RNA–Protein interactions for RNA: ENST00000546378.1

HOXC11-202, Transcript of homeobox C11, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC11, Length 3,261 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11-202ENST00000546378 ATP23Q9Y6H3 246 aa12.48□□□□□ -0.41
HOXC11-202ENST00000546378 CDX4O14627 284 aaPredicted RBP12.47□□□□□ -0.41
HOXC11-202ENST00000546378 LIFP15018 202 aa12.47□□□□□ -0.41
HOXC11-202ENST00000546378 MDH2P40926 338 aaKnown RBP12.47□□□□□ -0.41
HOXC11-202ENST00000546378 DCTN5Q9BTE1 182 aa12.47□□□□□ -0.41
HOXC11-202ENST00000546378 TMEM9BQ9NQ34 198 aa12.47□□□□□ -0.41
HOXC11-202ENST00000546378 SYNGR3O43761 229 aa12.47□□□□□ -0.41
HOXC11-202ENST00000546378 IL11RAQ14626 422 aa12.47□□□□□ -0.41
HOXC11-202ENST00000546378 EXT1Q16394 746 aa12.47□□□□□ -0.41
HOXC11-202ENST00000546378 TMEM241Q24JQ0 296 aa12.47□□□□□ -0.41
HOXC11-202ENST00000546378 OR5P3Q8WZ94 311 aa12.47□□□□□ -0.41
HOXC11-202ENST00000546378 STRADBQ9C0K7 418 aa12.47□□□□□ -0.41
HOXC11-202ENST00000546378 DEFB127Q9H1M4 99 aa12.47□□□□□ -0.41
HOXC11-202ENST00000546378 NTN3O00634 580 aaPredicted RBP12.47□□□□□ -0.41
HOXC11-202ENST00000546378 AQP7O14520 342 aa12.47□□□□□ -0.41
HOXC11-202ENST00000546378 GATCO43716 136 aaKnown RBP12.47□□□□□ -0.41
HOXC11-202ENST00000546378 HBE1P02100 147 aa12.47□□□□□ -0.41
HOXC11-202ENST00000546378 F2RP25116 425 aa12.47□□□□□ -0.41
HOXC11-202ENST00000546378 ZNF503-AS2A6NEH8 195 aa12.46□□□□□ -0.41
HOXC11-202ENST00000546378 WNT9BO14905 357 aa12.46□□□□□ -0.41
HOXC11-202ENST00000546378 IGKV1D-33P01593 117 aa12.46□□□□□ -0.41
HOXC11-202ENST00000546378 IGKV1-33P01594 117 aa12.46□□□□□ -0.41
HOXC11-202ENST00000546378 HOXB1P14653 301 aaPredicted RBP12.46□□□□□ -0.41
HOXC11-202ENST00000546378 FAM27BQ5VT28 67 aa12.46□□□□□ -0.41
HOXC11-202ENST00000546378 FAM90A2PQ658T7 463 aa12.46□□□□□ -0.41
HOXC11-202ENST00000546378 OR10G4Q8NGN3 311 aa12.46□□□□□ -0.41
HOXC11-202ENST00000546378 OR10G9Q8NGN4 311 aa12.46□□□□□ -0.41
HOXC11-202ENST00000546378 OR10G7Q8NGN6 311 aa12.46□□□□□ -0.41
HOXC11-202ENST00000546378 MRGPRDQ8TDS7 321 aa12.46□□□□□ -0.41
HOXC11-202ENST00000546378 LEAP2Q969E1 77 aa12.46□□□□□ -0.41
HOXC11-202ENST00000546378 DDA1Q9BW61 102 aa12.46□□□□□ -0.41
HOXC11-202ENST00000546378 OR2D2Q9H210 308 aa12.46□□□□□ -0.41
HOXC11-202ENST00000546378 PARLQ9H300 379 aa12.46□□□□□ -0.41
HOXC11-202ENST00000546378 OR51I2Q9H344 312 aa12.46□□□□□ -0.41
HOXC11-202ENST00000546378 CSMD1Q96PZ7 3565 aa12.46□□□□□ -0.41
HOXC11-202ENST00000546378 ZG16O60844 167 aa12.46□□□□□ -0.42
HOXC11-202ENST00000546378 NDUFB4O95168 129 aa12.46□□□□□ -0.42
HOXC11-202ENST00000546378 C1QTNF9P0C862 333 aa12.46□□□□□ -0.42
HOXC11-202ENST00000546378 CD59P13987 128 aa12.46□□□□□ -0.42
HOXC11-202ENST00000546378 PSMB3P49720 205 aa12.46□□□□□ -0.42
HOXC11-202ENST00000546378 PKIAP61925 76 aa12.46□□□□□ -0.42
HOXC11-202ENST00000546378 DEFB124Q8NES8 71 aa12.46□□□□□ -0.42
HOXC11-202ENST00000546378 OR52L2PQ8NGH6 319 aa12.46□□□□□ -0.42
HOXC11-202ENST00000546378 SAMD10Q9BYL1 202 aa12.46□□□□□ -0.42
HOXC11-202ENST00000546378 SPENQ96T58 3664 aaKnown RBP12.46□□□□□ -0.42
HOXC11-202ENST00000546378 LOC102723971A0A1B0GUV8 181 aa12.45□□□□□ -0.42
HOXC11-202ENST00000546378 SPAARA0A1B0GVQ0 90 aa12.45□□□□□ -0.42
HOXC11-202ENST00000546378 PINLYPA6NC86 204 aa12.45□□□□□ -0.42
HOXC11-202ENST00000546378 CEACAM18A8MTB9 384 aa12.45□□□□□ -0.42
HOXC11-202ENST00000546378 SLC17A3O00476 420 aa12.45□□□□□ -0.42
HOXC11-202ENST00000546378 DFFBO76075 338 aa12.45□□□□□ -0.42
HOXC11-202ENST00000546378 GZMBP10144 247 aa12.45□□□□□ -0.42
HOXC11-202ENST00000546378 ECI1P42126 302 aa12.45□□□□□ -0.42
HOXC11-202ENST00000546378 OR3A1P47881 315 aa12.45□□□□□ -0.42
HOXC11-202ENST00000546378 UCP3P55916 312 aa12.45□□□□□ -0.42
HOXC11-202ENST00000546378 ZFP36L1Q07352 338 aaKnown RBP12.45□□□□□ -0.42
HOXC11-202ENST00000546378 AESQ08117 197 aa12.45□□□□□ -0.42
HOXC11-202ENST00000546378 Q3ZCU0 254 aa12.45□□□□□ -0.42
HOXC11-202ENST00000546378 C1QL4Q86Z23 238 aa12.45□□□□□ -0.42
HOXC11-202ENST00000546378 SERTAD4Q9NUC0 356 aa12.45□□□□□ -0.42
HOXC11-202ENST00000546378 H0Y8G0 127 aa12.45□□□□□ -0.42
HOXC11-202ENST00000546378 FOLR3P41439 243 aa12.45□□□□□ -0.42
HOXC11-202ENST00000546378 ATP5G3P48201 142 aa12.45□□□□□ -0.42
HOXC11-202ENST00000546378 PAX9P55771 341 aa12.45□□□□□ -0.42
HOXC11-202ENST00000546378 SUMO3P55854 103 aaPredicted RBP12.45□□□□□ -0.42
HOXC11-202ENST00000546378 KRTDAPP60985 99 aa12.45□□□□□ -0.42
HOXC11-202ENST00000546378 PAX5Q02548 391 aa12.45□□□□□ -0.42
HOXC11-202ENST00000546378 TDRG1Q3Y452 100 aa12.45□□□□□ -0.42
HOXC11-202ENST00000546378 PEAR1Q5VY43 1037 aaPredicted RBP12.45□□□□□ -0.42
HOXC11-202ENST00000546378 VHLLQ6RSH7 139 aa12.45□□□□□ -0.42
HOXC11-202ENST00000546378 LURAP1LQ8IV03 231 aa12.45□□□□□ -0.42
HOXC11-202ENST00000546378 VN1R17PQ8TDU5 208 aa12.45□□□□□ -0.42
HOXC11-202ENST00000546378 MALSU1Q96EH3 234 aa12.45□□□□□ -0.42
HOXC11-202ENST00000546378 OBP2BQ9NPH6 170 aa12.45□□□□□ -0.42
HOXC11-202ENST00000546378 FBLN5Q9UBX5 448 aa12.45□□□□□ -0.42
HOXC11-202ENST00000546378 SLC31A2O15432 143 aa12.45□□□□□ -0.42
HOXC11-202ENST00000546378 CDS2O95674 445 aa12.45□□□□□ -0.42
HOXC11-202ENST00000546378 IGHV3-48P01763 117 aa12.45□□□□□ -0.42
HOXC11-202ENST00000546378 FGF5P12034 268 aa12.45□□□□□ -0.42
HOXC11-202ENST00000546378 SLC25A6P12236 298 aa12.45□□□□□ -0.42
HOXC11-202ENST00000546378 NTF3P20783 257 aa12.45□□□□□ -0.42
HOXC11-202ENST00000546378 DTYMKP23919 212 aa12.45□□□□□ -0.42
HOXC11-202ENST00000546378 PLP2Q04941 152 aa12.45□□□□□ -0.42
HOXC11-202ENST00000546378 ODF3L1Q8IXM7 274 aa12.45□□□□□ -0.42
HOXC11-202ENST00000546378 RPP25LQ8N5L8 163 aaKnown RBP12.45□□□□□ -0.42
HOXC11-202ENST00000546378 OR1P1Q8NH06 330 aa12.45□□□□□ -0.42
HOXC11-202ENST00000546378 PINX1Q96BK5 328 aaKnown RBP12.45□□□□□ -0.42
HOXC11-202ENST00000546378 SIGLEC12Q96PQ1 595 aa12.45□□□□□ -0.42
HOXC11-202ENST00000546378 ARV1Q9H2C2 271 aa12.45□□□□□ -0.42
HOXC11-202ENST00000546378 GPR35Q9HC97 309 aa12.45□□□□□ -0.42
HOXC11-202ENST00000546378 TANC2Q9HCD6 1990 aa12.44□□□□□ -0.42
HOXC11-202ENST00000546378 LOC102724200A0A096LPH7 203 aaPredicted RBP12.44□□□□□ -0.42
HOXC11-202ENST00000546378 ANKRD30BLA7E2S9 258 aa12.44□□□□□ -0.42
HOXC11-202ENST00000546378 FOXI3A8MTJ6 420 aaPredicted RBP12.44□□□□□ -0.42
HOXC11-202ENST00000546378 RPL36A-HNRNPH2H7BZ11 118 aa12.44□□□□□ -0.42
HOXC11-202ENST00000546378 CCL1P22362 96 aa12.44□□□□□ -0.42
HOXC11-202ENST00000546378 DSCR4P56555 118 aaPredicted RBP12.44□□□□□ -0.42
HOXC11-202ENST00000546378 ARG2P78540 354 aa12.44□□□□□ -0.42
HOXC11-202ENST00000546378 ZNF124Q15973 351 aa12.44□□□□□ -0.42
HOXC11-202ENST00000546378 A0A1W2PPV4 95 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms