RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 OR9G1Q8NH87 305 aa12.09□□□□□ -0.47
USP3-204ENST00000540797 LHX2P50458 406 aa12.09□□□□□ -0.47
USP3-204ENST00000540797 LY6EQ16553 131 aa12.09□□□□□ -0.47
USP3-204ENST00000540797 PCSK4Q6UW60 755 aa12.09□□□□□ -0.47
USP3-204ENST00000540797 MMD2Q8IY49 270 aa12.09□□□□□ -0.47
USP3-204ENST00000540797 SLC24A4Q8NFF2 622 aa12.09□□□□□ -0.47
USP3-204ENST00000540797 PHYHIPLQ96FC7 376 aa12.09□□□□□ -0.47
USP3-204ENST00000540797 GOLT1BQ9Y3E0 138 aa12.09□□□□□ -0.47
USP3-204ENST00000540797 GLIPR1P48060 266 aa12.09□□□□□ -0.47
USP3-204ENST00000540797 NPBWR2P48146 333 aa12.09□□□□□ -0.47
USP3-204ENST00000540797 UNQ5815/PRO19632Q6UWF5 114 aa12.09□□□□□ -0.47
USP3-204ENST00000540797 ZNF426Q9BUY5 554 aa12.09□□□□□ -0.47
USP3-204ENST00000540797 TMEM106BQ9NUM4 274 aa12.09□□□□□ -0.47
USP3-204ENST00000540797 ICE1Q9Y2F5 2266 aa12.09□□□□□ -0.47
USP3-204ENST00000540797 ZNF729A6NN14 1252 aaPredicted RBP12.09□□□□□ -0.47
USP3-204ENST00000540797 J3KRW8 73 aa12.09□□□□□ -0.47
USP3-204ENST00000540797 HTN1P15515 57 aa12.09□□□□□ -0.47
USP3-204ENST00000540797 CLLU1Q5K131 121 aa12.09□□□□□ -0.47
USP3-204ENST00000540797 FDX2Q6P4F2 183 aa12.09□□□□□ -0.47
USP3-204ENST00000540797 RNASE6Q93091 150 aaKnown RBP12.09□□□□□ -0.47
USP3-204ENST00000540797 RHOVQ96L33 236 aa12.09□□□□□ -0.47
USP3-204ENST00000540797 PDCD11Q14690 1871 aaKnown RBP12.08□□□□□ -0.47
USP3-204ENST00000540797 RCC1P18754 421 aaPredicted RBP12.08□□□□□ -0.47
USP3-204ENST00000540797 AANATQ16613 207 aa12.08□□□□□ -0.47
USP3-204ENST00000540797 CLEC7AQ9BXN2 247 aa12.08□□□□□ -0.47
USP3-204ENST00000540797 DEPPQ9NTK1 212 aa12.08□□□□□ -0.47
USP3-204ENST00000540797 HSF4Q9ULV5 492 aa12.08□□□□□ -0.47
USP3-204ENST00000540797 SCN2AQ99250 2005 aa12.08□□□□□ -0.48
USP3-204ENST00000540797 IGHV2OR16-5A0A0B4J2B6 119 aa12.08□□□□□ -0.48
USP3-204ENST00000540797 H0Y980 276 aa12.08□□□□□ -0.48
USP3-204ENST00000540797 CALHM1Q8IU99 346 aa12.08□□□□□ -0.48
USP3-204ENST00000540797 NEU4Q8WWR8 484 aaPredicted RBP12.08□□□□□ -0.48
USP3-204ENST00000540797 IGHV3OR16-10A0A075B7F0 116 aa12.08□□□□□ -0.48
USP3-204ENST00000540797 PIN1P1O15428 100 aa12.08□□□□□ -0.48
USP3-204ENST00000540797 HLA-DQB1P01920 261 aa12.08□□□□□ -0.48
USP3-204ENST00000540797 MUC1P15941 1255 aaPredicted RBP12.08□□□□□ -0.48
USP3-204ENST00000540797 ID1P41134 155 aa12.08□□□□□ -0.48
USP3-204ENST00000540797 RPL8P62917 257 aaKnown RBP12.08□□□□□ -0.48
USP3-204ENST00000540797 FA2HQ7L5A8 372 aa12.08□□□□□ -0.48
USP3-204ENST00000540797 PNKDQ8N490 385 aa12.08□□□□□ -0.48
USP3-204ENST00000540797 LEAP2Q969E1 77 aa12.08□□□□□ -0.48
USP3-204ENST00000540797 ERVS71-1P61550 626 aa12.08□□□□□ -0.48
USP3-204ENST00000540797 NRN1LQ496H8 165 aa12.08□□□□□ -0.48
USP3-204ENST00000540797 TCTEX1D1Q8N7M0 179 aa12.08□□□□□ -0.48
USP3-204ENST00000540797 NEURL2Q9BR09 285 aa12.08□□□□□ -0.48
USP3-204ENST00000540797 MANBALQ9NQG1 85 aa12.08□□□□□ -0.48
USP3-204ENST00000540797 JPT1Q9UK76 154 aa12.08□□□□□ -0.48
USP3-204ENST00000540797 KLF4O43474 513 aa12.07□□□□□ -0.48
USP3-204ENST00000540797 CXCL3P19876 107 aa12.07□□□□□ -0.48
USP3-204ENST00000540797 C16orf82Q7Z2V1 217 aa12.07□□□□□ -0.48
USP3-204ENST00000540797 C17orf82Q86X59 251 aaPredicted RBP12.07□□□□□ -0.48
USP3-204ENST00000540797 FBLIM1Q8WUP2 373 aa12.07□□□□□ -0.48
USP3-204ENST00000540797 Q96M66 194 aa12.07□□□□□ -0.48
USP3-204ENST00000540797 SLC35B3Q9H1N7 401 aa12.07□□□□□ -0.48
USP3-204ENST00000540797 MTCL1Q9Y4B5 1905 aaKnown RBP12.07□□□□□ -0.48
USP3-204ENST00000540797 IGKV1D-43A0A0B4J1Z2 117 aa12.07□□□□□ -0.48
USP3-204ENST00000540797 SPINK4O60575 86 aa12.07□□□□□ -0.48
USP3-204ENST00000540797 TBR1Q16650 682 aa12.07□□□□□ -0.48
USP3-204ENST00000540797 ZNF586Q9NXT0 402 aa12.07□□□□□ -0.48
USP3-204ENST00000540797 STXBP6Q8NFX7 210 aa12.07□□□□□ -0.48
USP3-204ENST00000540797 C2CD4CQ8TF44 421 aa12.07□□□□□ -0.48
USP3-204ENST00000540797 SCMH1Q96GD3 660 aa12.07□□□□□ -0.48
USP3-204ENST00000540797 OPN4Q9UHM6 478 aa12.07□□□□□ -0.48
USP3-204ENST00000540797 DOCK6Q96HP0 2047 aa12.07□□□□□ -0.48
USP3-204ENST00000540797 HAX1O00165 279 aa12.07□□□□□ -0.48
USP3-204ENST00000540797 NEURL1O76050 574 aa12.07□□□□□ -0.48
USP3-204ENST00000540797 SLC25A17O43808 307 aa12.07□□□□□ -0.48
USP3-204ENST00000540797 CRYBA2P53672 197 aa12.07□□□□□ -0.48
USP3-204ENST00000540797 HCP5Q6MZN7 132 aa12.07□□□□□ -0.48
USP3-204ENST00000540797 TMEM88Q6PEY1 159 aa12.07□□□□□ -0.48
USP3-204ENST00000540797 HIGD1AQ9Y241 93 aa12.07□□□□□ -0.48
USP3-204ENST00000540797 NCOR1O75376 2440 aa12.06□□□□□ -0.48
USP3-204ENST00000540797 ZNF646O15015 1829 aaPredicted RBP12.06□□□□□ -0.48
USP3-204ENST00000540797 GALR1P47211 349 aa12.06□□□□□ -0.48
USP3-204ENST00000540797 MESP1Q9BRJ9 268 aa12.06□□□□□ -0.48
USP3-204ENST00000540797 GHITMQ9H3K2 345 aa12.06□□□□□ -0.48
USP3-204ENST00000540797 CDRT15L2A8MXV6 281 aa12.06□□□□□ -0.48
USP3-204ENST00000540797 TMEM30BQ3MIR4 351 aa12.06□□□□□ -0.48
USP3-204ENST00000540797 UNQ9370/PRO34162Q6UXP9 181 aa12.06□□□□□ -0.48
USP3-204ENST00000540797 ZNF705AQ6ZN79 300 aaPredicted RBP12.06□□□□□ -0.48
USP3-204ENST00000540797 ZNRF1Q8ND25 227 aa12.06□□□□□ -0.48
USP3-204ENST00000540797 TLNRD1Q9H1K6 362 aa12.06□□□□□ -0.48
USP3-204ENST00000540797 WNT9BO14905 357 aa12.06□□□□□ -0.48
USP3-204ENST00000540797 SPCS3P61009 180 aa12.06□□□□□ -0.48
USP3-204ENST00000540797 RBPMS2Q6ZRY4 209 aaKnown RBP12.06□□□□□ -0.48
USP3-204ENST00000540797 TPPP2P59282 170 aa12.06□□□□□ -0.48
USP3-204ENST00000540797 OR4A5Q8NH83 315 aa12.06□□□□□ -0.48
USP3-204ENST00000540797 AQP3Q92482 292 aa12.06□□□□□ -0.48
USP3-204ENST00000540797 FAM168AQ92567 244 aa12.06□□□□□ -0.48
USP3-204ENST00000540797 TMEM186Q96B77 213 aa12.06□□□□□ -0.48
USP3-204ENST00000540797 PPP1R3EQ9H7J1 279 aa12.06□□□□□ -0.48
USP3-204ENST00000540797 C11orf94C9JXX5 98 aa12.05□□□□□ -0.48
USP3-204ENST00000540797 CD200R1LQ6Q8B3 271 aa12.05□□□□□ -0.48
USP3-204ENST00000540797 ALX4Q9H161 411 aaPredicted RBP12.05□□□□□ -0.48
USP3-204ENST00000540797 CEP250Q9BV73 2442 aa12.05□□□□□ -0.48
USP3-204ENST00000540797 hCG_38984A0A1B0GV85 526 aa12.05□□□□□ -0.48
USP3-204ENST00000540797 CEACAM18A8MTB9 384 aa12.05□□□□□ -0.48
USP3-204ENST00000540797 PGLYRP1O75594 196 aaPredicted RBP12.05□□□□□ -0.48
USP3-204ENST00000540797 HIST1H1EP10412 219 aaKnown RBP12.05□□□□□ -0.48
USP3-204ENST00000540797 KHDC3LQ587J8 217 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms