RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 FAM90A2PQ658T7 463 aa12.69□□□□□ -0.38
USP28-214ENST00000545540 ZNF525Q8N782 197 aa12.69□□□□□ -0.38
USP28-214ENST00000545540 CLEC18CQ8NCF0 446 aa12.69□□□□□ -0.38
USP28-214ENST00000545540 SLC25A40Q8TBP6 338 aa12.69□□□□□ -0.38
USP28-214ENST00000545540 RELNP78509 3460 aa12.69□□□□□ -0.38
USP28-214ENST00000545540 NDUFS6O75380 124 aaKnown RBP12.69□□□□□ -0.38
USP28-214ENST00000545540 PAX6P26367 422 aa12.69□□□□□ -0.38
USP28-214ENST00000545540 MPV17P39210 176 aa12.69□□□□□ -0.38
USP28-214ENST00000545540 ZNF506Q5JVG8 444 aa12.69□□□□□ -0.38
USP28-214ENST00000545540 ZNF610Q8N9Z0 462 aa12.69□□□□□ -0.38
USP28-214ENST00000545540 ABHD5Q8WTS1 349 aa12.69□□□□□ -0.38
USP28-214ENST00000545540 SPRR3Q9UBC9 169 aa12.69□□□□□ -0.38
USP28-214ENST00000545540 B4E171 279 aa12.68□□□□□ -0.38
USP28-214ENST00000545540 TRGC1P0CF51 173 aa12.68□□□□□ -0.38
USP28-214ENST00000545540 S100PP25815 95 aa12.68□□□□□ -0.38
USP28-214ENST00000545540 ARR3P36575 388 aa12.68□□□□□ -0.38
USP28-214ENST00000545540 MPLP40238 635 aa12.68□□□□□ -0.38
USP28-214ENST00000545540 TSPAN7P41732 249 aa12.68□□□□□ -0.38
USP28-214ENST00000545540 ZNF383Q8NA42 475 aa12.68□□□□□ -0.38
USP28-214ENST00000545540 TMEM204Q9BSN7 226 aa12.68□□□□□ -0.38
USP28-214ENST00000545540 PRO1933Q9H354 126 aa12.68□□□□□ -0.38
USP28-214ENST00000545540 PTPRZ1P23471 2315 aaPredicted RBP12.68□□□□□ -0.38
USP28-214ENST00000545540 LOC102723971A0A1B0GUV8 181 aa12.68□□□□□ -0.38
USP28-214ENST00000545540 IGHEP01854 428 aa12.68□□□□□ -0.38
USP28-214ENST00000545540 SSTR5P35346 364 aa12.68□□□□□ -0.38
USP28-214ENST00000545540 EDDM3AQ14507 147 aa12.68□□□□□ -0.38
USP28-214ENST00000545540 SLC10A1Q14973 349 aa12.68□□□□□ -0.38
USP28-214ENST00000545540 Q6ZR03 302 aa12.68□□□□□ -0.38
USP28-214ENST00000545540 RPP25LQ8N5L8 163 aaKnown RBP12.68□□□□□ -0.38
USP28-214ENST00000545540 LHX4Q969G2 390 aa12.68□□□□□ -0.38
USP28-214ENST00000545540 CTXN2P0C2S0 81 aa12.68□□□□□ -0.38
USP28-214ENST00000545540 GABRA2P47869 451 aa12.68□□□□□ -0.38
USP28-214ENST00000545540 PRSS8Q16651 343 aa12.68□□□□□ -0.38
USP28-214ENST00000545540 WFIKKN1Q96NZ8 548 aa12.68□□□□□ -0.38
USP28-214ENST00000545540 MAP1LC3B2A6NCE7 125 aa12.67□□□□□ -0.38
USP28-214ENST00000545540 BAXQ07812 192 aa12.67□□□□□ -0.38
USP28-214ENST00000545540 GCSAMLQ5JQS6 135 aa12.67□□□□□ -0.38
USP28-214ENST00000545540 C5orf30Q96GV9 206 aa12.67□□□□□ -0.38
USP28-214ENST00000545540 FAM210BQ96KR6 192 aa12.67□□□□□ -0.38
USP28-214ENST00000545540 STRADBQ9C0K7 418 aa12.67□□□□□ -0.38
USP28-214ENST00000545540 MAP1LC3BQ9GZQ8 125 aa12.67□□□□□ -0.38
USP28-214ENST00000545540 CSMD1Q96PZ7 3565 aa12.67□□□□□ -0.38
USP28-214ENST00000545540 A0A1B0GU03 582 aa12.67□□□□□ -0.38
USP28-214ENST00000545540 OR5H1A6NKK0 313 aa12.67□□□□□ -0.38
USP28-214ENST00000545540 C17orf98A8MV24 154 aa12.67□□□□□ -0.38
USP28-214ENST00000545540 ZG16O60844 167 aa12.67□□□□□ -0.38
USP28-214ENST00000545540 TNFSF15O95150 251 aa12.67□□□□□ -0.38
USP28-214ENST00000545540 HSPB1P04792 205 aaKnown RBP12.67□□□□□ -0.38
USP28-214ENST00000545540 SP1P08047 785 aa12.67□□□□□ -0.38
USP28-214ENST00000545540 BCL2P10415 239 aa12.67□□□□□ -0.38
USP28-214ENST00000545540 PPP1CBP62140 327 aa12.67□□□□□ -0.38
USP28-214ENST00000545540 PSG7Q13046 419 aa12.67□□□□□ -0.38
USP28-214ENST00000545540 VKORC1L1Q8N0U8 176 aa12.67□□□□□ -0.38
USP28-214ENST00000545540 ELOVL1Q9BW60 279 aa12.67□□□□□ -0.38
USP28-214ENST00000545540 S1PR2O95136 353 aa12.66□□□□□ -0.38
USP28-214ENST00000545540 MDH2P40926 338 aaKnown RBP12.66□□□□□ -0.38
USP28-214ENST00000545540 GLIPR1P48060 266 aa12.66□□□□□ -0.38
USP28-214ENST00000545540 TFF3Q07654 80 aa12.66□□□□□ -0.38
USP28-214ENST00000545540 SLC38A11Q08AI6 406 aa12.66□□□□□ -0.38
USP28-214ENST00000545540 LINC00470Q9BZP3 86 aa12.66□□□□□ -0.38
USP28-214ENST00000545540 SLC39A9Q9NUM3 307 aa12.66□□□□□ -0.38
USP28-214ENST00000545540 ABCA1O95477 2261 aa12.66□□□□□ -0.38
USP28-214ENST00000545540 FAM90A10PA6NDY2 464 aa12.66□□□□□ -0.38
USP28-214ENST00000545540 FAM90A18PA6NE21 464 aa12.66□□□□□ -0.38
USP28-214ENST00000545540 FAM90A16PA6NEW6 464 aa12.66□□□□□ -0.38
USP28-214ENST00000545540 FAM90A20PA6NIJ5 464 aa12.66□□□□□ -0.38
USP28-214ENST00000545540 FAM90A8PA6NJQ4 464 aa12.66□□□□□ -0.38
USP28-214ENST00000545540 FAM90A7PA6NKC0 464 aa12.66□□□□□ -0.38
USP28-214ENST00000545540 FAM90A22PA8MWA6 464 aa12.66□□□□□ -0.38
USP28-214ENST00000545540 FAM90A12PA8MX19 464 aa12.66□□□□□ -0.38
USP28-214ENST00000545540 FAM90A5PA8MXJ8 464 aa12.66□□□□□ -0.38
USP28-214ENST00000545540 FAM90A23PA8MXZ1 464 aa12.66□□□□□ -0.38
USP28-214ENST00000545540 DFFBO76075 338 aa12.66□□□□□ -0.38
USP28-214ENST00000545540 FAM90A15PP0C7V4 464 aa12.66□□□□□ -0.38
USP28-214ENST00000545540 FAM90A13PP0C7W8 464 aa12.66□□□□□ -0.38
USP28-214ENST00000545540 FAM90A14PP0C7W9 464 aa12.66□□□□□ -0.38
USP28-214ENST00000545540 FAM90A24PP0C7X0 464 aa12.66□□□□□ -0.38
USP28-214ENST00000545540 HOXA5P20719 270 aa12.66□□□□□ -0.38
USP28-214ENST00000545540 S100A2P29034 98 aa12.66□□□□□ -0.38
USP28-214ENST00000545540 ACSM6Q6P461 480 aa12.66□□□□□ -0.38
USP28-214ENST00000545540 UBALD2Q8IYN6 164 aa12.66□□□□□ -0.38
USP28-214ENST00000545540 GAB2Q9UQC2 676 aa12.66□□□□□ -0.38
USP28-214ENST00000545540 ZFHX2Q9C0A1 2572 aaPredicted RBP12.66□□□□□ -0.38
USP28-214ENST00000545540 TNCP24821 2201 aa12.66□□□□□ -0.38
USP28-214ENST00000545540 IFNL4K9M1U5 179 aa12.66□□□□□ -0.38
USP28-214ENST00000545540 ST8SIA5O15466 376 aa12.66□□□□□ -0.38
USP28-214ENST00000545540 YKT6O15498 198 aa12.66□□□□□ -0.38
USP28-214ENST00000545540 ZNF737O75373 536 aa12.66□□□□□ -0.38
USP28-214ENST00000545540 IL2RGP31785 369 aa12.66□□□□□ -0.38
USP28-214ENST00000545540 UBE2G2P60604 165 aa12.66□□□□□ -0.38
USP28-214ENST00000545540 FBXW9Q5XUX1 488 aa12.66□□□□□ -0.38
USP28-214ENST00000545540 GUCD1Q96NT3 240 aa12.66□□□□□ -0.38
USP28-214ENST00000545540 RAB40CQ96S21 281 aa12.66□□□□□ -0.38
USP28-214ENST00000545540 PFDN5Q99471 154 aa12.66□□□□□ -0.38
USP28-214ENST00000545540 OR51M1Q9H341 326 aa12.66□□□□□ -0.38
USP28-214ENST00000545540 J3QT63 122 aa12.65□□□□□ -0.38
USP28-214ENST00000545540 CRYAAP02489 173 aa12.65□□□□□ -0.38
USP28-214ENST00000545540 NKX6-1P78426 367 aaPredicted RBP12.65□□□□□ -0.38
USP28-214ENST00000545540 KHDC3LQ587J8 217 aa12.65□□□□□ -0.38
USP28-214ENST00000545540 Q6ZS49 121 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 104.5 ms