RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 TMEM56-RWDD3S4R434 201 aa9.65□□□□□ -0.86
LDLR-208ENST00000558518 A0A1W2PPV4 95 aa9.65□□□□□ -0.86
LDLR-208ENST00000558518 P04436 131 aa9.65□□□□□ -0.86
LDLR-208ENST00000558518 CFIP05156 583 aa9.65□□□□□ -0.86
LDLR-208ENST00000558518 UCP1P25874 307 aa9.65□□□□□ -0.86
LDLR-208ENST00000558518 CLDN15P56746 228 aa9.65□□□□□ -0.86
LDLR-208ENST00000558518 HIST3H3Q16695 136 aa9.65□□□□□ -0.86
LDLR-208ENST00000558518 KIAA1644Q3SXP7 199 aa9.65□□□□□ -0.86
LDLR-208ENST00000558518 DMRTA1Q5VZB9 504 aa9.65□□□□□ -0.86
LDLR-208ENST00000558518 KCNIP4Q6PIL6 250 aa9.65□□□□□ -0.86
LDLR-208ENST00000558518 SGMS2Q8NHU3 365 aa9.65□□□□□ -0.86
LDLR-208ENST00000558518 RAB40CQ96S21 281 aa9.65□□□□□ -0.86
LDLR-208ENST00000558518 hCG_38984A0A1B0GV85 526 aa9.65□□□□□ -0.86
LDLR-208ENST00000558518 A0A1W2PR77 199 aa9.65□□□□□ -0.86
LDLR-208ENST00000558518 ZIC3O60481 467 aa9.65□□□□□ -0.86
LDLR-208ENST00000558518 CBLN1P23435 193 aa9.65□□□□□ -0.86
LDLR-208ENST00000558518 ATP5G3P48201 142 aa9.65□□□□□ -0.86
LDLR-208ENST00000558518 ERASQ7Z444 233 aa9.65□□□□□ -0.86
LDLR-208ENST00000558518 RAB24Q969Q5 203 aa9.65□□□□□ -0.86
LDLR-208ENST00000558518 BTF3L4Q96K17 158 aa9.65□□□□□ -0.86
LDLR-208ENST00000558518 CCDC74BQ96LY2 380 aa9.65□□□□□ -0.86
LDLR-208ENST00000558518 C2orf88Q9BSF0 95 aa9.65□□□□□ -0.86
LDLR-208ENST00000558518 DECR2Q9NUI1 292 aa9.65□□□□□ -0.86
LDLR-208ENST00000558518 TCF21O43680 179 aa9.64□□□□□ -0.87
LDLR-208ENST00000558518 NAPSAO96009 420 aa9.64□□□□□ -0.87
LDLR-208ENST00000558518 TCL1AP56279 114 aa9.64□□□□□ -0.87
LDLR-208ENST00000558518 NXPH1P58417 271 aa9.64□□□□□ -0.87
LDLR-208ENST00000558518 ATOH7Q8N100 152 aa9.64□□□□□ -0.87
LDLR-208ENST00000558518 RYDENQ9NUL5 291 aaKnown RBP9.64□□□□□ -0.87
LDLR-208ENST00000558518 SEMA5BQ9P283 1151 aa9.64□□□□□ -0.87
LDLR-208ENST00000558518 OR2W1Q9Y3N9 320 aa9.64□□□□□ -0.87
LDLR-208ENST00000558518 FAM166BA8MTA8 275 aa9.64□□□□□ -0.87
LDLR-208ENST00000558518 CA11O75493 328 aa9.64□□□□□ -0.87
LDLR-208ENST00000558518 HRASP01112 189 aa9.64□□□□□ -0.87
LDLR-208ENST00000558518 SLC25A6P12236 298 aa9.64□□□□□ -0.87
LDLR-208ENST00000558518 CCL4P13236 92 aa9.64□□□□□ -0.87
LDLR-208ENST00000558518 KCNMB1Q16558 191 aa9.64□□□□□ -0.87
LDLR-208ENST00000558518 ASPHD1Q5U4P2 390 aa9.64□□□□□ -0.87
LDLR-208ENST00000558518 HAPLN4Q86UW8 402 aa9.64□□□□□ -0.87
LDLR-208ENST00000558518 NOL4LQ96MY1 436 aaPredicted RBP9.64□□□□□ -0.87
LDLR-208ENST00000558518 NAGKQ9UJ70 344 aa9.64□□□□□ -0.87
LDLR-208ENST00000558518 A0A1B0GW64 132 aa9.64□□□□□ -0.87
LDLR-208ENST00000558518 OR6C6A6NF89 314 aa9.64□□□□□ -0.87
LDLR-208ENST00000558518 SLC17A3O00476 420 aa9.64□□□□□ -0.87
LDLR-208ENST00000558518 ZG16O60844 167 aa9.64□□□□□ -0.87
LDLR-208ENST00000558518 VAMP5O95183 116 aa9.64□□□□□ -0.87
LDLR-208ENST00000558518 IL18BPO95998 194 aa9.64□□□□□ -0.87
LDLR-208ENST00000558518 LIFP15018 202 aa9.64□□□□□ -0.87
LDLR-208ENST00000558518 CRYGSP22914 178 aa9.64□□□□□ -0.87
LDLR-208ENST00000558518 PPP1CBP62140 327 aa9.64□□□□□ -0.87
LDLR-208ENST00000558518 OR5R1Q8NH85 324 aa9.64□□□□□ -0.87
LDLR-208ENST00000558518 TP53TG5Q9Y2B4 290 aa9.64□□□□□ -0.87
LDLR-208ENST00000558518 GOLT1BQ9Y3E0 138 aa9.64□□□□□ -0.87
LDLR-208ENST00000558518 RNF115Q9Y4L5 304 aa9.64□□□□□ -0.87
LDLR-208ENST00000558518 ATP23Q9Y6H3 246 aa9.64□□□□□ -0.87
LDLR-208ENST00000558518 TRBV24-1A0A075B6N3 115 aa9.63□□□□□ -0.87
LDLR-208ENST00000558518 RAMP3O60896 148 aa9.63□□□□□ -0.87
LDLR-208ENST00000558518 KBTBD11O94819 623 aa9.63□□□□□ -0.87
LDLR-208ENST00000558518 PMCHP20382 165 aa9.63□□□□□ -0.87
LDLR-208ENST00000558518 MAS1LP35410 378 aa9.63□□□□□ -0.87
LDLR-208ENST00000558518 PCP4P48539 62 aa9.63□□□□□ -0.87
LDLR-208ENST00000558518 ZNF90Q03938 601 aa9.63□□□□□ -0.87
LDLR-208ENST00000558518 DBX2Q6ZNG2 339 aa9.63□□□□□ -0.87
LDLR-208ENST00000558518 SYT13Q7L8C5 426 aa9.63□□□□□ -0.87
LDLR-208ENST00000558518 OR5P3Q8WZ94 311 aa9.63□□□□□ -0.87
LDLR-208ENST00000558518 TMEM54Q969K7 222 aa9.63□□□□□ -0.87
LDLR-208ENST00000558518 HSPB9Q9BQS6 159 aa9.63□□□□□ -0.87
LDLR-208ENST00000558518 WDR61Q9GZS3 305 aaKnown RBP9.63□□□□□ -0.87
LDLR-208ENST00000558518 MANBALQ9NQG1 85 aa9.63□□□□□ -0.87
LDLR-208ENST00000558518 A0A1W2PQM1 296 aa9.63□□□□□ -0.87
LDLR-208ENST00000558518 H0Y980 276 aa9.63□□□□□ -0.87
LDLR-208ENST00000558518 PFN1P07737 140 aaKnown RBP9.63□□□□□ -0.87
LDLR-208ENST00000558518 NTF3P20783 257 aa9.63□□□□□ -0.87
LDLR-208ENST00000558518 DSCR4P56555 118 aaPredicted RBP9.63□□□□□ -0.87
LDLR-208ENST00000558518 C10orf128Q5T292 105 aa9.63□□□□□ -0.87
LDLR-208ENST00000558518 FBXO46Q6PJ61 603 aaPredicted RBP9.63□□□□□ -0.87
LDLR-208ENST00000558518 FGFRL1Q8N441 504 aa9.63□□□□□ -0.87
LDLR-208ENST00000558518 CPT1CQ8TCG5 803 aa9.63□□□□□ -0.87
LDLR-208ENST00000558518 TMEM68Q96MH6 324 aa9.63□□□□□ -0.87
LDLR-208ENST00000558518 MDFIC2A0A1B0GVS7 189 aa9.63□□□□□ -0.87
LDLR-208ENST00000558518 IGKV1-5P01602 117 aa9.63□□□□□ -0.87
LDLR-208ENST00000558518 IRF2P14316 349 aa9.63□□□□□ -0.87
LDLR-208ENST00000558518 IL3RAP26951 378 aa9.63□□□□□ -0.87
LDLR-208ENST00000558518 OR10P1Q8NGE3 313 aa9.63□□□□□ -0.87
LDLR-208ENST00000558518 CMTM2Q8TAZ6 248 aa9.63□□□□□ -0.87
LDLR-208ENST00000558518 SSMEM1Q8WWF3 244 aa9.63□□□□□ -0.87
LDLR-208ENST00000558518 DCHS1Q96JQ0 3298 aa9.62□□□□□ -0.87
LDLR-208ENST00000558518 KITLGP21583 273 aa9.62□□□□□ -0.87
LDLR-208ENST00000558518 CTSSP25774 331 aa9.62□□□□□ -0.87
LDLR-208ENST00000558518 OTX1P32242 354 aaPredicted RBP9.62□□□□□ -0.87
LDLR-208ENST00000558518 RABEPKQ7Z6M1 372 aa9.62□□□□□ -0.87
LDLR-208ENST00000558518 OR2D2Q9H210 308 aa9.62□□□□□ -0.87
LDLR-208ENST00000558518 GPR35Q9HC97 309 aa9.62□□□□□ -0.87
LDLR-208ENST00000558518 GCM1Q9NP62 436 aa9.62□□□□□ -0.87
LDLR-208ENST00000558518 TNCP24821 2201 aa9.62□□□□□ -0.87
LDLR-208ENST00000558518 ANKRD30BLA7E2S9 258 aa9.62□□□□□ -0.87
LDLR-208ENST00000558518 AQP7O14520 342 aa9.62□□□□□ -0.87
LDLR-208ENST00000558518 ACTL6BO94805 426 aa9.62□□□□□ -0.87
LDLR-208ENST00000558518 HPRT1P00492 218 aa9.62□□□□□ -0.87
LDLR-208ENST00000558518 IGKV1-39P01597 117 aa9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms