RNA–Protein interactions for RNA: ENST00000556412.4

VIPAS39-208, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,832 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-208ENST00000556412 TINAGL1Q9GZM7 467 aaPredicted RBP11.36□□□□□ -0.59
VIPAS39-208ENST00000556412 TAS2R8Q9NYW2 309 aa11.36□□□□□ -0.59
VIPAS39-208ENST00000556412 ZNF221Q9UK13 617 aa11.36□□□□□ -0.59
VIPAS39-208ENST00000556412 RBMX2Q9Y388 322 aaKnown RBP11.36□□□□□ -0.59
VIPAS39-208ENST00000556412 OR2W1Q9Y3N9 320 aa11.36□□□□□ -0.59
VIPAS39-208ENST00000556412 SAA2-SAA4A0A096LPE2 208 aa11.35□□□□□ -0.59
VIPAS39-208ENST00000556412 PPYP01298 95 aa11.35□□□□□ -0.59
VIPAS39-208ENST00000556412 SAA2P0DJI9 122 aaPredicted RBP11.35□□□□□ -0.59
VIPAS39-208ENST00000556412 LUMP51884 338 aaPredicted RBP11.35□□□□□ -0.59
VIPAS39-208ENST00000556412 HERV-K104P61576 105 aa11.35□□□□□ -0.59
VIPAS39-208ENST00000556412 DYRK1AQ13627 763 aa11.35□□□□□ -0.59
VIPAS39-208ENST00000556412 RPL39P5Q59GN2 51 aa11.35□□□□□ -0.59
VIPAS39-208ENST00000556412 LINC00299Q6ZSB3 139 aa11.35□□□□□ -0.59
VIPAS39-208ENST00000556412 TMEM17Q86X19 198 aa11.35□□□□□ -0.59
VIPAS39-208ENST00000556412 GDPD1Q8N9F7 314 aa11.35□□□□□ -0.59
VIPAS39-208ENST00000556412 OR4D10Q8NGI6 311 aa11.35□□□□□ -0.59
VIPAS39-208ENST00000556412 OR6F1Q8NGZ6 308 aa11.35□□□□□ -0.59
VIPAS39-208ENST00000556412 DUX5Q96PT3 197 aa11.35□□□□□ -0.59
VIPAS39-208ENST00000556412 PIPOXQ9P0Z9 390 aa11.35□□□□□ -0.59
VIPAS39-208ENST00000556412 SONP18583 2426 aaKnown RBP11.35□□□□□ -0.59
VIPAS39-208ENST00000556412 LY6LH3BQJ8 138 aa11.35□□□□□ -0.59
VIPAS39-208ENST00000556412 RAB29O14966 203 aa11.35□□□□□ -0.59
VIPAS39-208ENST00000556412 ARHGDIBP52566 201 aa11.35□□□□□ -0.59
VIPAS39-208ENST00000556412 BAMBIQ13145 260 aa11.35□□□□□ -0.59
VIPAS39-208ENST00000556412 BAK1Q16611 211 aa11.35□□□□□ -0.59
VIPAS39-208ENST00000556412 ZNF57Q68EA5 555 aaPredicted RBP11.35□□□□□ -0.59
VIPAS39-208ENST00000556412 MOB3BQ86TA1 216 aa11.35□□□□□ -0.59
VIPAS39-208ENST00000556412 TGIF2LXQ8IUE1 241 aa11.35□□□□□ -0.59
VIPAS39-208ENST00000556412 TOMM5Q8N4H5 51 aa11.35□□□□□ -0.59
VIPAS39-208ENST00000556412 TRIM63Q969Q1 353 aa11.35□□□□□ -0.59
VIPAS39-208ENST00000556412 AGMATQ9BSE5 352 aa11.35□□□□□ -0.59
VIPAS39-208ENST00000556412 TOLLIPQ9H0E2 274 aa11.35□□□□□ -0.59
VIPAS39-208ENST00000556412 ABCB10Q9NRK6 738 aa11.35□□□□□ -0.59
VIPAS39-208ENST00000556412 DOCK11Q5JSL3 2073 aa11.34□□□□□ -0.59
VIPAS39-208ENST00000556412 IGKV1D-13A0A0B4J2D9 117 aa11.34□□□□□ -0.59
VIPAS39-208ENST00000556412 LINC00854A0A1B0GVQ3 168 aa11.34□□□□□ -0.59
VIPAS39-208ENST00000556412 ANKRD20A5PA0PJZ0 165 aa11.34□□□□□ -0.59
VIPAS39-208ENST00000556412 ITGB1BP1O14713 200 aa11.34□□□□□ -0.59
VIPAS39-208ENST00000556412 HOXA3O43365 443 aaPredicted RBP11.34□□□□□ -0.59
VIPAS39-208ENST00000556412 TUSC2O75896 110 aa11.34□□□□□ -0.59
VIPAS39-208ENST00000556412 GAPDHP04406 335 aaKnown RBP11.34□□□□□ -0.59
VIPAS39-208ENST00000556412 AMY2AP04746 511 aa11.34□□□□□ -0.59
VIPAS39-208ENST00000556412 AKAIN1P0CW23 69 aa11.34□□□□□ -0.59
VIPAS39-208ENST00000556412 IGKV1-13P0DP09 117 aa11.34□□□□□ -0.59
VIPAS39-208ENST00000556412 TBPP20226 339 aa11.34□□□□□ -0.59
VIPAS39-208ENST00000556412 RAB13P51153 203 aa11.34□□□□□ -0.59
VIPAS39-208ENST00000556412 SCGB2B2Q4G0G5 96 aa11.34□□□□□ -0.59
VIPAS39-208ENST00000556412 VAX1Q5SQQ9 334 aa11.34□□□□□ -0.59
VIPAS39-208ENST00000556412 CCDC144NLQ6NUI1 221 aa11.34□□□□□ -0.59
VIPAS39-208ENST00000556412 ODF3L1Q8IXM7 274 aa11.34□□□□□ -0.59
VIPAS39-208ENST00000556412 OR56B4Q8NH76 319 aa11.34□□□□□ -0.59
VIPAS39-208ENST00000556412 SECTM1Q8WVN6 248 aa11.34□□□□□ -0.59
VIPAS39-208ENST00000556412 GIMAP1Q8WWP7 306 aa11.34□□□□□ -0.59
VIPAS39-208ENST00000556412 RTN4IP1Q8WWV3 396 aaPredicted RBP11.34□□□□□ -0.59
VIPAS39-208ENST00000556412 S1PR3Q99500 378 aa11.34□□□□□ -0.59
VIPAS39-208ENST00000556412 SSX3Q99909 188 aa11.34□□□□□ -0.59
VIPAS39-208ENST00000556412 MCUBQ9NWR8 336 aa11.34□□□□□ -0.59
VIPAS39-208ENST00000556412 IGHV3-72A0A0B4J1Y9 119 aa11.33□□□□□ -0.6
VIPAS39-208ENST00000556412 IGHV4-59P01825 116 aa11.33□□□□□ -0.6
VIPAS39-208ENST00000556412 CD24P25063 80 aa11.33□□□□□ -0.6
VIPAS39-208ENST00000556412 AP3S2P59780 193 aa11.33□□□□□ -0.6
VIPAS39-208ENST00000556412 LRRC75BQ2VPJ9 315 aa11.33□□□□□ -0.6
VIPAS39-208ENST00000556412 Q6YL49 198 aa11.33□□□□□ -0.6
VIPAS39-208ENST00000556412 ST6GALNAC6Q969X2 333 aa11.33□□□□□ -0.6
VIPAS39-208ENST00000556412 SDHCQ99643 169 aaPredicted RBP11.33□□□□□ -0.6
VIPAS39-208ENST00000556412 WDR12Q9GZL7 423 aaKnown RBP11.33□□□□□ -0.6
VIPAS39-208ENST00000556412 ZNF107Q9UII5 783 aaPredicted RBP11.33□□□□□ -0.6
VIPAS39-208ENST00000556412 WNK2Q9Y3S1 2297 aa11.33□□□□□ -0.6
VIPAS39-208ENST00000556412 MTORP42345 2549 aa11.33□□□□□ -0.6
VIPAS39-208ENST00000556412 TEP1Q99973 2627 aaKnown RBP11.33□□□□□ -0.6
VIPAS39-208ENST00000556412 IGHV1-3A0A0C4DH29 117 aa11.32□□□□□ -0.6
VIPAS39-208ENST00000556412 BTBD17A6NE02 478 aa11.32□□□□□ -0.6
VIPAS39-208ENST00000556412 OOSP1A8MZH6 123 aa11.32□□□□□ -0.6
VIPAS39-208ENST00000556412 H3BUX3 64 aa11.32□□□□□ -0.6
VIPAS39-208ENST00000556412 M0R1X1 148 aa11.32□□□□□ -0.6
VIPAS39-208ENST00000556412 TIMM23O14925 209 aa11.32□□□□□ -0.6
VIPAS39-208ENST00000556412 CD74P04233 296 aa11.32□□□□□ -0.6
VIPAS39-208ENST00000556412 ZNF846Q147U1 533 aa11.32□□□□□ -0.6
VIPAS39-208ENST00000556412 MEF2DQ14814 521 aa11.32□□□□□ -0.6
VIPAS39-208ENST00000556412 DHRS11Q6UWP2 260 aa11.32□□□□□ -0.6
VIPAS39-208ENST00000556412 LDLRAD3Q86YD5 345 aa11.32□□□□□ -0.6
VIPAS39-208ENST00000556412 DRAM1Q8N682 238 aa11.32□□□□□ -0.6
VIPAS39-208ENST00000556412 DRAXINQ8NBI3 349 aaPredicted RBP11.32□□□□□ -0.6
VIPAS39-208ENST00000556412 OR4C16Q8NGL9 310 aa11.32□□□□□ -0.6
VIPAS39-208ENST00000556412 MRPL20Q9BYC9 149 aaKnown RBP11.32□□□□□ -0.6
VIPAS39-208ENST00000556412 SLC5A7Q9GZV3 580 aa11.32□□□□□ -0.6
VIPAS39-208ENST00000556412 MEGF9Q9H1U4 602 aa11.32□□□□□ -0.6
VIPAS39-208ENST00000556412 FN1P02751 2386 aaKnown RBP11.32□□□□□ -0.6
VIPAS39-208ENST00000556412 A0A1W2PPI3 338 aa11.32□□□□□ -0.6
VIPAS39-208ENST00000556412 DISC1C4P0D8 188 aa11.32□□□□□ -0.6
VIPAS39-208ENST00000556412 IFNA2P01563 188 aa11.32□□□□□ -0.6
VIPAS39-208ENST00000556412 IL7P13232 177 aa11.32□□□□□ -0.6
VIPAS39-208ENST00000556412 BRS3P32247 399 aa11.32□□□□□ -0.6
VIPAS39-208ENST00000556412 ZNF137PP52743 207 aa11.32□□□□□ -0.6
VIPAS39-208ENST00000556412 ZNF816Q0VGE8 651 aaPredicted RBP11.32□□□□□ -0.6
VIPAS39-208ENST00000556412 KLF9Q13886 244 aaPredicted RBP11.32□□□□□ -0.6
VIPAS39-208ENST00000556412 LY6EQ16553 131 aa11.32□□□□□ -0.6
VIPAS39-208ENST00000556412 KIAA2026Q5HYC2 2103 aa11.32□□□□□ -0.6
VIPAS39-208ENST00000556412 ZNF833PQ6ZTB9 187 aa11.32□□□□□ -0.6
VIPAS39-208ENST00000556412 OR8H3Q8N146 312 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms