RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 YPEL2Q96QA6 119 aa17.17■□□□□ 0.34
VPS28-209ENST00000528142 TMEM106BQ9NUM4 274 aa17.17■□□□□ 0.34
VPS28-209ENST00000528142 CALYQ9NYX4 217 aa17.17■□□□□ 0.34
VPS28-209ENST00000528142 TRAV38-1A0A0B4J264 116 aa17.17■□□□□ 0.34
VPS28-209ENST00000528142 PITX3O75364 302 aa17.17■□□□□ 0.34
VPS28-209ENST00000528142 PRB1P04280 392 aa17.17■□□□□ 0.34
VPS28-209ENST00000528142 SLC25A6P12236 298 aa17.17■□□□□ 0.34
VPS28-209ENST00000528142 NKX2-1P43699 371 aaPredicted RBP17.17■□□□□ 0.34
VPS28-209ENST00000528142 ID3Q02535 119 aa17.17■□□□□ 0.34
VPS28-209ENST00000528142 LTC4SQ16873 150 aa17.17■□□□□ 0.34
VPS28-209ENST00000528142 SWI5Q1ZZU3 235 aa17.17■□□□□ 0.34
VPS28-209ENST00000528142 CXorf66Q5JRM2 361 aaPredicted RBP17.17■□□□□ 0.34
VPS28-209ENST00000528142 THOC7Q6I9Y2 204 aaKnown RBP17.17■□□□□ 0.34
VPS28-209ENST00000528142 C1orf87Q8N0U7 546 aa17.17■□□□□ 0.34
VPS28-209ENST00000528142 LSM10Q969L4 123 aaKnown RBP17.17■□□□□ 0.34
VPS28-209ENST00000528142 ADGRG4Q8IZF6 3080 aa17.16■□□□□ 0.34
VPS28-209ENST00000528142 TAAR5O14804 337 aa17.16■□□□□ 0.34
VPS28-209ENST00000528142 TNFRSF13BO14836 293 aaPredicted RBP17.16■□□□□ 0.34
VPS28-209ENST00000528142 ST8SIA5O15466 376 aa17.16■□□□□ 0.34
VPS28-209ENST00000528142 ZNF16P17020 682 aaPredicted RBP17.16■□□□□ 0.34
VPS28-209ENST00000528142 P2RY1P47900 373 aa17.16■□□□□ 0.34
VPS28-209ENST00000528142 RPL30P62888 115 aaKnown RBP17.16■□□□□ 0.34
VPS28-209ENST00000528142 TCF23Q7RTU1 214 aa17.16■□□□□ 0.34
VPS28-209ENST00000528142 ZNF808Q8N4W9 903 aaPredicted RBP17.16■□□□□ 0.34
VPS28-209ENST00000528142 FAM216AQ8WUB2 273 aa17.16■□□□□ 0.34
VPS28-209ENST00000528142 CITED4Q96RK1 184 aa17.16■□□□□ 0.34
VPS28-209ENST00000528142 TMEM204Q9BSN7 226 aa17.16■□□□□ 0.34
VPS28-209ENST00000528142 GNG12Q9UBI6 72 aa17.16■□□□□ 0.34
VPS28-209ENST00000528142 PSG11Q9UQ72 335 aa17.16■□□□□ 0.34
VPS28-209ENST00000528142 DYSFO75923 2080 aa17.16■□□□□ 0.34
VPS28-209ENST00000528142 DSCAMO60469 2012 aa17.16■□□□□ 0.34
VPS28-209ENST00000528142 PPIAL4EA0A075B759 164 aa17.15■□□□□ 0.34
VPS28-209ENST00000528142 A0A1B0GU03 582 aa17.15■□□□□ 0.34
VPS28-209ENST00000528142 PPIAL4DF5H284 164 aa17.15■□□□□ 0.34
VPS28-209ENST00000528142 IGKV1-5P01602 117 aa17.15■□□□□ 0.34
VPS28-209ENST00000528142 PPIAL4FP0DN26 164 aa17.15■□□□□ 0.34
VPS28-209ENST00000528142 TPT1P13693 172 aaKnown RBP17.15■□□□□ 0.34
VPS28-209ENST00000528142 GNLYP22749 145 aa17.15■□□□□ 0.34
VPS28-209ENST00000528142 BAP18Q8IXM2 172 aa17.15■□□□□ 0.34
VPS28-209ENST00000528142 EDARADDQ8WWZ3 215 aa17.15■□□□□ 0.34
VPS28-209ENST00000528142 CCL17Q92583 94 aa17.15■□□□□ 0.34
VPS28-209ENST00000528142 SLC25A32Q9H2D1 315 aa17.15■□□□□ 0.34
VPS28-209ENST00000528142 SDHAF2Q9NX18 166 aa17.15■□□□□ 0.34
VPS28-209ENST00000528142 PPIAL4AQ9Y536 164 aa17.15■□□□□ 0.34
VPS28-209ENST00000528142 HIVEP3Q5T1R4 2406 aa17.15■□□□□ 0.34
VPS28-209ENST00000528142 KBTBD11-OT1A0A1B0GTJ5 212 aa17.14■□□□□ 0.34
VPS28-209ENST00000528142 RRASP10301 218 aa17.14■□□□□ 0.34
VPS28-209ENST00000528142 POLR2GP62487 172 aaKnown RBP eCLIP17.14■□□□□ 0.34
VPS28-209ENST00000528142 ZNF672Q499Z4 452 aaPredicted RBP17.14■□□□□ 0.34
VPS28-209ENST00000528142 GPR157Q5UAW9 335 aa17.14■□□□□ 0.34
VPS28-209ENST00000528142 CORO2AQ92828 525 aa17.14■□□□□ 0.34
VPS28-209ENST00000528142 ZC4H2Q9NQZ6 224 aa17.14■□□□□ 0.34
VPS28-209ENST00000528142 CLN8Q9UBY8 286 aa17.14■□□□□ 0.34
VPS28-209ENST00000528142 TRGV10A0A0A0MS01 117 aa17.14■□□□□ 0.33
VPS28-209ENST00000528142 NKX6-3A6NJ46 265 aa17.14■□□□□ 0.33
VPS28-209ENST00000528142 GPR137BO60478 399 aa17.14■□□□□ 0.33
VPS28-209ENST00000528142 OMGP23515 440 aa17.14■□□□□ 0.33
VPS28-209ENST00000528142 TMEM33P57088 247 aa17.14■□□□□ 0.33
VPS28-209ENST00000528142 BRWD1-AS2P59051 145 aa17.14■□□□□ 0.33
VPS28-209ENST00000528142 FAM74A1Q5RGS3 127 aa17.14■□□□□ 0.33
VPS28-209ENST00000528142 Q6ZRM9 215 aa17.14■□□□□ 0.33
VPS28-209ENST00000528142 FGFRL1Q8N441 504 aa17.14■□□□□ 0.33
VPS28-209ENST00000528142 LINC00574Q9H8X3 128 aa17.14■□□□□ 0.33
VPS28-209ENST00000528142 KIAA1324LA8MWY0 1029 aaPredicted RBP17.13■□□□□ 0.33
VPS28-209ENST00000528142 TMPRSS2O15393 492 aa17.13■□□□□ 0.33
VPS28-209ENST00000528142 LPAR6P43657 344 aa17.13■□□□□ 0.33
VPS28-209ENST00000528142 ZNF66Q6ZN08 573 aa17.13■□□□□ 0.33
VPS28-209ENST00000528142 COMMD7Q86VX2 200 aa17.13■□□□□ 0.33
VPS28-209ENST00000528142 MUC15Q8N387 334 aa17.13■□□□□ 0.33
VPS28-209ENST00000528142 CXorf58Q96LI9 332 aa17.13■□□□□ 0.33
VPS28-209ENST00000528142 RAB9BQ9NP90 201 aa17.13■□□□□ 0.33
VPS28-209ENST00000528142 FBXL17Q9UF56 701 aa17.13■□□□□ 0.33
VPS28-209ENST00000528142 DIDO1Q9BTC0 2240 aaKnown RBP17.13■□□□□ 0.33
VPS28-209ENST00000528142 PROP1O75360 226 aa17.12■□□□□ 0.33
VPS28-209ENST00000528142 ZNF134P52741 427 aa17.12■□□□□ 0.33
VPS28-209ENST00000528142 CATR1Q13166 79 aa17.12■□□□□ 0.33
VPS28-209ENST00000528142 BTNL3Q6UXE8 466 aa17.12■□□□□ 0.33
VPS28-209ENST00000528142 BSCL2Q96G97 398 aaPredicted RBP17.12■□□□□ 0.33
VPS28-209ENST00000528142 FAM212BQ9NTI7 297 aaPredicted RBP17.12■□□□□ 0.33
VPS28-209ENST00000528142 MED9Q9NWA0 146 aa17.12■□□□□ 0.33
VPS28-209ENST00000528142 ITGB1BP1O14713 200 aa17.12■□□□□ 0.33
VPS28-209ENST00000528142 RAMP3O60896 148 aa17.12■□□□□ 0.33
VPS28-209ENST00000528142 FCN3O75636 299 aa17.12■□□□□ 0.33
VPS28-209ENST00000528142 CLDN14O95500 239 aa17.12■□□□□ 0.33
VPS28-209ENST00000528142 CLDN1O95832 211 aa17.12■□□□□ 0.33
VPS28-209ENST00000528142 EPHA1P21709 976 aa17.12■□□□□ 0.33
VPS28-209ENST00000528142 IZUMO4Q1ZYL8 232 aa17.12■□□□□ 0.33
VPS28-209ENST00000528142 UTF1Q5T230 341 aa17.12■□□□□ 0.33
VPS28-209ENST00000528142 RPL7L1Q6DKI1 246 aaKnown RBP17.12■□□□□ 0.33
VPS28-209ENST00000528142 PDZD9Q8IXQ8 264 aa17.12■□□□□ 0.33
VPS28-209ENST00000528142 TCTEX1D1Q8N7M0 179 aa17.12■□□□□ 0.33
VPS28-209ENST00000528142 HSD17B10Q99714 261 aaKnown RBP17.12■□□□□ 0.33
VPS28-209ENST00000528142 MAGT1Q9H0U3 335 aa17.12■□□□□ 0.33
VPS28-209ENST00000528142 GFOD1Q9NXC2 390 aa17.12■□□□□ 0.33
VPS28-209ENST00000528142 ARID1AO14497 2285 aa17.11■□□□□ 0.33
VPS28-209ENST00000528142 ZNF729A6NN14 1252 aaPredicted RBP17.11■□□□□ 0.33
VPS28-209ENST00000528142 C17orf98A8MV24 154 aa17.11■□□□□ 0.33
VPS28-209ENST00000528142 MMP9P14780 707 aa17.11■□□□□ 0.33
VPS28-209ENST00000528142 Q3ZCU0 254 aa17.11■□□□□ 0.33
VPS28-209ENST00000528142 IFI27L2Q9H2X8 130 aa17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms