RNA–Protein interactions for RNA: ENST00000556973.1

LINC00239-201, long intergenic non-protein coding RNA 239, humanhuman

TSL 3 BASIC

Gene LINC00239, Length 639 nt, Biotype lincRNA, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00239-201ENST00000556973 KRTAP10-3P60369 221 aa8.52□□□□□ -1.05
LINC00239-201ENST00000556973 SRSF4Q08170 494 aaKnown RBP8.52□□□□□ -1.05
LINC00239-201ENST00000556973 HNF4GQ14541 408 aa8.52□□□□□ -1.05
LINC00239-201ENST00000556973 HERPUD1Q15011 391 aa8.52□□□□□ -1.05
LINC00239-201ENST00000556973 CTF1Q16619 201 aa8.52□□□□□ -1.05
LINC00239-201ENST00000556973 ABCA11PQ4W5N1 156 aa8.52□□□□□ -1.05
LINC00239-201ENST00000556973 FBLN7Q53RD9 439 aa8.52□□□□□ -1.05
LINC00239-201ENST00000556973 IGSF11Q5DX21 431 aa8.52□□□□□ -1.05
LINC00239-201ENST00000556973 ARSJQ5FYB0 599 aaPredicted RBP8.52□□□□□ -1.05
LINC00239-201ENST00000556973 GPR107Q5VW38 600 aa8.52□□□□□ -1.05
LINC00239-201ENST00000556973 Q6ZS46 218 aa8.52□□□□□ -1.05
LINC00239-201ENST00000556973 GPR141Q7Z602 305 aa8.52□□□□□ -1.05
LINC00239-201ENST00000556973 S1PR3Q99500 378 aa8.52□□□□□ -1.05
LINC00239-201ENST00000556973 AGMATQ9BSE5 352 aa8.52□□□□□ -1.05
LINC00239-201ENST00000556973 ST6GALNAC5Q9BVH7 336 aa8.52□□□□□ -1.05
LINC00239-201ENST00000556973 ABCG5Q9H222 651 aa8.52□□□□□ -1.05
LINC00239-201ENST00000556973 IFI27L2Q9H2X8 130 aa8.52□□□□□ -1.05
LINC00239-201ENST00000556973 RDH8Q9NYR8 311 aa8.52□□□□□ -1.05
LINC00239-201ENST00000556973 OR1A1Q9P1Q5 309 aa8.52□□□□□ -1.05
LINC00239-201ENST00000556973 TMEM235A6NFC5 223 aa8.51□□□□□ -1.05
LINC00239-201ENST00000556973 ZNF736B4DX44 427 aaPredicted RBP8.51□□□□□ -1.05
LINC00239-201ENST00000556973 BET1O15155 118 aa8.51□□□□□ -1.05
LINC00239-201ENST00000556973 XRCC3O43542 346 aa8.51□□□□□ -1.05
LINC00239-201ENST00000556973 PEX14O75381 377 aa8.51□□□□□ -1.05
LINC00239-201ENST00000556973 GABARAPO95166 117 aa8.51□□□□□ -1.05
LINC00239-201ENST00000556973 CTXN2P0C2S0 81 aa8.51□□□□□ -1.05
LINC00239-201ENST00000556973 VSIG10L2P0DP72 767 aa8.51□□□□□ -1.05
LINC00239-201ENST00000556973 OR3A3P47888 321 aa8.51□□□□□ -1.05
LINC00239-201ENST00000556973 UBE2NLQ5JXB2 153 aa8.51□□□□□ -1.05
LINC00239-201ENST00000556973 Q8N6K4 173 aa8.51□□□□□ -1.05
LINC00239-201ENST00000556973 C5orf56Q8N8D9 126 aa8.51□□□□□ -1.05
LINC00239-201ENST00000556973 OR8H1Q8NGG4 311 aa8.51□□□□□ -1.05
LINC00239-201ENST00000556973 ACOT12Q8WYK0 555 aa8.51□□□□□ -1.05
LINC00239-201ENST00000556973 MAFIPQ8WZ33 124 aa8.51□□□□□ -1.05
LINC00239-201ENST00000556973 ABHD14BQ96IU4 210 aa8.51□□□□□ -1.05
LINC00239-201ENST00000556973 CMTM3Q96MX0 182 aa8.51□□□□□ -1.05
LINC00239-201ENST00000556973 NABP2Q9BQ15 211 aa8.51□□□□□ -1.05
LINC00239-201ENST00000556973 ZNF251Q9BRH9 671 aa8.51□□□□□ -1.05
LINC00239-201ENST00000556973 CABLES2Q9BTV7 478 aa8.51□□□□□ -1.05
LINC00239-201ENST00000556973 GAB2Q9UQC2 676 aa8.51□□□□□ -1.05
LINC00239-201ENST00000556973 NCBP2LA6PVI3 153 aaKnown RBP8.5□□□□□ -1.05
LINC00239-201ENST00000556973 MC5RP33032 325 aa8.5□□□□□ -1.05
LINC00239-201ENST00000556973 VDAC2P45880 294 aaPredicted RBP8.5□□□□□ -1.05
LINC00239-201ENST00000556973 LSAMPQ13449 338 aa8.5□□□□□ -1.05
LINC00239-201ENST00000556973 CENPVQ7Z7K6 275 aaPredicted RBP8.5□□□□□ -1.05
LINC00239-201ENST00000556973 KLHDC1Q8N7A1 406 aa8.5□□□□□ -1.05
LINC00239-201ENST00000556973 SAMD12Q8N8I0 201 aa8.5□□□□□ -1.05
LINC00239-201ENST00000556973 NUDCD2Q8WVJ2 157 aa8.5□□□□□ -1.05
LINC00239-201ENST00000556973 GINS4Q9BRT9 223 aa8.5□□□□□ -1.05
LINC00239-201ENST00000556973 MRPL20Q9BYC9 149 aaKnown RBP8.5□□□□□ -1.05
LINC00239-201ENST00000556973 WNT10AQ9GZT5 417 aa8.5□□□□□ -1.05
LINC00239-201ENST00000556973 NAA50Q9GZZ1 169 aaKnown RBP8.5□□□□□ -1.05
LINC00239-201ENST00000556973 PARP12Q9H0J9 701 aaKnown RBP8.5□□□□□ -1.05
LINC00239-201ENST00000556973 AUNIPQ9H7T9 357 aa8.5□□□□□ -1.05
LINC00239-201ENST00000556973 ZNF221Q9UK13 617 aa8.5□□□□□ -1.05
LINC00239-201ENST00000556973 RNF150Q9ULK6 438 aa8.5□□□□□ -1.05
LINC00239-201ENST00000556973 DNHD1Q96M86 4753 aa8.5□□□□□ -1.05
LINC00239-201ENST00000556973 TENM1Q9UKZ4 2725 aa8.49□□□□□ -1.05
LINC00239-201ENST00000556973 STAB1Q9NY15 2570 aa8.49□□□□□ -1.05
LINC00239-201ENST00000556973 IGKV1D-8A0A087WSZ0 117 aa8.49□□□□□ -1.05
LINC00239-201ENST00000556973 SSX5O60225 188 aa8.49□□□□□ -1.05
LINC00239-201ENST00000556973 PROP1O75360 226 aa8.49□□□□□ -1.05
LINC00239-201ENST00000556973 CT45A6P0DMU7 189 aa8.49□□□□□ -1.05
LINC00239-201ENST00000556973 CT45A5P0DMU8 189 aa8.49□□□□□ -1.05
LINC00239-201ENST00000556973 CT45A7P0DMV0 189 aa8.49□□□□□ -1.05
LINC00239-201ENST00000556973 ZNF182P17025 639 aaPredicted RBP8.49□□□□□ -1.05
LINC00239-201ENST00000556973 RPL5P46777 297 aaKnown RBP8.49□□□□□ -1.05
LINC00239-201ENST00000556973 GPR12P47775 334 aa8.49□□□□□ -1.05
LINC00239-201ENST00000556973 F2RL1P55085 397 aa8.49□□□□□ -1.05
LINC00239-201ENST00000556973 RPL39P5Q59GN2 51 aa8.49□□□□□ -1.05
LINC00239-201ENST00000556973 C9orf152Q5JTZ5 239 aa8.49□□□□□ -1.05
LINC00239-201ENST00000556973 PRR31Q5SQ13 230 aa8.49□□□□□ -1.05
LINC00239-201ENST00000556973 MZT2AQ6P582 158 aa8.49□□□□□ -1.05
LINC00239-201ENST00000556973 CNIH2Q6PI25 160 aa8.49□□□□□ -1.05
LINC00239-201ENST00000556973 HOGA1Q86XE5 327 aa8.49□□□□□ -1.05
LINC00239-201ENST00000556973 Q8N9W7 124 aa8.49□□□□□ -1.05
LINC00239-201ENST00000556973 ZNF436-AS1Q8NC38 126 aaPredicted RBP8.49□□□□□ -1.05
LINC00239-201ENST00000556973 AP3S1Q92572 193 aa8.49□□□□□ -1.05
LINC00239-201ENST00000556973 RASL11BQ9BPW5 248 aa8.49□□□□□ -1.05
LINC00239-201ENST00000556973 PLSCR3Q9NRY6 295 aa8.49□□□□□ -1.05
LINC00239-201ENST00000556973 LIN7CQ9NUP9 197 aaKnown RBP8.49□□□□□ -1.05
LINC00239-201ENST00000556973 COMMD3Q9UBI1 195 aa8.49□□□□□ -1.05
LINC00239-201ENST00000556973 ANXA10Q9UJ72 324 aa8.49□□□□□ -1.05
LINC00239-201ENST00000556973 SMIM31A0A1B0GVY4 71 aa8.48□□□□□ -1.05
LINC00239-201ENST00000556973 OR5H14A6NHG9 310 aa8.48□□□□□ -1.05
LINC00239-201ENST00000556973 SH2D7A6NKC9 451 aaPredicted RBP8.48□□□□□ -1.05
LINC00239-201ENST00000556973 M0QZ24 198 aa8.48□□□□□ -1.05
LINC00239-201ENST00000556973 APOA1P02647 267 aa8.48□□□□□ -1.05
LINC00239-201ENST00000556973 OR8U9P0C7N5 309 aa8.48□□□□□ -1.05
LINC00239-201ENST00000556973 CBX5P45973 191 aa8.48□□□□□ -1.05
LINC00239-201ENST00000556973 TMBIM6P55061 237 aa8.48□□□□□ -1.05
LINC00239-201ENST00000556973 TMEM69Q5SWH9 247 aa8.48□□□□□ -1.05
LINC00239-201ENST00000556973 CLVS1Q8IUQ0 354 aaPredicted RBP8.48□□□□□ -1.05
LINC00239-201ENST00000556973 H1FOOQ8IZA3 346 aaPredicted RBP8.48□□□□□ -1.05
LINC00239-201ENST00000556973 OR5AN1Q8NGI8 311 aa8.48□□□□□ -1.05
LINC00239-201ENST00000556973 OR8U1Q8NH10 309 aa8.48□□□□□ -1.05
LINC00239-201ENST00000556973 WIPF2Q8TF74 440 aaPredicted RBP8.48□□□□□ -1.05
LINC00239-201ENST00000556973 RNF5Q99942 180 aa8.48□□□□□ -1.05
LINC00239-201ENST00000556973 BCL7BQ9BQE9 202 aa8.48□□□□□ -1.05
LINC00239-201ENST00000556973 RBM7Q9Y580 266 aaKnown RBP8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms