RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 C9orf139Q6ZV77 190 aa7.79□□□□□ -1.16
LIMA1-211ENST00000552338 SLC38A6Q8IZM9 456 aa7.79□□□□□ -1.16
LIMA1-211ENST00000552338 TEX29Q8N6K0 151 aa7.79□□□□□ -1.16
LIMA1-211ENST00000552338 ZNF645Q8N7E2 425 aa7.79□□□□□ -1.16
LIMA1-211ENST00000552338 OR2AK2Q8NG84 335 aa7.79□□□□□ -1.16
LIMA1-211ENST00000552338 OR4P4Q8NGL7 312 aa7.79□□□□□ -1.16
LIMA1-211ENST00000552338 ZFAND1Q8TCF1 268 aa7.79□□□□□ -1.16
LIMA1-211ENST00000552338 CHPT1Q8WUD6 406 aa7.79□□□□□ -1.16
LIMA1-211ENST00000552338 FAHD2AQ96GK7 314 aa7.79□□□□□ -1.16
LIMA1-211ENST00000552338 RTBDNQ9BSG5 229 aaPredicted RBP7.79□□□□□ -1.16
LIMA1-211ENST00000552338 ABHD14AQ9BUJ0 271 aa7.79□□□□□ -1.16
LIMA1-211ENST00000552338 PARP12Q9H0J9 701 aaKnown RBP7.79□□□□□ -1.16
LIMA1-211ENST00000552338 FXYD6Q9H0Q3 95 aa7.79□□□□□ -1.16
LIMA1-211ENST00000552338 MMP28Q9H239 520 aa7.79□□□□□ -1.16
LIMA1-211ENST00000552338 DPAGT1Q9H3H5 408 aa7.79□□□□□ -1.16
LIMA1-211ENST00000552338 C7orf69Q9H7B7 122 aa7.79□□□□□ -1.16
LIMA1-211ENST00000552338 LPAR2Q9HBW0 351 aa7.79□□□□□ -1.16
LIMA1-211ENST00000552338 ONECUT1Q9UBC0 465 aa7.79□□□□□ -1.16
LIMA1-211ENST00000552338 TBL2Q9Y4P3 447 aaKnown RBP7.79□□□□□ -1.16
LIMA1-211ENST00000552338 NUBP2Q9Y5Y2 271 aa7.79□□□□□ -1.16
LIMA1-211ENST00000552338 CSPG4Q6UVK1 2322 aa7.79□□□□□ -1.16
LIMA1-211ENST00000552338 AKAP9Q99996 3911 aa7.79□□□□□ -1.16
LIMA1-211ENST00000552338 IGHV3-43A0A0B4J1X8 118 aa7.78□□□□□ -1.16
LIMA1-211ENST00000552338 FAM240BA0A1B0GVZ2 78 aa7.78□□□□□ -1.16
LIMA1-211ENST00000552338 MEX3AA1L020 520 aaKnown RBP7.78□□□□□ -1.16
LIMA1-211ENST00000552338 BUB1B-PAK6H3BSN5 160 aa7.78□□□□□ -1.16
LIMA1-211ENST00000552338 GPR31O00270 319 aa7.78□□□□□ -1.16
LIMA1-211ENST00000552338 SLC31A2O15432 143 aa7.78□□□□□ -1.16
LIMA1-211ENST00000552338 B3GALNT1O75752 331 aa7.78□□□□□ -1.16
LIMA1-211ENST00000552338 AVPP01185 164 aa7.78□□□□□ -1.16
LIMA1-211ENST00000552338 IGHV3-43DP0DP04 118 aa7.78□□□□□ -1.16
LIMA1-211ENST00000552338 NFYBP25208 207 aa7.78□□□□□ -1.16
LIMA1-211ENST00000552338 ZNF816Q0VGE8 651 aaPredicted RBP7.78□□□□□ -1.16
LIMA1-211ENST00000552338 HABP2Q14520 560 aaPredicted RBP7.78□□□□□ -1.16
LIMA1-211ENST00000552338 RGS21Q2M5E4 152 aa7.78□□□□□ -1.16
LIMA1-211ENST00000552338 ZNF66Q6ZN08 573 aa7.78□□□□□ -1.16
LIMA1-211ENST00000552338 ZNF833PQ6ZTB9 187 aa7.78□□□□□ -1.16
LIMA1-211ENST00000552338 KCTD9Q7L273 389 aa7.78□□□□□ -1.16
LIMA1-211ENST00000552338 NRARPQ7Z6K4 114 aa7.78□□□□□ -1.16
LIMA1-211ENST00000552338 TCTEX1D1Q8N7M0 179 aa7.78□□□□□ -1.16
LIMA1-211ENST00000552338 UBALD1Q8TB05 177 aa7.78□□□□□ -1.16
LIMA1-211ENST00000552338 GALNT14Q96FL9 552 aa7.78□□□□□ -1.16
LIMA1-211ENST00000552338 AJUBAQ96IF1 538 aa7.78□□□□□ -1.16
LIMA1-211ENST00000552338 MEGF9Q9H1U4 602 aa7.78□□□□□ -1.16
LIMA1-211ENST00000552338 PRDM13Q9H4Q3 707 aa7.78□□□□□ -1.16
LIMA1-211ENST00000552338 C5orf66Q9H5L9 145 aa7.78□□□□□ -1.16
LIMA1-211ENST00000552338 SIRT7Q9NRC8 400 aa7.78□□□□□ -1.16
LIMA1-211ENST00000552338 MCUBQ9NWR8 336 aa7.78□□□□□ -1.16
LIMA1-211ENST00000552338 FAM172BPA6NC97 362 aa7.77□□□□□ -1.17
LIMA1-211ENST00000552338 TXNL1O43396 289 aa7.77□□□□□ -1.17
LIMA1-211ENST00000552338 OR8U9P0C7N5 309 aa7.77□□□□□ -1.17
LIMA1-211ENST00000552338 CCR6P51684 374 aa7.77□□□□□ -1.17
LIMA1-211ENST00000552338 HERV-K104P61576 105 aa7.77□□□□□ -1.17
LIMA1-211ENST00000552338 TAGLNQ01995 201 aaKnown RBP7.77□□□□□ -1.17
LIMA1-211ENST00000552338 SCGB2B2Q4G0G5 96 aa7.77□□□□□ -1.17
LIMA1-211ENST00000552338 TMEM128Q5BJH2 165 aa7.77□□□□□ -1.17
LIMA1-211ENST00000552338 KLF17Q5JT82 389 aaPredicted RBP7.77□□□□□ -1.17
LIMA1-211ENST00000552338 ZNF818PQ6ZRF7 136 aa7.77□□□□□ -1.17
LIMA1-211ENST00000552338 SLC25A42Q86VD7 318 aa7.77□□□□□ -1.17
LIMA1-211ENST00000552338 CADM3Q8N126 398 aa7.77□□□□□ -1.17
LIMA1-211ENST00000552338 PNKDQ8N490 385 aa7.77□□□□□ -1.17
LIMA1-211ENST00000552338 DRAM1Q8N682 238 aa7.77□□□□□ -1.17
LIMA1-211ENST00000552338 MAPK1IP1LQ8NDC0 245 aa7.77□□□□□ -1.17
LIMA1-211ENST00000552338 OR8U1Q8NH10 309 aa7.77□□□□□ -1.17
LIMA1-211ENST00000552338 MARCH1Q8TCQ1 289 aa7.77□□□□□ -1.17
LIMA1-211ENST00000552338 DDB2Q92466 427 aa7.77□□□□□ -1.17
LIMA1-211ENST00000552338 MALSU1Q96EH3 234 aa7.77□□□□□ -1.17
LIMA1-211ENST00000552338 HSD17B10Q99714 261 aaKnown RBP7.77□□□□□ -1.17
LIMA1-211ENST00000552338 PCGF1Q9BSM1 259 aa7.77□□□□□ -1.17
LIMA1-211ENST00000552338 SUCNR1Q9BXA5 334 aa7.77□□□□□ -1.17
LIMA1-211ENST00000552338 CCL28Q9NRJ3 127 aa7.77□□□□□ -1.17
LIMA1-211ENST00000552338 SDHAF2Q9NX18 166 aa7.77□□□□□ -1.17
LIMA1-211ENST00000552338 DPM3Q9P2X0 92 aa7.77□□□□□ -1.17
LIMA1-211ENST00000552338 ZNF221Q9UK13 617 aa7.77□□□□□ -1.17
LIMA1-211ENST00000552338 ITGB1BP2Q9UKP3 347 aa7.77□□□□□ -1.17
LIMA1-211ENST00000552338 VSIG4Q9Y279 399 aa7.77□□□□□ -1.17
LIMA1-211ENST00000552338 AMMECR1Q9Y4X0 333 aaPredicted RBP7.77□□□□□ -1.17
LIMA1-211ENST00000552338 NOTCH2Q04721 2471 aa7.77□□□□□ -1.17
LIMA1-211ENST00000552338 FLNBO75369 2602 aaKnown RBP7.77□□□□□ -1.17
LIMA1-211ENST00000552338 IGHV1-69DA0A0B4J2H0 117 aa7.76□□□□□ -1.17
LIMA1-211ENST00000552338 FAM90A9PA6NNJ1 464 aa7.76□□□□□ -1.17
LIMA1-211ENST00000552338 LEUTXA8MZ59 168 aa7.76□□□□□ -1.17
LIMA1-211ENST00000552338 TOR1AO14656 332 aa7.76□□□□□ -1.17
LIMA1-211ENST00000552338 ST8SIA5O15466 376 aa7.76□□□□□ -1.17
LIMA1-211ENST00000552338 PGLYRP1O75594 196 aaPredicted RBP7.76□□□□□ -1.17
LIMA1-211ENST00000552338 IGHV1-69P01742 117 aa7.76□□□□□ -1.17
LIMA1-211ENST00000552338 IL5P05113 134 aa7.76□□□□□ -1.17
LIMA1-211ENST00000552338 IL3RAP26951 378 aa7.76□□□□□ -1.17
LIMA1-211ENST00000552338 HTR1DP28221 377 aa7.76□□□□□ -1.17
LIMA1-211ENST00000552338 DUTP33316 252 aaKnown RBP7.76□□□□□ -1.17
LIMA1-211ENST00000552338 CEACAM3P40198 252 aa7.76□□□□□ -1.17
LIMA1-211ENST00000552338 DYNLT3P51808 116 aa7.76□□□□□ -1.17
LIMA1-211ENST00000552338 AANATQ16613 207 aa7.76□□□□□ -1.17
LIMA1-211ENST00000552338 LTC4SQ16873 150 aa7.76□□□□□ -1.17
LIMA1-211ENST00000552338 LDLRAD2Q5SZI1 272 aa7.76□□□□□ -1.17
LIMA1-211ENST00000552338 PLET1Q6UQ28 207 aa7.76□□□□□ -1.17
LIMA1-211ENST00000552338 CCBE1Q6UXH8 406 aaPredicted RBP7.76□□□□□ -1.17
LIMA1-211ENST00000552338 CMTM1Q8IZ96 169 aa7.76□□□□□ -1.17
LIMA1-211ENST00000552338 OR8H3Q8N146 312 aa7.76□□□□□ -1.17
LIMA1-211ENST00000552338 OR5AN1Q8NGI8 311 aa7.76□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms