RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 HKR1P10072 659 aa14.03□□□□□ -0.16
LDLR-206ENST00000557958 APOBEC3AP31941 199 aaPredicted RBP14.03□□□□□ -0.16
LDLR-206ENST00000557958 P2RY1P47900 373 aa14.03□□□□□ -0.16
LDLR-206ENST00000557958 NMSQ5H8A3 153 aa14.03□□□□□ -0.16
LDLR-206ENST00000557958 GPR157Q5UAW9 335 aa14.03□□□□□ -0.16
LDLR-206ENST00000557958 GPHA2Q96T91 129 aa14.03□□□□□ -0.16
LDLR-206ENST00000557958 TRAV38-1A0A0B4J264 116 aa14.02□□□□□ -0.16
LDLR-206ENST00000557958 C15orf65H3BRN8 121 aa14.02□□□□□ -0.16
LDLR-206ENST00000557958 KCNAB3O43448 404 aa14.02□□□□□ -0.16
LDLR-206ENST00000557958 ZNF16P17020 682 aaPredicted RBP14.02□□□□□ -0.16
LDLR-206ENST00000557958 PPP1CCP36873 323 aaKnown RBP14.02□□□□□ -0.16
LDLR-206ENST00000557958 EFNB3Q15768 340 aa14.02□□□□□ -0.16
LDLR-206ENST00000557958 EIF5AL1Q6IS14 154 aaKnown RBP14.02□□□□□ -0.16
LDLR-206ENST00000557958 BAP18Q8IXM2 172 aa14.02□□□□□ -0.16
LDLR-206ENST00000557958 TCTEX1D1Q8N7M0 179 aa14.02□□□□□ -0.16
LDLR-206ENST00000557958 SREK1IP1Q8N9Q2 155 aaPredicted RBP14.02□□□□□ -0.16
LDLR-206ENST00000557958 LSM10Q969L4 123 aaKnown RBP14.02□□□□□ -0.16
LDLR-206ENST00000557958 GNG12Q9UBI6 72 aa14.02□□□□□ -0.16
LDLR-206ENST00000557958 RNF115Q9Y4L5 304 aa14.02□□□□□ -0.16
LDLR-206ENST00000557958 A0A1B0GU03 582 aa14.01□□□□□ -0.17
LDLR-206ENST00000557958 B9A039 149 aa14.01□□□□□ -0.17
LDLR-206ENST00000557958 C19orf84I3L1E1 186 aa14.01□□□□□ -0.17
LDLR-206ENST00000557958 ATG12O94817 140 aa14.01□□□□□ -0.17
LDLR-206ENST00000557958 PXDC1Q5TGL8 231 aa14.01□□□□□ -0.17
LDLR-206ENST00000557958 DMRTC2Q8IXT2 367 aaPredicted RBP14.01□□□□□ -0.17
LDLR-206ENST00000557958 PARP12Q9H0J9 701 aaKnown RBP14.01□□□□□ -0.17
LDLR-206ENST00000557958 TRGV10A0A0A0MS01 117 aa14.01□□□□□ -0.17
LDLR-206ENST00000557958 E7EQL1 145 aa14.01□□□□□ -0.17
LDLR-206ENST00000557958 SIAH2O43255 324 aa14.01□□□□□ -0.17
LDLR-206ENST00000557958 GPR137BO60478 399 aa14.01□□□□□ -0.17
LDLR-206ENST00000557958 AKR1C2P52895 323 aa14.01□□□□□ -0.17
LDLR-206ENST00000557958 TUSC1Q2TAM9 212 aa14.01□□□□□ -0.17
LDLR-206ENST00000557958 FAM219AQ8IW50 185 aa14.01□□□□□ -0.17
LDLR-206ENST00000557958 RFESDQ8TAC1 157 aa14.01□□□□□ -0.17
LDLR-206ENST00000557958 FAM212BQ9NTI7 297 aaPredicted RBP14.01□□□□□ -0.17
LDLR-206ENST00000557958 ZFYVE26Q68DK2 2539 aa14.01□□□□□ -0.17
LDLR-206ENST00000557958 TRIM77I1YAP6 450 aa14□□□□□ -0.17
LDLR-206ENST00000557958 LGALS8O00214 317 aa14□□□□□ -0.17
LDLR-206ENST00000557958 WRBO00258 174 aa14□□□□□ -0.17
LDLR-206ENST00000557958 SIGLEC5O15389 551 aa14□□□□□ -0.17
LDLR-206ENST00000557958 MMP9P14780 707 aa14□□□□□ -0.17
LDLR-206ENST00000557958 TMEM30BQ3MIR4 351 aa14□□□□□ -0.17
LDLR-206ENST00000557958 FAM201AQ5SY85 155 aa14□□□□□ -0.17
LDLR-206ENST00000557958 ZNF66Q6ZN08 573 aa14□□□□□ -0.17
LDLR-206ENST00000557958 ZNF788Q6ZQV5 615 aa14□□□□□ -0.17
LDLR-206ENST00000557958 DEFB108BQ8NET1 73 aa14□□□□□ -0.17
LDLR-206ENST00000557958 GAFA1Q96PS6 74 aa14□□□□□ -0.17
LDLR-206ENST00000557958 RCL1Q9Y2P8 373 aaKnown RBP14□□□□□ -0.17
LDLR-206ENST00000557958 HIVEP3Q5T1R4 2406 aa14□□□□□ -0.17
LDLR-206ENST00000557958 F2RL2O00254 374 aa13.99□□□□□ -0.17
LDLR-206ENST00000557958 YPEL1O60688 119 aa13.99□□□□□ -0.17
LDLR-206ENST00000557958 JTBO76095 146 aa13.99□□□□□ -0.17
LDLR-206ENST00000557958 GAPDHP04406 335 aaKnown RBP13.99□□□□□ -0.17
LDLR-206ENST00000557958 VAMP2P63027 116 aa13.99□□□□□ -0.17
LDLR-206ENST00000557958 YPEL2Q96QA6 119 aa13.99□□□□□ -0.17
LDLR-206ENST00000557958 HSD17B10Q99714 261 aaKnown RBP13.99□□□□□ -0.17
LDLR-206ENST00000557958 CYTL1Q9NRR1 136 aa13.99□□□□□ -0.17
LDLR-206ENST00000557958 CALYQ9NYX4 217 aa13.99□□□□□ -0.17
LDLR-206ENST00000557958 CISD1Q9NZ45 108 aaKnown RBP13.99□□□□□ -0.17
LDLR-206ENST00000557958 GYPAP02724 150 aa13.99□□□□□ -0.17
LDLR-206ENST00000557958 CTRB1P17538 263 aa13.99□□□□□ -0.17
LDLR-206ENST00000557958 CTRB2Q6GPI1 263 aa13.99□□□□□ -0.17
LDLR-206ENST00000557958 RNF150Q9ULK6 438 aa13.99□□□□□ -0.17
LDLR-206ENST00000557958 LAMP3Q9UQV4 416 aa13.99□□□□□ -0.17
LDLR-206ENST00000557958 CFAP46Q8IYW2 2715 aa13.99□□□□□ -0.17
LDLR-206ENST00000557958 IGHV3-43A0A0B4J1X8 118 aa13.98□□□□□ -0.17
LDLR-206ENST00000557958 DEFB108AA8MXU0 73 aa13.98□□□□□ -0.17
LDLR-206ENST00000557958 IGHV3-43DP0DP04 118 aa13.98□□□□□ -0.17
LDLR-206ENST00000557958 RAB7AP51149 207 aa13.98□□□□□ -0.17
LDLR-206ENST00000557958 TMEM33P57088 247 aa13.98□□□□□ -0.17
LDLR-206ENST00000557958 ZCCHC24Q8N2G6 241 aaKnown RBP13.98□□□□□ -0.17
LDLR-206ENST00000557958 CCL13Q99616 98 aa13.98□□□□□ -0.17
LDLR-206ENST00000557958 DCTN5Q9BTE1 182 aa13.98□□□□□ -0.17
LDLR-206ENST00000557958 SLC25A31Q9H0C2 315 aa13.98□□□□□ -0.17
LDLR-206ENST00000557958 PSG11Q9UQ72 335 aa13.98□□□□□ -0.17
LDLR-206ENST00000557958 PLCE1Q9P212 2302 aa13.98□□□□□ -0.17
LDLR-206ENST00000557958 PPIAL4EA0A075B759 164 aa13.97□□□□□ -0.17
LDLR-206ENST00000557958 BORCS7-ASMTA0A0B4J1R7 106 aa13.97□□□□□ -0.17
LDLR-206ENST00000557958 KBTBD11-OT1A0A1B0GTJ5 212 aa13.97□□□□□ -0.17
LDLR-206ENST00000557958 PPIAL4DF5H284 164 aa13.97□□□□□ -0.17
LDLR-206ENST00000557958 TMEM178BH3BS89 294 aa13.97□□□□□ -0.17
LDLR-206ENST00000557958 RNF224P0DH78 156 aa13.97□□□□□ -0.17
LDLR-206ENST00000557958 PPIAL4FP0DN26 164 aa13.97□□□□□ -0.17
LDLR-206ENST00000557958 GPR12P47775 334 aa13.97□□□□□ -0.17
LDLR-206ENST00000557958 ID3Q02535 119 aa13.97□□□□□ -0.17
LDLR-206ENST00000557958 ZNF273Q14593 569 aa13.97□□□□□ -0.17
LDLR-206ENST00000557958 MORN2Q502X0 79 aa13.97□□□□□ -0.17
LDLR-206ENST00000557958 CD300LFQ8TDQ1 290 aa13.97□□□□□ -0.17
LDLR-206ENST00000557958 TCTEX1D2Q8WW35 142 aa13.97□□□□□ -0.17
LDLR-206ENST00000557958 TMEM106BQ9NUM4 274 aa13.97□□□□□ -0.17
LDLR-206ENST00000557958 CLN8Q9UBY8 286 aa13.97□□□□□ -0.17
LDLR-206ENST00000557958 FBXL17Q9UF56 701 aa13.97□□□□□ -0.17
LDLR-206ENST00000557958 PPIAL4AQ9Y536 164 aa13.97□□□□□ -0.17
LDLR-206ENST00000557958 hADV38S2A0JD32 116 aa13.97□□□□□ -0.17
LDLR-206ENST00000557958 ITGB1BP1O14713 200 aa13.97□□□□□ -0.17
LDLR-206ENST00000557958 TMPRSS2O15393 492 aa13.97□□□□□ -0.17
LDLR-206ENST00000557958 SSSCA1O60232 199 aa13.97□□□□□ -0.17
LDLR-206ENST00000557958 CLDN1O95832 211 aa13.97□□□□□ -0.17
LDLR-206ENST00000557958 ATF4P18848 351 aaPredicted RBP13.97□□□□□ -0.17
LDLR-206ENST00000557958 EPHA1P21709 976 aa13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms