 207 aa7.49□□□□□ -1.21
LDLR-210ENST00000559340 DLX1P56177 255 aa7.49□□□□□ -1.21
LDLR-210ENST00000559340 TAGLNQ01995 201 aaKnown RBP7.49□□□□□ -1.21
LDLR-210ENST00000559340 PRB3Q04118 309 aaPredicted RBP7.49□□□□□ -1.21
LDLR-210ENST00000559340 ZNF816Q0VGE8 651 aaPredicted RBP7.49□□□□□ -1.21
LDLR-210ENST00000559340 LSAMPQ13449 338 aa7.49□□□□□ -1.21
LDLR-210ENST00000559340 MSMO1Q15800 293 aa7.49□□□□□ -1.21
LDLR-210ENST00000559340 SSX2Q16385 188 aa7.49□□□□□ -1.21
LDLR-210ENST00000559340 TPTE2P1Q5T6R2 138 aa7.49□□□□□ -1.21
LDLR-210ENST00000559340 RUSC1-AS1Q66K80 236 aa7.49□□□□□ -1.21
LDLR-210ENST00000559340 IL17RELQ6ZVW7 336 aa7.49□□□□□ -1.21
LDLR-210ENST00000559340 C5orf24Q7Z6I8 188 aa7.49□□□□□ -1.21
LDLR-210ENST00000559340 TGIF2LXQ8IUE1 241 aa7.49□□□□□ -1.21
LDLR-210ENST00000559340 MFSD4AQ8N468 514 aa7.49□□□□□ -1.21
LDLR-210ENST00000559340 OR8U1Q8NH10 309 aa7.49□□□□□ -1.21
LDLR-210ENST00000559340 ADTRPQ96IZ2 230 aa7.49□□□□□ -1.21
LDLR-210ENST00000559340 AKR1E2Q96JD6 320 aa7.49□□□□□ -1.21
LDLR-210ENST00000559340 TSC22D3Q99576 134 aa7.49□□□□□ -1.21
LDLR-210ENST00000559340 PRRT1Q99946 306 aa7.49□□□□□ -1.21
LDLR-210ENST00000559340 ZNF2Q9BSG1 426 aaPredicted RBP7.49□□□□□ -1.21
LDLR-210ENST00000559340 OCEL1Q9H607 264 aa7.49□□□□□ -1.21
LDLR-210ENST00000559340 A0A0U1RQK1 487 aa7.48□□□□□ -1.21
LDLR-210ENST00000559340 LY6LH3BQJ8 138 aa7.48□□□□□ -1.21
LDLR-210ENST00000559340 HSD17B6O14756 317 aa7.48□□□□□ -1.21
LDLR-210ENST00000559340 ST8SIA5O15466 376 aa7.48□□□□□ -1.21
LDLR-210ENST00000559340 AADACP22760 399 aa7.48□□□□□ -1.21
LDLR-210ENST00000559340 UCP3P55916 312 aa7.48□□□□□ -1.21
LDLR-210ENST00000559340 CBX3Q13185 183 aa7.48□□□□□ -1.21
LDLR-210ENST00000559340 MOB3BQ86TA1 216 aa7.48□□□□□ -1.21
LDLR-210ENST00000559340 CMTM1Q8IZ96 169 aa7.48□□□□□ -1.21
LDLR-210ENST00000559340 TMEM86BQ8N661 226 aa7.48□□□□□ -1.21
LDLR-210ENST00000559340 ZNF645Q8N7E2 425 aa7.48□□□□□ -1.21
LDLR-210ENST00000559340 OR5R1Q8NH85 324 aa7.48□□□□□ -1.21
LDLR-210ENST00000559340 TERB2Q8NHR7 220 aa7.48□□□□□ -1.21
LDLR-210ENST00000559340 ZFAND1Q8TCF1 268 aa7.48□□□□□ -1.21
LDLR-210ENST00000559340 MOB3AQ96BX8 217 aa7.48□□□□□ -1.21
LDLR-210ENST00000559340 TINAGL1Q9GZM7 467 aaPredicted RBP7.48□□□□□ -1.21
LDLR-210ENST00000559340 SLC5A7Q9GZV3 580 aa7.48□□□□□ -1.21
LDLR-210ENST00000559340 OR2D2Q9H210 308 aa7.48□□□□□ -1.21
LDLR-210ENST00000559340 PRDM13Q9H4Q3 707 aa7.48□□□□□ -1.21
LDLR-210ENST00000559340 RNF150Q9ULK6 438 aa7.48□□□□□ -1.21
LDLR-210ENST00000559340 HILPDAQ9Y5L2 63 aa7.48□□□□□ -1.21
LDLR-210ENST00000559340 FN1P02751 2386 aaKnown RBP7.48□□□□□ -1.21
LDLR-210ENST00000559340 NSD1Q96L73 2696 aaPredicted RBP7.47□□□□□ -1.21
LDLR-210ENST00000559340 RNF212BA8MTL3 300 aa7.47□□□□□ -1.21
LDLR-210ENST00000559340 VGLL3A8MV65 326 aa7.47□□□□□ -1.21
LDLR-210ENST00000559340 M0QYG6 137 aa7.47□□□□□ -1.21
LDLR-210ENST00000559340 SLC31A2O15432 143 aa7.47□□□□□ -1.21
LDLR-210ENST00000559340 FAM106CPP0CH98 169 aa7.47□□□□□ -1.21
LDLR-210ENST00000559340 RRASP10301 218 aa7.47□□□□□ -1.21
LDLR-210ENST00000559340 IL7P13232 177 aa7.47□□□□□ -1.21
LDLR-210ENST00000559340 PGAM2P15259 253 aa7.47□□□□□ -1.21
LDLR-210ENST00000559340 MC5RP33032 325 aa7.47□□□□□ -1.21
LDLR-210ENST00000559340 THBS3P49746 956 aa7.47□□□□□ -1.21
LDLR-210ENST00000559340 DYNLT3P51808 116 aa7.47□□□□□ -1.21
LDLR-210ENST00000559340 FXYD4P59646 89 aa7.47□□□□□ -1.21
LDLR-210ENST00000559340 KLF9Q13886 244 aaPredicted RBP7.47□□□□□ -1.21
LDLR-210ENST00000559340 LRRC75BQ2VPJ9 315 aa7.47□□□□□ -1.21
LDLR-210ENST00000559340 DEFB112Q30KQ8 113 aa7.47□□□□□ -1.21
LDLR-210ENST00000559340 SCGB2B2Q4G0G5 96 aa7.47□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms