RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 SC5DO75845 299 aa12.9□□□□□ -0.34
VPS29-204ENST00000548259 CNIH1O95406 144 aa12.9□□□□□ -0.34
VPS29-204ENST00000548259 EGR2P11161 476 aaPredicted RBP12.9□□□□□ -0.34
VPS29-204ENST00000548259 AADACP22760 399 aa12.9□□□□□ -0.34
VPS29-204ENST00000548259 SYNJ2BPP57105 145 aa12.9□□□□□ -0.34
VPS29-204ENST00000548259 RNLSQ5VYX0 342 aa12.9□□□□□ -0.34
VPS29-204ENST00000548259 RPL22L1Q6P5R6 122 aaKnown RBP12.9□□□□□ -0.34
VPS29-204ENST00000548259 POC5Q8NA72 575 aa12.9□□□□□ -0.34
VPS29-204ENST00000548259 DDB2Q92466 427 aa12.9□□□□□ -0.34
VPS29-204ENST00000548259 TSNAXQ99598 290 aaKnown RBP12.9□□□□□ -0.34
VPS29-204ENST00000548259 FAM103A1Q9BTL3 118 aaKnown RBP12.9□□□□□ -0.34
VPS29-204ENST00000548259 RETNQ9HD89 108 aa12.9□□□□□ -0.34
VPS29-204ENST00000548259 SLC2A8Q9NY64 477 aa12.9□□□□□ -0.34
VPS29-204ENST00000548259 METTL1Q9UBP6 276 aaKnown RBP12.9□□□□□ -0.34
VPS29-204ENST00000548259 UBE2QL1A1L167 161 aa12.89□□□□□ -0.35
VPS29-204ENST00000548259 ANKRD34BA5PLL1 514 aa12.89□□□□□ -0.35
VPS29-204ENST00000548259 RBMY1BA6NDE4 496 aaKnown RBP12.89□□□□□ -0.35
VPS29-204ENST00000548259 RBMY1EA6NEQ0 496 aaKnown RBP12.89□□□□□ -0.35
VPS29-204ENST00000548259 FCN1O00602 326 aa12.89□□□□□ -0.35
VPS29-204ENST00000548259 GPX5O75715 221 aa12.89□□□□□ -0.35
VPS29-204ENST00000548259 RBMY1DP0C7P1 496 aaKnown RBP12.89□□□□□ -0.35
VPS29-204ENST00000548259 GLIPR1L1Q6UWM5 242 aa12.89□□□□□ -0.35
VPS29-204ENST00000548259 LAX1Q8IWV1 398 aa12.89□□□□□ -0.35
VPS29-204ENST00000548259 JAGN1Q8N5M9 183 aa12.89□□□□□ -0.35
VPS29-204ENST00000548259 LINC00476Q8WZB0 136 aa12.89□□□□□ -0.35
VPS29-204ENST00000548259 RGP1Q92546 391 aaPredicted RBP12.89□□□□□ -0.35
VPS29-204ENST00000548259 GHSRQ92847 366 aa12.89□□□□□ -0.35
VPS29-204ENST00000548259 CLCC1Q96S66 551 aa12.89□□□□□ -0.35
VPS29-204ENST00000548259 FAM110AQ9BQ89 295 aa12.89□□□□□ -0.35
VPS29-204ENST00000548259 SELENOIQ9C0D9 397 aa12.89□□□□□ -0.35
VPS29-204ENST00000548259 PEMTQ9UBM1 199 aa12.89□□□□□ -0.35
VPS29-204ENST00000548259 SAC3D1A6NKF1 404 aa12.88□□□□□ -0.35
VPS29-204ENST00000548259 SPDEFO95238 335 aa12.88□□□□□ -0.35
VPS29-204ENST00000548259 LY6G6CO95867 125 aa12.88□□□□□ -0.35
VPS29-204ENST00000548259 CA2P00918 260 aa12.88□□□□□ -0.35
VPS29-204ENST00000548259 GTF2A1P52655 376 aaPredicted RBP12.88□□□□□ -0.35
VPS29-204ENST00000548259 CD81P60033 236 aa12.88□□□□□ -0.35
VPS29-204ENST00000548259 AWAT2Q6E213 333 aa12.88□□□□□ -0.35
VPS29-204ENST00000548259 TMPRSS11AQ6ZMR5 421 aa12.88□□□□□ -0.35
VPS29-204ENST00000548259 GRPEL2Q8TAA5 225 aa12.88□□□□□ -0.35
VPS29-204ENST00000548259 TNCP24821 2201 aa12.88□□□□□ -0.35
VPS29-204ENST00000548259 A0A0B4J203 849 aa12.87□□□□□ -0.35
VPS29-204ENST00000548259 AIREO43918 545 aa12.87□□□□□ -0.35
VPS29-204ENST00000548259 PDCD6O75340 191 aa12.87□□□□□ -0.35
VPS29-204ENST00000548259 CRTAPO75718 401 aaPredicted RBP12.87□□□□□ -0.35
VPS29-204ENST00000548259 RPEL1Q2QD12 228 aa12.87□□□□□ -0.35
VPS29-204ENST00000548259 C1orf146Q5VVC0 180 aa12.87□□□□□ -0.35
VPS29-204ENST00000548259 DMKNQ6E0U4 476 aaPredicted RBP12.87□□□□□ -0.35
VPS29-204ENST00000548259 IL1F10Q8WWZ1 152 aa12.87□□□□□ -0.35
VPS29-204ENST00000548259 MUL1Q969V5 352 aa12.87□□□□□ -0.35
VPS29-204ENST00000548259 TMEM68Q96MH6 324 aa12.87□□□□□ -0.35
VPS29-204ENST00000548259 THAP7Q9BT49 309 aaPredicted RBP12.87□□□□□ -0.35
VPS29-204ENST00000548259 IFI27L2Q9H2X8 130 aa12.87□□□□□ -0.35
VPS29-204ENST00000548259 PLEKHA3Q9HB20 300 aa12.87□□□□□ -0.35
VPS29-204ENST00000548259 PEF1Q9UBV8 284 aaKnown RBP12.87□□□□□ -0.35
VPS29-204ENST00000548259 SLC23A1Q9UHI7 598 aa12.87□□□□□ -0.35
VPS29-204ENST00000548259 GAB2Q9UQC2 676 aa12.87□□□□□ -0.35
VPS29-204ENST00000548259 RPL36Q9Y3U8 105 aaKnown RBP12.87□□□□□ -0.35
VPS29-204ENST00000548259 HYDINQ4G0P3 5121 aa12.86□□□□□ -0.35
VPS29-204ENST00000548259 H0YJW9 148 aa12.86□□□□□ -0.35
VPS29-204ENST00000548259 OR2A4O95047 310 aa12.86□□□□□ -0.35
VPS29-204ENST00000548259 CT45A6P0DMU7 189 aa12.86□□□□□ -0.35
VPS29-204ENST00000548259 CT45A5P0DMU8 189 aa12.86□□□□□ -0.35
VPS29-204ENST00000548259 CT45A7P0DMV0 189 aa12.86□□□□□ -0.35
VPS29-204ENST00000548259 MGMTP16455 207 aa12.86□□□□□ -0.35
VPS29-204ENST00000548259 CPEP16870 476 aa12.86□□□□□ -0.35
VPS29-204ENST00000548259 LGALS7P47929 136 aa12.86□□□□□ -0.35
VPS29-204ENST00000548259 FXYD3Q14802 87 aa12.86□□□□□ -0.35
VPS29-204ENST00000548259 PSG5Q15238 335 aa12.86□□□□□ -0.35
VPS29-204ENST00000548259 IL34Q6ZMJ4 242 aa12.86□□□□□ -0.35
VPS29-204ENST00000548259 CDH26Q8IXH8 852 aa12.86□□□□□ -0.35
VPS29-204ENST00000548259 OR5AN1Q8NGI8 311 aa12.86□□□□□ -0.35
VPS29-204ENST00000548259 SLC7A6OSQ96CW6 309 aaPredicted RBP12.86□□□□□ -0.35
VPS29-204ENST00000548259 USMG5Q96IX5 58 aa12.86□□□□□ -0.35
VPS29-204ENST00000548259 NEURL2Q9BR09 285 aa12.86□□□□□ -0.35
VPS29-204ENST00000548259 BANF2Q9H503 90 aa12.86□□□□□ -0.35
VPS29-204ENST00000548259 ST8SIA5O15466 376 aa12.85□□□□□ -0.35
VPS29-204ENST00000548259 ALPLP05186 524 aa12.85□□□□□ -0.35
VPS29-204ENST00000548259 CSN3P07498 182 aa12.85□□□□□ -0.35
VPS29-204ENST00000548259 IGFBP3P17936 291 aaPredicted RBP12.85□□□□□ -0.35
VPS29-204ENST00000548259 CAPGP40121 348 aa12.85□□□□□ -0.35
VPS29-204ENST00000548259 RPS16P62249 146 aaKnown RBP12.85□□□□□ -0.35
VPS29-204ENST00000548259 ZIK1Q3SY52 487 aaPredicted RBP12.85□□□□□ -0.35
VPS29-204ENST00000548259 LINC00322Q6ZN03 302 aaPredicted RBP12.85□□□□□ -0.35
VPS29-204ENST00000548259 OR5T1Q8NG75 326 aa12.85□□□□□ -0.35
VPS29-204ENST00000548259 OR52I1Q8NGK6 324 aa12.85□□□□□ -0.35
VPS29-204ENST00000548259 MRPL30Q8TCC3 161 aaKnown RBP12.85□□□□□ -0.35
VPS29-204ENST00000548259 EDARADDQ8WWZ3 215 aa12.85□□□□□ -0.35
VPS29-204ENST00000548259 SNAPC3Q92966 411 aa12.85□□□□□ -0.35
VPS29-204ENST00000548259 NEDD4LQ96PU5 975 aa12.85□□□□□ -0.35
VPS29-204ENST00000548259 AMBNQ9NP70 447 aa12.85□□□□□ -0.35
VPS29-204ENST00000548259 APOA2P02652 100 aa12.84□□□□□ -0.35
VPS29-204ENST00000548259 HMGN3Q15651 99 aa12.84□□□□□ -0.35
VPS29-204ENST00000548259 Q499Y3 187 aa12.84□□□□□ -0.35
VPS29-204ENST00000548259 RPL39P5Q59GN2 51 aa12.84□□□□□ -0.35
VPS29-204ENST00000548259 GLDNQ6ZMI3 551 aaPredicted RBP12.84□□□□□ -0.35
VPS29-204ENST00000548259 SMIM19Q96E16 107 aa12.84□□□□□ -0.35
VPS29-204ENST00000548259 Q96M66 194 aa12.84□□□□□ -0.35
VPS29-204ENST00000548259 GHRLQ9UBU3 117 aa12.84□□□□□ -0.35
VPS29-204ENST00000548259 CXorf65A6NEN9 183 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms