RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 FAM157AC9JC47 383 aa11.52□□□□□ -0.56
RTN3-210ENST00000540798 CHST1O43916 411 aa11.52□□□□□ -0.56
RTN3-210ENST00000540798 LHBP01229 141 aa11.52□□□□□ -0.56
RTN3-210ENST00000540798 RAB5CP51148 216 aa11.52□□□□□ -0.56
RTN3-210ENST00000540798 CR1LQ2VPA4 569 aa11.52□□□□□ -0.56
RTN3-210ENST00000540798 KRBOX4Q5JUW0 171 aa11.52□□□□□ -0.56
RTN3-210ENST00000540798 SH3BGRL3Q9H299 93 aa11.52□□□□□ -0.56
RTN3-210ENST00000540798 UQCC1Q9NVA1 299 aa11.52□□□□□ -0.56
RTN3-210ENST00000540798 CACFD1Q9UGQ2 172 aa11.52□□□□□ -0.56
RTN3-210ENST00000540798 IGKV1D-17A0A075B6S4 117 aa11.52□□□□□ -0.57
RTN3-210ENST00000540798 C15orf65H3BRN8 121 aa11.52□□□□□ -0.57
RTN3-210ENST00000540798 MUC1P15941 1255 aaPredicted RBP11.52□□□□□ -0.57
RTN3-210ENST00000540798 PRDX2P32119 198 aa11.52□□□□□ -0.57
RTN3-210ENST00000540798 GLIPR1P48060 266 aa11.52□□□□□ -0.57
RTN3-210ENST00000540798 AKR1C2P52895 323 aa11.52□□□□□ -0.57
RTN3-210ENST00000540798 KLF3P57682 345 aaPredicted RBP11.52□□□□□ -0.57
RTN3-210ENST00000540798 VAMP2P63027 116 aa11.52□□□□□ -0.57
RTN3-210ENST00000540798 AKR1C1Q04828 323 aa11.52□□□□□ -0.57
RTN3-210ENST00000540798 ZNF266Q14584 549 aa11.52□□□□□ -0.57
RTN3-210ENST00000540798 KIAA2026Q5HYC2 2103 aa11.52□□□□□ -0.57
RTN3-210ENST00000540798 TRAT1Q6PIZ9 186 aa11.52□□□□□ -0.57
RTN3-210ENST00000540798 GCSAMQ8N6F7 178 aa11.52□□□□□ -0.57
RTN3-210ENST00000540798 OR52L2PQ8NGH6 319 aa11.52□□□□□ -0.57
RTN3-210ENST00000540798 MEGF10Q96KG7 1140 aa11.52□□□□□ -0.57
RTN3-210ENST00000540798 PFDN5Q99471 154 aa11.52□□□□□ -0.57
RTN3-210ENST00000540798 KCNS2Q9ULS6 477 aa11.52□□□□□ -0.57
RTN3-210ENST00000540798 CEP250Q9BV73 2442 aa11.52□□□□□ -0.57
RTN3-210ENST00000540798 MGAQ8IWI9 3026 aa11.52□□□□□ -0.57
RTN3-210ENST00000540798 P0C879 139 aa11.51□□□□□ -0.57
RTN3-210ENST00000540798 GATA4P43694 442 aa11.51□□□□□ -0.57
RTN3-210ENST00000540798 SPRNQ5BIV9 151 aa11.51□□□□□ -0.57
RTN3-210ENST00000540798 C22orf34Q6ZV56 151 aa11.51□□□□□ -0.57
RTN3-210ENST00000540798 DOLPP1Q86YN1 238 aa11.51□□□□□ -0.57
RTN3-210ENST00000540798 OR13A1Q8NGR1 328 aa11.51□□□□□ -0.57
RTN3-210ENST00000540798 SEC11CQ9BY50 192 aa11.51□□□□□ -0.57
RTN3-210ENST00000540798 TP53TG5Q9Y2B4 290 aa11.51□□□□□ -0.57
RTN3-210ENST00000540798 STRAPQ9Y3F4 350 aaKnown RBP11.51□□□□□ -0.57
RTN3-210ENST00000540798 DCHS1Q96JQ0 3298 aa11.51□□□□□ -0.57
RTN3-210ENST00000540798 S100A9P06702 114 aaKnown RBP11.51□□□□□ -0.57
RTN3-210ENST00000540798 IL2RGP31785 369 aa11.51□□□□□ -0.57
RTN3-210ENST00000540798 CCKARP32238 428 aa11.51□□□□□ -0.57
RTN3-210ENST00000540798 GABRA2P47869 451 aa11.51□□□□□ -0.57
RTN3-210ENST00000540798 HTD2P86397 168 aa11.51□□□□□ -0.57
RTN3-210ENST00000540798 CLINT1Q14677 625 aa11.51□□□□□ -0.57
RTN3-210ENST00000540798 MRGPRDQ8TDS7 321 aa11.51□□□□□ -0.57
RTN3-210ENST00000540798 TMEM68Q96MH6 324 aa11.51□□□□□ -0.57
RTN3-210ENST00000540798 RAB40CQ96S21 281 aa11.51□□□□□ -0.57
RTN3-210ENST00000540798 SCRT1Q9BWW7 348 aa11.51□□□□□ -0.57
RTN3-210ENST00000540798 DUSP13Q9UII6 198 aa11.51□□□□□ -0.57
RTN3-210ENST00000540798 ID4P47928 161 aa11.51□□□□□ -0.57
RTN3-210ENST00000540798 COMMD1Q8N668 190 aa11.51□□□□□ -0.57
RTN3-210ENST00000540798 ARL6IP6Q8N6S5 226 aa11.51□□□□□ -0.57
RTN3-210ENST00000540798 OR2V2Q96R30 315 aa11.51□□□□□ -0.57
RTN3-210ENST00000540798 RBM7Q9Y580 266 aaKnown RBP11.51□□□□□ -0.57
RTN3-210ENST00000540798 SPTBN2O15020 2390 aa11.5□□□□□ -0.57
RTN3-210ENST00000540798 K7N7A8 449 aa11.5□□□□□ -0.57
RTN3-210ENST00000540798 F12P00748 615 aaPredicted RBP11.5□□□□□ -0.57
RTN3-210ENST00000540798 FAM27E3Q08E93 113 aa11.5□□□□□ -0.57
RTN3-210ENST00000540798 FAM53AQ6NSI3 398 aaPredicted RBP11.5□□□□□ -0.57
RTN3-210ENST00000540798 MRGPRGQ86SM5 289 aa11.5□□□□□ -0.57
RTN3-210ENST00000540798 FAM216AQ8WUB2 273 aa11.5□□□□□ -0.57
RTN3-210ENST00000540798 CACNG5Q9UF02 275 aa11.5□□□□□ -0.57
RTN3-210ENST00000540798 NDRG3Q9UGV2 375 aa11.5□□□□□ -0.57
RTN3-210ENST00000540798 ZNF835Q9Y2P0 537 aa11.5□□□□□ -0.57
RTN3-210ENST00000540798 WSB1Q9Y6I7 421 aa11.5□□□□□ -0.57
RTN3-210ENST00000540798 SVILO95425 2214 aa11.5□□□□□ -0.57
RTN3-210ENST00000540798 ASCL1P50553 236 aa11.5□□□□□ -0.57
RTN3-210ENST00000540798 DYNLT3P51808 116 aa11.5□□□□□ -0.57
RTN3-210ENST00000540798 RPS23P62266 143 aaKnown RBP11.5□□□□□ -0.57
RTN3-210ENST00000540798 OR2B11Q5JQS5 317 aa11.5□□□□□ -0.57
RTN3-210ENST00000540798 SPACA3Q8IXA5 215 aa11.5□□□□□ -0.57
RTN3-210ENST00000540798 OR5C1Q8NGR4 320 aa11.5□□□□□ -0.57
RTN3-210ENST00000540798 FAM222BQ8WU58 562 aa11.5□□□□□ -0.57
RTN3-210ENST00000540798 OR2D2Q9H210 308 aa11.5□□□□□ -0.57
RTN3-210ENST00000540798 OR51M1Q9H341 326 aa11.5□□□□□ -0.57
RTN3-210ENST00000540798 A0A0G2JNJ9 132 aa11.49□□□□□ -0.57
RTN3-210ENST00000540798 RNASEK-C17orf49H0YIS7 233 aa11.49□□□□□ -0.57
RTN3-210ENST00000540798 CRYBA1P05813 215 aa11.49□□□□□ -0.57
RTN3-210ENST00000540798 EPHA1P21709 976 aa11.49□□□□□ -0.57
RTN3-210ENST00000540798 G0S2P27469 103 aa11.49□□□□□ -0.57
RTN3-210ENST00000540798 SSTR5P35346 364 aa11.49□□□□□ -0.57
RTN3-210ENST00000540798 BRWD1-AS2P59051 145 aa11.49□□□□□ -0.57
RTN3-210ENST00000540798 SVBPQ8N300 66 aa11.49□□□□□ -0.57
RTN3-210ENST00000540798 NUP37Q8NFH4 326 aa11.49□□□□□ -0.57
RTN3-210ENST00000540798 SNX22Q96L94 193 aa11.49□□□□□ -0.57
RTN3-210ENST00000540798 TMEM231Q9H6L2 316 aa11.49□□□□□ -0.57
RTN3-210ENST00000540798 JKAMPQ9P055 326 aa11.49□□□□□ -0.57
RTN3-210ENST00000540798 Q9UFV3 132 aa11.49□□□□□ -0.57
RTN3-210ENST00000540798 FAM96BQ9Y3D0 163 aa11.49□□□□□ -0.57
RTN3-210ENST00000540798 ANKRD11Q6UB99 2663 aaPredicted RBP11.49□□□□□ -0.57
RTN3-210ENST00000540798 SNCAP37840 140 aa11.49□□□□□ -0.57
RTN3-210ENST00000540798 RPL30P62888 115 aaKnown RBP11.49□□□□□ -0.57
RTN3-210ENST00000540798 GUCA2BQ16661 112 aa11.49□□□□□ -0.57
RTN3-210ENST00000540798 IZUMO4Q1ZYL8 232 aa11.49□□□□□ -0.57
RTN3-210ENST00000540798 PUSL1Q8N0Z8 303 aaKnown RBP11.49□□□□□ -0.57
RTN3-210ENST00000540798 TCTEX1D1Q8N7M0 179 aa11.49□□□□□ -0.57
RTN3-210ENST00000540798 HSD17B11Q8NBQ5 300 aa11.49□□□□□ -0.57
RTN3-210ENST00000540798 MRPL37Q9BZE1 423 aaKnown RBP11.49□□□□□ -0.57
RTN3-210ENST00000540798 NCOR1P1Q9H4R4 102 aa11.49□□□□□ -0.57
RTN3-210ENST00000540798 TREM1Q9NP99 234 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 62.4 ms