RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 KIR2DS4P43632 304 aa4.25□□□□□ -1.73
LDLR-209ENST00000558528 CEBPDP49716 269 aaPredicted RBP4.25□□□□□ -1.73
LDLR-209ENST00000558528 PPOXP50336 477 aa4.25□□□□□ -1.73
LDLR-209ENST00000558528 TMEM50BP56557 158 aa4.25□□□□□ -1.73
LDLR-209ENST00000558528 ERVK11-1P61568 191 aa4.25□□□□□ -1.73
LDLR-209ENST00000558528 TSPAN5P62079 268 aa4.25□□□□□ -1.73
LDLR-209ENST00000558528 BTG1P62324 171 aa4.25□□□□□ -1.73
LDLR-209ENST00000558528 MRPS11P82912 194 aaKnown RBP4.25□□□□□ -1.73
LDLR-209ENST00000558528 TFF3Q07654 80 aa4.25□□□□□ -1.73
LDLR-209ENST00000558528 MAB21L1Q13394 359 aa4.25□□□□□ -1.73
LDLR-209ENST00000558528 KIR2DS1Q14954 304 aa4.25□□□□□ -1.73
LDLR-209ENST00000558528 CDK10Q15131 360 aa4.25□□□□□ -1.73
LDLR-209ENST00000558528 MICBQ29980 383 aa4.25□□□□□ -1.73
LDLR-209ENST00000558528 CHRFAM7AQ494W8 412 aa4.25□□□□□ -1.73
LDLR-209ENST00000558528 RNASE10Q5GAN6 216 aaKnown RBP4.25□□□□□ -1.73
LDLR-209ENST00000558528 OLFML2AQ68BL7 652 aa4.25□□□□□ -1.73
LDLR-209ENST00000558528 OR10K2Q6IF99 312 aa4.25□□□□□ -1.73
LDLR-209ENST00000558528 STEAP1BQ6NZ63 245 aa4.25□□□□□ -1.73
LDLR-209ENST00000558528 ZNF782Q6ZMW2 699 aaPredicted RBP4.25□□□□□ -1.73
LDLR-209ENST00000558528 Q6ZS49 121 aa4.25□□□□□ -1.73
LDLR-209ENST00000558528 MOB1BQ7L9L4 216 aa4.25□□□□□ -1.73
LDLR-209ENST00000558528 TRAPPC6BQ86SZ2 158 aa4.25□□□□□ -1.73
LDLR-209ENST00000558528 ZNF554Q86TJ5 538 aa4.25□□□□□ -1.73
LDLR-209ENST00000558528 HOGA1Q86XE5 327 aa4.25□□□□□ -1.73
LDLR-209ENST00000558528 PRIMA1Q86XR5 153 aa4.25□□□□□ -1.73
LDLR-209ENST00000558528 ARRDC1Q8N5I2 433 aa4.25□□□□□ -1.73
LDLR-209ENST00000558528 OR10K1Q8NGX5 313 aa4.25□□□□□ -1.73
LDLR-209ENST00000558528 NEK7Q8TDX7 302 aa4.25□□□□□ -1.73
LDLR-209ENST00000558528 CREB3L1Q96BA8 519 aa4.25□□□□□ -1.73
LDLR-209ENST00000558528 PPP1R14BQ96C90 147 aa4.25□□□□□ -1.73
LDLR-209ENST00000558528 PIK3IP1Q96FE7 263 aa4.25□□□□□ -1.73
LDLR-209ENST00000558528 MED30Q96HR3 178 aa4.25□□□□□ -1.73
LDLR-209ENST00000558528 ARHGAP5-AS1Q96IT6 56 aa4.25□□□□□ -1.73
LDLR-209ENST00000558528 OR2V2Q96R30 315 aa4.25□□□□□ -1.73
LDLR-209ENST00000558528 NRIP2Q9BQI9 281 aa4.25□□□□□ -1.73
LDLR-209ENST00000558528 DNTTIP1Q9H147 329 aa4.25□□□□□ -1.73
LDLR-209ENST00000558528 ZNF286AQ9HBT8 521 aa4.25□□□□□ -1.73
LDLR-209ENST00000558528 HES4Q9HCC6 221 aa4.25□□□□□ -1.73
LDLR-209ENST00000558528 HRASLSQ9HDD0 168 aa4.25□□□□□ -1.73
LDLR-209ENST00000558528 MYOZ1Q9NP98 299 aaPredicted RBP4.25□□□□□ -1.73
LDLR-209ENST00000558528 YAE1D1Q9NRH1 226 aa4.25□□□□□ -1.73
LDLR-209ENST00000558528 CBLN4Q9NTU7 201 aa4.25□□□□□ -1.73
LDLR-209ENST00000558528 C1orf123Q9NWV4 160 aa4.25□□□□□ -1.73
LDLR-209ENST00000558528 KCNIP1Q9NZI2 227 aa4.25□□□□□ -1.73
LDLR-209ENST00000558528 KLK11Q9UBX7 282 aa4.25□□□□□ -1.73
LDLR-209ENST00000558528 FZR1Q9UM11 496 aa4.25□□□□□ -1.73
LDLR-209ENST00000558528 POLEQ07864 2286 aa4.25□□□□□ -1.73
LDLR-209ENST00000558528 TNRC6AQ8NDV7 1962 aaKnown RBP4.25□□□□□ -1.73
LDLR-209ENST00000558528 NCKAP5O14513 1909 aa4.25□□□□□ -1.73
LDLR-209ENST00000558528 DIDO1Q9BTC0 2240 aaKnown RBP4.24□□□□□ -1.73
LDLR-209ENST00000558528 TRBV6-6A0A0A6YYG2 114 aa4.24□□□□□ -1.73
LDLR-209ENST00000558528 IGHV4-28A0A0C4DH34 117 aa4.24□□□□□ -1.73
LDLR-209ENST00000558528 TMEM235A6NFC5 223 aa4.24□□□□□ -1.73
LDLR-209ENST00000558528 FOXI3A8MTJ6 420 aaPredicted RBP4.24□□□□□ -1.73
LDLR-209ENST00000558528 SRRM5B3KS81 715 aa4.24□□□□□ -1.73
LDLR-209ENST00000558528 E7EQL1 145 aa4.24□□□□□ -1.73
LDLR-209ENST00000558528 H0YL77 283 aa4.24□□□□□ -1.73
LDLR-209ENST00000558528 TMEM178BH3BS89 294 aa4.24□□□□□ -1.73
LDLR-209ENST00000558528 PLA2G10O15496 165 aa4.24□□□□□ -1.73
LDLR-209ENST00000558528 SYNGR1O43759 233 aa4.24□□□□□ -1.73
LDLR-209ENST00000558528 RHBDL1O75783 438 aa4.24□□□□□ -1.73
LDLR-209ENST00000558528 HAND1O96004 215 aa4.24□□□□□ -1.73
LDLR-209ENST00000558528 LHBP01229 141 aa4.24□□□□□ -1.73
LDLR-209ENST00000558528 IGHV1-46P01743 117 aa4.24□□□□□ -1.73
LDLR-209ENST00000558528 CD74P04233 296 aa4.24□□□□□ -1.73
LDLR-209ENST00000558528 CSN2P05814 226 aa4.24□□□□□ -1.73
LDLR-209ENST00000558528 CD99P14209 185 aa4.24□□□□□ -1.73
LDLR-209ENST00000558528 GP9P14770 177 aa4.24□□□□□ -1.73
LDLR-209ENST00000558528 GZMHP20718 246 aa4.24□□□□□ -1.73
LDLR-209ENST00000558528 ANOS1P23352 680 aa4.24□□□□□ -1.73
LDLR-209ENST00000558528 S100GP29377 79 aa4.24□□□□□ -1.73
LDLR-209ENST00000558528 SLC6A1P30531 599 aa4.24□□□□□ -1.73
LDLR-209ENST00000558528 NPBWR2P48146 333 aa4.24□□□□□ -1.73
LDLR-209ENST00000558528 RFX2P48378 723 aa4.24□□□□□ -1.73
LDLR-209ENST00000558528 RAB25P57735 213 aa4.24□□□□□ -1.73
LDLR-209ENST00000558528 ARPC4P59998 168 aa4.24□□□□□ -1.73
LDLR-209ENST00000558528 RPL23AP62750 156 aaKnown RBP4.24□□□□□ -1.73
LDLR-209ENST00000558528 DGCR2P98153 550 aa4.24□□□□□ -1.73
LDLR-209ENST00000558528 IFITM3Q01628 133 aa4.24□□□□□ -1.73
LDLR-209ENST00000558528 KLF9Q13886 244 aaPredicted RBP4.24□□□□□ -1.73
LDLR-209ENST00000558528 RBMS2Q15434 407 aaKnown RBP4.24□□□□□ -1.73
LDLR-209ENST00000558528 SURF2Q15527 256 aaPredicted RBP4.24□□□□□ -1.73
LDLR-209ENST00000558528 ALKBH6Q3KRA9 238 aa4.24□□□□□ -1.73
LDLR-209ENST00000558528 VAX1Q5SQQ9 334 aa4.24□□□□□ -1.73
LDLR-209ENST00000558528 C6orf183Q5T699 404 aa4.24□□□□□ -1.73
LDLR-209ENST00000558528 SLC35E4Q6ICL7 350 aa4.24□□□□□ -1.73
LDLR-209ENST00000558528 LPCAT3Q6P1A2 487 aa4.24□□□□□ -1.73
LDLR-209ENST00000558528 CRIP3Q6Q6R5 217 aa4.24□□□□□ -1.73
LDLR-209ENST00000558528 WDR82Q6UXN9 313 aa4.24□□□□□ -1.73
LDLR-209ENST00000558528 ACP7Q6ZNF0 438 aa4.24□□□□□ -1.73
LDLR-209ENST00000558528 Q6ZR03 302 aa4.24□□□□□ -1.73
LDLR-209ENST00000558528 GDPD3Q7L5L3 318 aa4.24□□□□□ -1.73
LDLR-209ENST00000558528 SLC36A1Q7Z2H8 476 aa4.24□□□□□ -1.73
LDLR-209ENST00000558528 GLCCI1Q86VQ1 547 aa4.24□□□□□ -1.73
LDLR-209ENST00000558528 LRP11Q86VZ4 500 aa4.24□□□□□ -1.73
LDLR-209ENST00000558528 MMD2Q8IY49 270 aa4.24□□□□□ -1.73
LDLR-209ENST00000558528 BPIFB2Q8N4F0 458 aa4.24□□□□□ -1.73
LDLR-209ENST00000558528 ZNF561Q8N587 486 aa4.24□□□□□ -1.73
LDLR-209ENST00000558528 GBGT1Q8N5D6 347 aa4.24□□□□□ -1.73
LDLR-209ENST00000558528 ZNF565Q8N9K5 539 aa4.24□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms