RNA–Protein interactions for RNA: ENST00000534556.1

USH1C-210, Transcript of USH1 protein network component harmonin, humanhuman

TSL 3

Gene USH1C, Length 244 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-210ENST00000534556 M0QZ24 198 aa3.97□□□□□ -1.77
USH1C-210ENST00000534556 FGF16O43320 207 aa3.97□□□□□ -1.77
USH1C-210ENST00000534556 SOX15O60248 233 aa3.97□□□□□ -1.77
USH1C-210ENST00000534556 OPN1MWP04001 364 aa3.97□□□□□ -1.77
USH1C-210ENST00000534556 FCGR3AP08637 254 aa3.97□□□□□ -1.77
USH1C-210ENST00000534556 FAM106CPP0CH98 169 aa3.97□□□□□ -1.77
USH1C-210ENST00000534556 OPN1MW2P0DN77 364 aa3.97□□□□□ -1.77
USH1C-210ENST00000534556 OPN1MW3P0DN78 364 aa3.97□□□□□ -1.77
USH1C-210ENST00000534556 HIST1H1DP16402 221 aaKnown RBP3.97□□□□□ -1.77
USH1C-210ENST00000534556 CD36P16671 472 aa3.97□□□□□ -1.77
USH1C-210ENST00000534556 GALP22466 123 aa3.97□□□□□ -1.77
USH1C-210ENST00000534556 RPS19P39019 145 aaKnown RBP3.97□□□□□ -1.77
USH1C-210ENST00000534556 CEACAM6P40199 344 aa3.97□□□□□ -1.77
USH1C-210ENST00000534556 MNDAP41218 407 aa3.97□□□□□ -1.77
USH1C-210ENST00000534556 GPR12P47775 334 aa3.97□□□□□ -1.77
USH1C-210ENST00000534556 C2orf68Q2NKX9 166 aa3.97□□□□□ -1.77
USH1C-210ENST00000534556 ZNF260Q3ZCT1 412 aa3.97□□□□□ -1.77
USH1C-210ENST00000534556 C19orf54Q5BKX5 351 aa3.97□□□□□ -1.77
USH1C-210ENST00000534556 STEAP3Q658P3 488 aa3.97□□□□□ -1.77
USH1C-210ENST00000534556 CCDC144NLQ6NUI1 221 aa3.97□□□□□ -1.77
USH1C-210ENST00000534556 FAM131AQ6UXB0 335 aa3.97□□□□□ -1.77
USH1C-210ENST00000534556 ZNF554Q86TJ5 538 aa3.97□□□□□ -1.77
USH1C-210ENST00000534556 NDUFA11Q86Y39 141 aa3.97□□□□□ -1.77
USH1C-210ENST00000534556 TGIF2LXQ8IUE1 241 aa3.97□□□□□ -1.77
USH1C-210ENST00000534556 DTX3Q8N9I9 347 aa3.97□□□□□ -1.77
USH1C-210ENST00000534556 ZNF383Q8NA42 475 aa3.97□□□□□ -1.77
USH1C-210ENST00000534556 DRAXINQ8NBI3 349 aaPredicted RBP3.97□□□□□ -1.77
USH1C-210ENST00000534556 OR10R2Q8NGX6 335 aa3.97□□□□□ -1.77
USH1C-210ENST00000534556 OR2T10Q8NGZ9 312 aa3.97□□□□□ -1.77
USH1C-210ENST00000534556 SETD6Q8TBK2 473 aa3.97□□□□□ -1.77
USH1C-210ENST00000534556 LGALS14Q8TCE9 139 aa3.97□□□□□ -1.77
USH1C-210ENST00000534556 IL1F10Q8WWZ1 152 aa3.97□□□□□ -1.77
USH1C-210ENST00000534556 GALMQ96C23 342 aa3.97□□□□□ -1.77
USH1C-210ENST00000534556 DUX3Q96PT4 197 aa3.97□□□□□ -1.77
USH1C-210ENST00000534556 CMSS1Q9BQ75 279 aaKnown RBP3.97□□□□□ -1.77
USH1C-210ENST00000534556 URM1Q9BTM9 101 aaKnown RBP3.97□□□□□ -1.77
USH1C-210ENST00000534556 NAA50Q9GZZ1 169 aaKnown RBP3.97□□□□□ -1.77
USH1C-210ENST00000534556 TOLLIPQ9H0E2 274 aa3.97□□□□□ -1.77
USH1C-210ENST00000534556 ABCG5Q9H222 651 aa3.97□□□□□ -1.77
USH1C-210ENST00000534556 KLK15Q9H2R5 256 aa3.97□□□□□ -1.77
USH1C-210ENST00000534556 TPSG1Q9NRR2 321 aa3.97□□□□□ -1.77
USH1C-210ENST00000534556 SLC23A1Q9UHI7 598 aa3.97□□□□□ -1.77
USH1C-210ENST00000534556 DAPK2Q9UIK4 370 aa3.97□□□□□ -1.77
USH1C-210ENST00000534556 CSMD3Q7Z407 3707 aa3.97□□□□□ -1.77
USH1C-210ENST00000534556 TRBV6-7A0A0A0MS04 114 aa3.96□□□□□ -1.78
USH1C-210ENST00000534556 IGHV7-81A0A0B4J1V7 117 aa3.96□□□□□ -1.78
USH1C-210ENST00000534556 IGKV1D-13A0A0B4J2D9 117 aa3.96□□□□□ -1.78
USH1C-210ENST00000534556 LOC100506127A0A0U1RQW1 187 aa3.96□□□□□ -1.78
USH1C-210ENST00000534556 TMEM235A6NFC5 223 aa3.96□□□□□ -1.78
USH1C-210ENST00000534556 NCBP2LA6PVI3 153 aaKnown RBP3.96□□□□□ -1.78
USH1C-210ENST00000534556 NOTOA8MTQ0 251 aa3.96□□□□□ -1.78
USH1C-210ENST00000534556 TRDCB7Z8K6 153 aa3.96□□□□□ -1.78
USH1C-210ENST00000534556 G3V318 75 aa3.96□□□□□ -1.78
USH1C-210ENST00000534556 H0YJW9 148 aa3.96□□□□□ -1.78
USH1C-210ENST00000534556 ITGB1BP1O14713 200 aa3.96□□□□□ -1.78
USH1C-210ENST00000534556 NDUFA3O95167 84 aa3.96□□□□□ -1.78
USH1C-210ENST00000534556 MOSP00540 346 aa3.96□□□□□ -1.78
USH1C-210ENST00000534556 IGLV2-14P01704 120 aa3.96□□□□□ -1.78
USH1C-210ENST00000534556 IGKV1-16P04430 117 aa3.96□□□□□ -1.78
USH1C-210ENST00000534556 RPLP1P05386 114 aaKnown RBP3.96□□□□□ -1.78
USH1C-210ENST00000534556 IGKV1-13P0DP09 117 aa3.96□□□□□ -1.78
USH1C-210ENST00000534556 IGLL1P15814 213 aa3.96□□□□□ -1.78
USH1C-210ENST00000534556 RAB6AP20340 208 aa3.96□□□□□ -1.78
USH1C-210ENST00000534556 PPIFP30405 207 aaKnown RBP3.96□□□□□ -1.78
USH1C-210ENST00000534556 BRWD1-AS2P59051 145 aa3.96□□□□□ -1.78
USH1C-210ENST00000534556 KRTAP10-11P60412 298 aa3.96□□□□□ -1.78
USH1C-210ENST00000534556 ACTBP60709 375 aa3.96□□□□□ -1.78
USH1C-210ENST00000534556 LSM3P62310 102 aaKnown RBP3.96□□□□□ -1.78
USH1C-210ENST00000534556 DEFB136Q30KP8 78 aa3.96□□□□□ -1.78
USH1C-210ENST00000534556 TMEM30BQ3MIR4 351 aa3.96□□□□□ -1.78
USH1C-210ENST00000534556 CDNFQ49AH0 187 aa3.96□□□□□ -1.78
USH1C-210ENST00000534556 PDLIM3Q53GG5 364 aaPredicted RBP3.96□□□□□ -1.78
USH1C-210ENST00000534556 KPRPQ5T749 579 aaPredicted RBP3.96□□□□□ -1.78
USH1C-210ENST00000534556 ASPHD1Q5U4P2 390 aa3.96□□□□□ -1.78
USH1C-210ENST00000534556 SFXN4Q6P4A7 337 aa3.96□□□□□ -1.78
USH1C-210ENST00000534556 TRAT1Q6PIZ9 186 aa3.96□□□□□ -1.78
USH1C-210ENST00000534556 SLC35E3Q7Z769 313 aa3.96□□□□□ -1.78
USH1C-210ENST00000534556 CENPVQ7Z7K6 275 aaPredicted RBP3.96□□□□□ -1.78
USH1C-210ENST00000534556 STPG2Q8N412 459 aa3.96□□□□□ -1.78
USH1C-210ENST00000534556 GVQW1Q8N7I0 195 aa3.96□□□□□ -1.78
USH1C-210ENST00000534556 WFDC9Q8NEX5 89 aa3.96□□□□□ -1.78
USH1C-210ENST00000534556 NPBQ8NG41 125 aa3.96□□□□□ -1.78
USH1C-210ENST00000534556 OR56B1Q8NGI3 324 aa3.96□□□□□ -1.78
USH1C-210ENST00000534556 CASTOR1Q8WTX7 329 aa3.96□□□□□ -1.78
USH1C-210ENST00000534556 NUDCD2Q8WVJ2 157 aa3.96□□□□□ -1.78
USH1C-210ENST00000534556 PTX4Q96A99 478 aa3.96□□□□□ -1.78
USH1C-210ENST00000534556 R3HDM4Q96D70 268 aa3.96□□□□□ -1.78
USH1C-210ENST00000534556 RAB3CQ96E17 227 aa3.96□□□□□ -1.78
USH1C-210ENST00000534556 GPHA2Q96T91 129 aa3.96□□□□□ -1.78
USH1C-210ENST00000534556 CABLES2Q9BTV7 478 aa3.96□□□□□ -1.78
USH1C-210ENST00000534556 ATG5Q9H1Y0 275 aa3.96□□□□□ -1.78
USH1C-210ENST00000534556 FBXL15Q9H469 300 aa3.96□□□□□ -1.78
USH1C-210ENST00000534556 CHMP1AQ9HD42 196 aaPredicted RBP3.96□□□□□ -1.78
USH1C-210ENST00000534556 C12orf4Q9NQ89 552 aa3.96□□□□□ -1.78
USH1C-210ENST00000534556 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP3.96□□□□□ -1.78
USH1C-210ENST00000534556 RDH8Q9NYR8 311 aa3.96□□□□□ -1.78
USH1C-210ENST00000534556 KCNIP1Q9NZI2 227 aa3.96□□□□□ -1.78
USH1C-210ENST00000534556 SPATA2Q9UM82 520 aa3.96□□□□□ -1.78
USH1C-210ENST00000534556 TCRBV4S1A1TA0A5B7 111 aa3.95□□□□□ -1.78
USH1C-210ENST00000534556 PSMB11A5LHX3 300 aa3.95□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms