RNA–Protein interactions for RNA: ENST00000554805.6

SYNE2-213, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 3,481 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-213ENST00000554805 TMEM9BQ9NQ34 198 aa8.07□□□□□ -1.12
SYNE2-213ENST00000554805 TINAGQ9UJW2 476 aa8.07□□□□□ -1.12
SYNE2-213ENST00000554805 J3QT63 122 aa8.06□□□□□ -1.12
SYNE2-213ENST00000554805 CDIPTO14735 213 aa8.06□□□□□ -1.12
SYNE2-213ENST00000554805 IGKV1-5P01602 117 aa8.06□□□□□ -1.12
SYNE2-213ENST00000554805 RAC2P15153 192 aa8.06□□□□□ -1.12
SYNE2-213ENST00000554805 LHX2P50458 406 aa8.06□□□□□ -1.12
SYNE2-213ENST00000554805 PNRC1Q12796 327 aaPredicted RBP8.06□□□□□ -1.12
SYNE2-213ENST00000554805 SRSF7Q16629 238 aaKnown RBP eCLIP8.06□□□□□ -1.12
SYNE2-213ENST00000554805 SPINK9Q5DT21 86 aa8.06□□□□□ -1.12
SYNE2-213ENST00000554805 ALKBH2Q6NS38 261 aa8.06□□□□□ -1.12
SYNE2-213ENST00000554805 MRGPRGQ86SM5 289 aa8.06□□□□□ -1.12
SYNE2-213ENST00000554805 ZNF709Q8N972 641 aa8.06□□□□□ -1.12
SYNE2-213ENST00000554805 RTL8AQ9BWD3 113 aa8.06□□□□□ -1.12
SYNE2-213ENST00000554805 CDH20Q9HBT6 801 aa8.06□□□□□ -1.12
SYNE2-213ENST00000554805 UFSP2Q9NUQ7 469 aa8.06□□□□□ -1.12
SYNE2-213ENST00000554805 LRP5LA4QPB2 252 aa8.06□□□□□ -1.12
SYNE2-213ENST00000554805 OR5H1A6NKK0 313 aa8.06□□□□□ -1.12
SYNE2-213ENST00000554805 H7BYZ3 331 aa8.06□□□□□ -1.12
SYNE2-213ENST00000554805 OR2H2O95918 312 aa8.06□□□□□ -1.12
SYNE2-213ENST00000554805 MT-CO3P00414 261 aa8.06□□□□□ -1.12
SYNE2-213ENST00000554805 IGKV1-39P01597 117 aa8.06□□□□□ -1.12
SYNE2-213ENST00000554805 IGKV1D-39P04432 117 aa8.06□□□□□ -1.12
SYNE2-213ENST00000554805 PLA2G5P39877 138 aa8.06□□□□□ -1.12
SYNE2-213ENST00000554805 CEBPDP49716 269 aaPredicted RBP8.06□□□□□ -1.12
SYNE2-213ENST00000554805 IDH3GP51553 393 aaPredicted RBP8.06□□□□□ -1.12
SYNE2-213ENST00000554805 TMEM41BQ5BJD5 291 aa8.06□□□□□ -1.12
SYNE2-213ENST00000554805 CXorf67Q86X51 503 aaPredicted RBP8.06□□□□□ -1.12
SYNE2-213ENST00000554805 OR4F5Q8NH21 305 aa8.06□□□□□ -1.12
SYNE2-213ENST00000554805 OR4F4Q96R69 305 aa8.06□□□□□ -1.12
SYNE2-213ENST00000554805 STRADBQ9C0K7 418 aa8.06□□□□□ -1.12
SYNE2-213ENST00000554805 TREM2Q9NZC2 230 aa8.06□□□□□ -1.12
SYNE2-213ENST00000554805 DMXL1Q9Y485 3027 aa8.06□□□□□ -1.12
SYNE2-213ENST00000554805 PTBP3O95758 552 aaKnown RBP8.06□□□□□ -1.12
SYNE2-213ENST00000554805 SELEP16581 610 aa8.06□□□□□ -1.12
SYNE2-213ENST00000554805 WNT5AP41221 380 aa8.06□□□□□ -1.12
SYNE2-213ENST00000554805 PSMB3P49720 205 aa8.06□□□□□ -1.12
SYNE2-213ENST00000554805 CLDN18P56856 261 aa8.06□□□□□ -1.12
SYNE2-213ENST00000554805 ERVS71-1P61550 626 aa8.06□□□□□ -1.12
SYNE2-213ENST00000554805 ZNF726P1Q15940 193 aa8.06□□□□□ -1.12
SYNE2-213ENST00000554805 SSX7Q7RTT5 188 aa8.06□□□□□ -1.12
SYNE2-213ENST00000554805 MDP1Q86V88 176 aa8.06□□□□□ -1.12
SYNE2-213ENST00000554805 FGFRL1Q8N441 504 aa8.06□□□□□ -1.12
SYNE2-213ENST00000554805 TMEM251Q8N6I4 163 aa8.06□□□□□ -1.12
SYNE2-213ENST00000554805 NANOS1Q8WY41 292 aaKnown RBP8.06□□□□□ -1.12
SYNE2-213ENST00000554805 NINJ1Q92982 152 aa8.06□□□□□ -1.12
SYNE2-213ENST00000554805 PINX1Q96BK5 328 aaKnown RBP8.06□□□□□ -1.12
SYNE2-213ENST00000554805 TTTY12Q9BZ98 90 aa8.06□□□□□ -1.12
SYNE2-213ENST00000554805 ZNF703Q9H7S9 590 aaPredicted RBP8.06□□□□□ -1.12
SYNE2-213ENST00000554805 SDF2L1Q9HCN8 221 aa8.06□□□□□ -1.12
SYNE2-213ENST00000554805 SPTAN1Q13813 2472 aaKnown RBP8.05□□□□□ -1.12
SYNE2-213ENST00000554805 IGKV3D-15A0A087WSY6 115 aa8.05□□□□□ -1.12
SYNE2-213ENST00000554805 COX5BP10606 129 aa8.05□□□□□ -1.12
SYNE2-213ENST00000554805 G6PCP35575 357 aa8.05□□□□□ -1.12
SYNE2-213ENST00000554805 OR3A1P47881 315 aa8.05□□□□□ -1.12
SYNE2-213ENST00000554805 GAMTQ14353 236 aa8.05□□□□□ -1.12
SYNE2-213ENST00000554805 MSMO1Q15800 293 aa8.05□□□□□ -1.12
SYNE2-213ENST00000554805 LTC4SQ16873 150 aa8.05□□□□□ -1.12
SYNE2-213ENST00000554805 TMEM241Q24JQ0 296 aa8.05□□□□□ -1.12
SYNE2-213ENST00000554805 LRRC75BQ2VPJ9 315 aa8.05□□□□□ -1.12
SYNE2-213ENST00000554805 NRN1LQ496H8 165 aa8.05□□□□□ -1.12
SYNE2-213ENST00000554805 DRAM1Q8N682 238 aa8.05□□□□□ -1.12
SYNE2-213ENST00000554805 ABHD5Q8WTS1 349 aa8.05□□□□□ -1.12
SYNE2-213ENST00000554805 CA5BP1Q8WTZ4 195 aa8.05□□□□□ -1.12
SYNE2-213ENST00000554805 TAF15Q92804 592 aaKnown RBP eCLIP8.05□□□□□ -1.12
SYNE2-213ENST00000554805 LSM10Q969L4 123 aaKnown RBP8.05□□□□□ -1.12
SYNE2-213ENST00000554805 OPA3Q9H6K4 179 aa8.05□□□□□ -1.12
SYNE2-213ENST00000554805 CLN8Q9UBY8 286 aa8.05□□□□□ -1.12
SYNE2-213ENST00000554805 CEP295Q9C0D2 2601 aa8.05□□□□□ -1.12
SYNE2-213ENST00000554805 PCNX2A6NKB5 2137 aa8.05□□□□□ -1.12
SYNE2-213ENST00000554805 ELOA3CA0A087WX78 387 aaPredicted RBP8.05□□□□□ -1.12
SYNE2-213ENST00000554805 TRAV1-1A0A0B4J248 108 aa8.05□□□□□ -1.12
SYNE2-213ENST00000554805 ZNF729A6NN14 1252 aaPredicted RBP8.05□□□□□ -1.12
SYNE2-213ENST00000554805 M0R296 226 aa8.05□□□□□ -1.12
SYNE2-213ENST00000554805 SH2D1BO14796 132 aa8.05□□□□□ -1.12
SYNE2-213ENST00000554805 OPN1MWP04001 364 aa8.05□□□□□ -1.12
SYNE2-213ENST00000554805 CD55P08174 381 aa8.05□□□□□ -1.12
SYNE2-213ENST00000554805 OPN1MW2P0DN77 364 aa8.05□□□□□ -1.12
SYNE2-213ENST00000554805 OPN1MW3P0DN78 364 aa8.05□□□□□ -1.12
SYNE2-213ENST00000554805 BMP5P22003 454 aa8.05□□□□□ -1.12
SYNE2-213ENST00000554805 UBE2NP61088 152 aaKnown RBP8.05□□□□□ -1.12
SYNE2-213ENST00000554805 SERF2P84101 59 aa8.05□□□□□ -1.12
SYNE2-213ENST00000554805 C16orf82Q7Z2V1 217 aa8.05□□□□□ -1.12
SYNE2-213ENST00000554805 LINC00596Q86U02 117 aa8.05□□□□□ -1.12
SYNE2-213ENST00000554805 HAPLN4Q86UW8 402 aa8.05□□□□□ -1.12
SYNE2-213ENST00000554805 HIST3H2BBQ8N257 126 aa8.05□□□□□ -1.12
SYNE2-213ENST00000554805 PACRGQ96M98 296 aaPredicted RBP8.05□□□□□ -1.12
SYNE2-213ENST00000554805 WDR61Q9GZS3 305 aaKnown RBP8.05□□□□□ -1.12
SYNE2-213ENST00000554805 OBP2BQ9NPH6 170 aa8.05□□□□□ -1.12
SYNE2-213ENST00000554805 CADP27708 2225 aa8.05□□□□□ -1.12
SYNE2-213ENST00000554805 A0A1W2PPQ1 181 aa8.05□□□□□ -1.12
SYNE2-213ENST00000554805 RNF212BA8MTL3 300 aa8.05□□□□□ -1.12
SYNE2-213ENST00000554805 ZNF705GA8MUZ8 300 aaPredicted RBP8.05□□□□□ -1.12
SYNE2-213ENST00000554805 B4E171 279 aa8.05□□□□□ -1.12
SYNE2-213ENST00000554805 PHOX2AO14813 284 aa8.05□□□□□ -1.12
SYNE2-213ENST00000554805 NDUFS6O75380 124 aaKnown RBP8.05□□□□□ -1.12
SYNE2-213ENST00000554805 NEURL1O76050 574 aa8.05□□□□□ -1.12
SYNE2-213ENST00000554805 FGF7P21781 194 aa8.05□□□□□ -1.12
SYNE2-213ENST00000554805 TSPAN7P41732 249 aa8.05□□□□□ -1.12
SYNE2-213ENST00000554805 BSXQ3C1V8 233 aa8.05□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms