RNA–Protein interactions for RNA: ENST00000539417.6

RPAIN-206, Transcript of RPA interacting protein, humanhuman

TSL 2

Gene RPAIN, Length 1,471 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPAIN-206ENST00000539417 ZBTB25P24278 435 aa12.57□□□□□ -0.4
RPAIN-206ENST00000539417 TMBIM6P55061 237 aa12.57□□□□□ -0.4
RPAIN-206ENST00000539417 LINC00205P59089 165 aa12.57□□□□□ -0.4
RPAIN-206ENST00000539417 TAS2R20P59543 309 aa12.57□□□□□ -0.4
RPAIN-206ENST00000539417 ARL6IP1Q15041 203 aa12.57□□□□□ -0.4
RPAIN-206ENST00000539417 LIAT1Q6ZQX7 453 aa12.57□□□□□ -0.4
RPAIN-206ENST00000539417 Q6ZS49 121 aa12.57□□□□□ -0.4
RPAIN-206ENST00000539417 ZNF833PQ6ZTB9 187 aa12.57□□□□□ -0.4
RPAIN-206ENST00000539417 TGIF2LXQ8IUE1 241 aa12.57□□□□□ -0.4
RPAIN-206ENST00000539417 PHF21AQ96BD5 680 aa12.57□□□□□ -0.4
RPAIN-206ENST00000539417 ISOC1Q96CN7 298 aa12.57□□□□□ -0.4
RPAIN-206ENST00000539417 S100A16Q96FQ6 103 aaKnown RBP12.57□□□□□ -0.4
RPAIN-206ENST00000539417 C5orf30Q96GV9 206 aa12.57□□□□□ -0.4
RPAIN-206ENST00000539417 RBM14Q96PK6 669 aaKnown RBP12.57□□□□□ -0.4
RPAIN-206ENST00000539417 DIABLOQ9NR28 239 aa12.57□□□□□ -0.4
RPAIN-206ENST00000539417 PITPNC1Q9UKF7 332 aa12.57□□□□□ -0.4
RPAIN-206ENST00000539417 MMP24Q9Y5R2 645 aa12.57□□□□□ -0.4
RPAIN-206ENST00000539417 LANCL1O43813 399 aa12.56□□□□□ -0.4
RPAIN-206ENST00000539417 ZNF182P17025 639 aaPredicted RBP12.56□□□□□ -0.4
RPAIN-206ENST00000539417 IL3RAP26951 378 aa12.56□□□□□ -0.4
RPAIN-206ENST00000539417 KIR2DS4P43632 304 aa12.56□□□□□ -0.4
RPAIN-206ENST00000539417 PROK1P58294 105 aa12.56□□□□□ -0.4
RPAIN-206ENST00000539417 KIR2DS1Q14954 304 aa12.56□□□□□ -0.4
RPAIN-206ENST00000539417 SRSF7Q16629 238 aaKnown RBP eCLIP12.56□□□□□ -0.4
RPAIN-206ENST00000539417 TMEM95Q3KNT9 176 aa12.56□□□□□ -0.4
RPAIN-206ENST00000539417 FOXB2Q5VYV0 432 aa12.56□□□□□ -0.4
RPAIN-206ENST00000539417 THNSL2Q86YJ6 484 aa12.56□□□□□ -0.4
RPAIN-206ENST00000539417 C3orf56Q8N813 242 aa12.56□□□□□ -0.4
RPAIN-206ENST00000539417 DYNC2LI1Q8TCX1 351 aa12.56□□□□□ -0.4
RPAIN-206ENST00000539417 RAB2BQ8WUD1 216 aa12.56□□□□□ -0.4
RPAIN-206ENST00000539417 EAF1Q96JC9 268 aaPredicted RBP12.56□□□□□ -0.4
RPAIN-206ENST00000539417 RITA1Q96K30 269 aa12.56□□□□□ -0.4
RPAIN-206ENST00000539417 NABP2Q9BQ15 211 aa12.56□□□□□ -0.4
RPAIN-206ENST00000539417 TOLLIPQ9H0E2 274 aa12.56□□□□□ -0.4
RPAIN-206ENST00000539417 BEX1Q9HBH7 125 aa12.56□□□□□ -0.4
RPAIN-206ENST00000539417 RNF114Q9Y508 228 aa12.56□□□□□ -0.4
RPAIN-206ENST00000539417 HAX1O00165 279 aa12.55□□□□□ -0.4
RPAIN-206ENST00000539417 OR2F2O95006 317 aa12.55□□□□□ -0.4
RPAIN-206ENST00000539417 HLA-DQB1P01920 261 aa12.55□□□□□ -0.4
RPAIN-206ENST00000539417 FAM106CPP0CH98 169 aa12.55□□□□□ -0.4
RPAIN-206ENST00000539417 EBI3Q14213 229 aa12.55□□□□□ -0.4
RPAIN-206ENST00000539417 HES1Q14469 280 aa12.55□□□□□ -0.4
RPAIN-206ENST00000539417 TMEM69Q5SWH9 247 aa12.55□□□□□ -0.4
RPAIN-206ENST00000539417 GLDNQ6ZMI3 551 aaPredicted RBP12.55□□□□□ -0.4
RPAIN-206ENST00000539417 Q8N6K4 173 aa12.55□□□□□ -0.4
RPAIN-206ENST00000539417 WFDC12Q8WWY7 111 aa12.55□□□□□ -0.4
RPAIN-206ENST00000539417 DGCR14Q96DF8 476 aaKnown RBP12.55□□□□□ -0.4
RPAIN-206ENST00000539417 MIXL1Q9H2W2 232 aa12.55□□□□□ -0.4
RPAIN-206ENST00000539417 RAB18Q9NP72 206 aa12.55□□□□□ -0.4
RPAIN-206ENST00000539417 J3QRK9 145 aa12.54□□□□□ -0.4
RPAIN-206ENST00000539417 ITGB1BP1O14713 200 aa12.54□□□□□ -0.4
RPAIN-206ENST00000539417 APOA1P02647 267 aa12.54□□□□□ -0.4
RPAIN-206ENST00000539417 TMEM11P17152 192 aa12.54□□□□□ -0.4
RPAIN-206ENST00000539417 ARHGDIBP52566 201 aa12.54□□□□□ -0.4
RPAIN-206ENST00000539417 PITPNAQ00169 270 aa12.54□□□□□ -0.4
RPAIN-206ENST00000539417 LSAMPQ13449 338 aa12.54□□□□□ -0.4
RPAIN-206ENST00000539417 H1FOOQ8IZA3 346 aaPredicted RBP12.54□□□□□ -0.4
RPAIN-206ENST00000539417 DRAXINQ8NBI3 349 aaPredicted RBP12.54□□□□□ -0.4
RPAIN-206ENST00000539417 OR4C13Q8NGP0 309 aa12.54□□□□□ -0.4
RPAIN-206ENST00000539417 OR10J5Q8NHC4 309 aa12.54□□□□□ -0.4
RPAIN-206ENST00000539417 ACOT12Q8WYK0 555 aa12.54□□□□□ -0.4
RPAIN-206ENST00000539417 SNAPC3Q92966 411 aa12.54□□□□□ -0.4
RPAIN-206ENST00000539417 ZNF747Q9BV97 191 aa12.54□□□□□ -0.4
RPAIN-206ENST00000539417 NPFFR1Q9GZQ6 430 aa12.54□□□□□ -0.4
RPAIN-206ENST00000539417 RBM38Q9H0Z9 239 aaKnown RBP12.54□□□□□ -0.4
RPAIN-206ENST00000539417 SERTAD4Q9NUC0 356 aa12.54□□□□□ -0.4
RPAIN-206ENST00000539417 CMYA5Q8N3K9 4069 aa12.54□□□□□ -0.4
RPAIN-206ENST00000539417 CTDSP2O14595 271 aa12.53□□□□□ -0.4
RPAIN-206ENST00000539417 OR8U9P0C7N5 309 aa12.53□□□□□ -0.4
RPAIN-206ENST00000539417 CT45A6P0DMU7 189 aa12.53□□□□□ -0.4
RPAIN-206ENST00000539417 CT45A5P0DMU8 189 aa12.53□□□□□ -0.4
RPAIN-206ENST00000539417 CT45A7P0DMV0 189 aa12.53□□□□□ -0.4
RPAIN-206ENST00000539417 NFYAP23511 347 aaPredicted RBP12.53□□□□□ -0.4
RPAIN-206ENST00000539417 CD1BP29016 333 aa12.53□□□□□ -0.4
RPAIN-206ENST00000539417 ABCA11PQ4W5N1 156 aa12.53□□□□□ -0.4
RPAIN-206ENST00000539417 HOGA1Q86XE5 327 aa12.53□□□□□ -0.4
RPAIN-206ENST00000539417 Q8N2B8 174 aa12.53□□□□□ -0.4
RPAIN-206ENST00000539417 OR8U1Q8NH10 309 aa12.53□□□□□ -0.4
RPAIN-206ENST00000539417 TSC22D3Q99576 134 aa12.53□□□□□ -0.4
RPAIN-206ENST00000539417 RANBP3Q9H6Z4 567 aaPredicted RBP12.53□□□□□ -0.4
RPAIN-206ENST00000539417 PLSCR3Q9NRY6 295 aa12.53□□□□□ -0.4
RPAIN-206ENST00000539417 ANXA10Q9UJ72 324 aa12.53□□□□□ -0.4
RPAIN-206ENST00000539417 MRPS7Q9Y2R9 242 aaKnown RBP12.53□□□□□ -0.4
RPAIN-206ENST00000539417 TRRAPQ9Y4A5 3859 aa12.53□□□□□ -0.4
RPAIN-206ENST00000539417 RAB29O14966 203 aa12.53□□□□□ -0.4
RPAIN-206ENST00000539417 CNTFRP26992 372 aa12.53□□□□□ -0.4
RPAIN-206ENST00000539417 F2RL1P55085 397 aa12.53□□□□□ -0.4
RPAIN-206ENST00000539417 BEST4Q8NFU0 473 aa12.53□□□□□ -0.4
RPAIN-206ENST00000539417 EDARADDQ8WWZ3 215 aa12.53□□□□□ -0.4
RPAIN-206ENST00000539417 CMTM3Q96MX0 182 aa12.53□□□□□ -0.4
RPAIN-206ENST00000539417 PIPOXQ9P0Z9 390 aa12.53□□□□□ -0.4
RPAIN-206ENST00000539417 IGKV1D-13A0A0B4J2D9 117 aa12.52□□□□□ -0.41
RPAIN-206ENST00000539417 TXNL1O43396 289 aa12.52□□□□□ -0.41
RPAIN-206ENST00000539417 IGKV1-13P0DP09 117 aa12.52□□□□□ -0.41
RPAIN-206ENST00000539417 CNPY1Q3B7I2 92 aa12.52□□□□□ -0.41
RPAIN-206ENST00000539417 CNIH2Q6PI25 160 aa12.52□□□□□ -0.41
RPAIN-206ENST00000539417 C11orf88Q6PI97 169 aa12.52□□□□□ -0.41
RPAIN-206ENST00000539417 FAM131AQ6UXB0 335 aa12.52□□□□□ -0.41
RPAIN-206ENST00000539417 C16orf82Q7Z2V1 217 aa12.52□□□□□ -0.41
RPAIN-206ENST00000539417 SNX29P2Q8IUI4 249 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms