RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 GALR1P47211 349 aa13.8□□□□□ -0.2
SHMT2-232ENST00000557487 CYB561P49447 251 aa13.8□□□□□ -0.2
SHMT2-232ENST00000557487 TAS2R60P59551 318 aa13.8□□□□□ -0.2
SHMT2-232ENST00000557487 ZNF585BQ52M93 769 aa13.8□□□□□ -0.2
SHMT2-232ENST00000557487 BEND2Q8NDZ0 799 aa13.8□□□□□ -0.2
SHMT2-232ENST00000557487 TMEM170AQ8WVE7 144 aa13.8□□□□□ -0.2
SHMT2-232ENST00000557487 CRIM1Q9NZV1 1036 aa13.8□□□□□ -0.2
SHMT2-232ENST00000557487 ARGFXA6NJG6 315 aa13.79□□□□□ -0.2
SHMT2-232ENST00000557487 SOX15O60248 233 aa13.79□□□□□ -0.2
SHMT2-232ENST00000557487 SYNGR4O95473 234 aa13.79□□□□□ -0.2
SHMT2-232ENST00000557487 RAB4BP61018 213 aa13.79□□□□□ -0.2
SHMT2-232ENST00000557487 RPL23P62829 140 aaKnown RBP13.79□□□□□ -0.2
SHMT2-232ENST00000557487 SPANXN5Q5MJ07 72 aa13.79□□□□□ -0.2
SHMT2-232ENST00000557487 Q6P435 159 aa13.79□□□□□ -0.2
SHMT2-232ENST00000557487 PPP1R32Q7Z5V6 425 aa13.79□□□□□ -0.2
SHMT2-232ENST00000557487 RHOVQ96L33 236 aa13.79□□□□□ -0.2
SHMT2-232ENST00000557487 SSX3Q99909 188 aa13.79□□□□□ -0.2
SHMT2-232ENST00000557487 OR51I2Q9H344 312 aa13.79□□□□□ -0.2
SHMT2-232ENST00000557487 HSPB7Q9UBY9 170 aa13.79□□□□□ -0.2
SHMT2-232ENST00000557487 RBM7Q9Y580 266 aaKnown RBP13.79□□□□□ -0.2
SHMT2-232ENST00000557487 CACNA1EQ15878 2313 aa13.78□□□□□ -0.2
SHMT2-232ENST00000557487 AMBPP02760 352 aa13.78□□□□□ -0.2
SHMT2-232ENST00000557487 CFIP05156 583 aa13.78□□□□□ -0.2
SHMT2-232ENST00000557487 SERPINA7P05543 415 aa13.78□□□□□ -0.2
SHMT2-232ENST00000557487 COL10A1Q03692 680 aa13.78□□□□□ -0.2
SHMT2-232ENST00000557487 TNFRSF9Q07011 255 aa13.78□□□□□ -0.2
SHMT2-232ENST00000557487 Q3ZCU0 254 aa13.78□□□□□ -0.2
SHMT2-232ENST00000557487 ZNF497Q6ZNH5 498 aa13.78□□□□□ -0.2
SHMT2-232ENST00000557487 RPP25LQ8N5L8 163 aaKnown RBP13.78□□□□□ -0.2
SHMT2-232ENST00000557487 IL1F10Q8WWZ1 152 aa13.78□□□□□ -0.2
SHMT2-232ENST00000557487 MRPL37Q9BZE1 423 aaKnown RBP13.78□□□□□ -0.2
SHMT2-232ENST00000557487 OR1A1Q9P1Q5 309 aa13.78□□□□□ -0.2
SHMT2-232ENST00000557487 GAB2Q9UQC2 676 aa13.78□□□□□ -0.2
SHMT2-232ENST00000557487 LAMP3Q9UQV4 416 aa13.78□□□□□ -0.2
SHMT2-232ENST00000557487 PIEZO1Q92508 2521 aa13.78□□□□□ -0.2
SHMT2-232ENST00000557487 UBE2L5PA0A1B0GUS4 154 aa13.78□□□□□ -0.2
SHMT2-232ENST00000557487 J3QW42 95 aa13.78□□□□□ -0.2
SHMT2-232ENST00000557487 GGCTO75223 188 aaKnown RBP13.78□□□□□ -0.2
SHMT2-232ENST00000557487 GZMBP10144 247 aa13.78□□□□□ -0.2
SHMT2-232ENST00000557487 CCKARP32238 428 aa13.78□□□□□ -0.2
SHMT2-232ENST00000557487 ELLP55199 621 aaPredicted RBP13.78□□□□□ -0.2
SHMT2-232ENST00000557487 LCN2P80188 198 aa13.78□□□□□ -0.2
SHMT2-232ENST00000557487 CISD2Q8N5K1 135 aaKnown RBP13.78□□□□□ -0.2
SHMT2-232ENST00000557487 TCTEX1D1Q8N7M0 179 aa13.78□□□□□ -0.2
SHMT2-232ENST00000557487 PRRG4Q9BZD6 226 aa13.78□□□□□ -0.2
SHMT2-232ENST00000557487 MBNL3Q9NUK0 354 aaKnown RBP13.78□□□□□ -0.2
SHMT2-232ENST00000557487 B4GALT7Q9UBV7 327 aa13.78□□□□□ -0.2
SHMT2-232ENST00000557487 PPP1R3CQ9UQK1 317 aa13.78□□□□□ -0.2
SHMT2-232ENST00000557487 WIPI2Q9Y4P8 454 aa13.78□□□□□ -0.2
SHMT2-232ENST00000557487 FAM186AA6NE01 2351 aa13.77□□□□□ -0.2
SHMT2-232ENST00000557487 XKRY2A2RUG3 117 aa13.77□□□□□ -0.21
SHMT2-232ENST00000557487 CDX4O14627 284 aaPredicted RBP13.77□□□□□ -0.21
SHMT2-232ENST00000557487 GDF9O60383 454 aa13.77□□□□□ -0.21
SHMT2-232ENST00000557487 IGHV3-9P01782 118 aa13.77□□□□□ -0.21
SHMT2-232ENST00000557487 CCL4P13236 92 aa13.77□□□□□ -0.21
SHMT2-232ENST00000557487 CD99P14209 185 aa13.77□□□□□ -0.21
SHMT2-232ENST00000557487 COX5AP20674 150 aa13.77□□□□□ -0.21
SHMT2-232ENST00000557487 IZUMO4Q1ZYL8 232 aa13.77□□□□□ -0.21
SHMT2-232ENST00000557487 KCNIP4Q6PIL6 250 aa13.77□□□□□ -0.21
SHMT2-232ENST00000557487 PNPLA5Q7Z6Z6 429 aaPredicted RBP13.77□□□□□ -0.21
SHMT2-232ENST00000557487 FGFRL1Q8N441 504 aa13.77□□□□□ -0.21
SHMT2-232ENST00000557487 CIB3Q96Q77 187 aaPredicted RBP13.77□□□□□ -0.21
SHMT2-232ENST00000557487 DEPPQ9NTK1 212 aa13.77□□□□□ -0.21
SHMT2-232ENST00000557487 KCNS2Q9ULS6 477 aa13.77□□□□□ -0.21
SHMT2-232ENST00000557487 POLDIP2Q9Y2S7 368 aa13.77□□□□□ -0.21
SHMT2-232ENST00000557487 SDK1Q7Z5N4 2213 aa13.77□□□□□ -0.21
SHMT2-232ENST00000557487 A0A096LPE4 126 aa13.76□□□□□ -0.21
SHMT2-232ENST00000557487 A0A1W2PPZ6 126 aa13.76□□□□□ -0.21
SHMT2-232ENST00000557487 B4E171 279 aa13.76□□□□□ -0.21
SHMT2-232ENST00000557487 CLDN1O95832 211 aa13.76□□□□□ -0.21
SHMT2-232ENST00000557487 TSPAN7P41732 249 aa13.76□□□□□ -0.21
SHMT2-232ENST00000557487 ACTL10Q5JWF8 245 aa13.76□□□□□ -0.21
SHMT2-232ENST00000557487 TMEM18Q96B42 140 aa13.76□□□□□ -0.21
SHMT2-232ENST00000557487 APH1AQ96BI3 265 aa13.76□□□□□ -0.21
SHMT2-232ENST00000557487 MEGF10Q96KG7 1140 aa13.76□□□□□ -0.21
SHMT2-232ENST00000557487 FAM173AQ9BQD7 235 aa13.76□□□□□ -0.21
SHMT2-232ENST00000557487 RTL8AQ9BWD3 113 aa13.76□□□□□ -0.21
SHMT2-232ENST00000557487 PARLQ9H300 379 aa13.76□□□□□ -0.21
SHMT2-232ENST00000557487 TRAPPC2LQ9UL33 140 aa13.76□□□□□ -0.21
SHMT2-232ENST00000557487 TP53TG5Q9Y2B4 290 aa13.76□□□□□ -0.21
SHMT2-232ENST00000557487 USP34Q70CQ2 3546 aa13.76□□□□□ -0.21
SHMT2-232ENST00000557487 A8MWP6 167 aa13.76□□□□□ -0.21
SHMT2-232ENST00000557487 NGFP01138 241 aa13.76□□□□□ -0.21
SHMT2-232ENST00000557487 LHX2P50458 406 aa13.76□□□□□ -0.21
SHMT2-232ENST00000557487 Q0VFX4 171 aa13.76□□□□□ -0.21
SHMT2-232ENST00000557487 SSPNQ14714 243 aa13.76□□□□□ -0.21
SHMT2-232ENST00000557487 TMEM249Q2WGJ8 235 aa13.76□□□□□ -0.21
SHMT2-232ENST00000557487 ZNF66Q6ZN08 573 aa13.76□□□□□ -0.21
SHMT2-232ENST00000557487 DRAM1Q8N682 238 aa13.76□□□□□ -0.21
SHMT2-232ENST00000557487 OR2T10Q8NGZ9 312 aa13.76□□□□□ -0.21
SHMT2-232ENST00000557487 NEIL1Q96FI4 390 aaPredicted RBP13.76□□□□□ -0.21
SHMT2-232ENST00000557487 IMMP2LQ96T52 175 aa13.76□□□□□ -0.21
SHMT2-232ENST00000557487 NDUFAF3Q9BU61 184 aa13.76□□□□□ -0.21
SHMT2-232ENST00000557487 EP300Q09472 2414 aaPredicted RBP13.76□□□□□ -0.21
SHMT2-232ENST00000557487 RIF1Q5UIP0 2472 aaKnown RBP13.75□□□□□ -0.21
SHMT2-232ENST00000557487 C17orf112F2Z3M2 114 aa13.75□□□□□ -0.21
SHMT2-232ENST00000557487 CCL2P13500 99 aa13.75□□□□□ -0.21
SHMT2-232ENST00000557487 ZNF16P17020 682 aaPredicted RBP13.75□□□□□ -0.21
SHMT2-232ENST00000557487 VWC2Q2TAL6 325 aa13.75□□□□□ -0.21
SHMT2-232ENST00000557487 TUSC5Q8IXB3 177 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms