RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 OPN1MW3P0DN78 364 aa8.14□□□□□ -1.11
VPS28-204ENST00000526054 ZBTB25P24278 435 aa8.14□□□□□ -1.11
VPS28-204ENST00000526054 BRS3P32247 399 aa8.14□□□□□ -1.11
VPS28-204ENST00000526054 PPP1CCP36873 323 aaKnown RBP8.14□□□□□ -1.11
VPS28-204ENST00000526054 RAB7AP51149 207 aa8.14□□□□□ -1.11
VPS28-204ENST00000526054 DYNLT3P51808 116 aa8.14□□□□□ -1.11
VPS28-204ENST00000526054 TAS2R20P59543 309 aa8.14□□□□□ -1.11
VPS28-204ENST00000526054 LIAT1Q6ZQX7 453 aa8.14□□□□□ -1.11
VPS28-204ENST00000526054 SLC25A48Q6ZT89 311 aaKnown RBP8.14□□□□□ -1.11
VPS28-204ENST00000526054 IZUMO1Q8IYV9 350 aa8.14□□□□□ -1.11
VPS28-204ENST00000526054 DYNAPQ8N1N2 210 aa8.14□□□□□ -1.11
VPS28-204ENST00000526054 C11orf44Q8N8P7 122 aa8.14□□□□□ -1.11
VPS28-204ENST00000526054 ZNF439Q8NDP4 499 aa8.14□□□□□ -1.11
VPS28-204ENST00000526054 OR2AK2Q8NG84 335 aa8.14□□□□□ -1.11
VPS28-204ENST00000526054 EDARADDQ8WWZ3 215 aa8.14□□□□□ -1.11
VPS28-204ENST00000526054 S100ZQ8WXG8 99 aa8.14□□□□□ -1.11
VPS28-204ENST00000526054 NPFFR1Q9GZQ6 430 aa8.14□□□□□ -1.11
VPS28-204ENST00000526054 SLC23A1Q9UHI7 598 aa8.14□□□□□ -1.11
VPS28-204ENST00000526054 ZNF230Q9UIE0 474 aaPredicted RBP8.14□□□□□ -1.11
VPS28-204ENST00000526054 ELF5Q9UKW6 265 aaPredicted RBP8.14□□□□□ -1.11
VPS28-204ENST00000526054 LY6LH3BQJ8 138 aa8.13□□□□□ -1.11
VPS28-204ENST00000526054 CTDSP2O14595 271 aa8.13□□□□□ -1.11
VPS28-204ENST00000526054 ITGB1BP1O14713 200 aa8.13□□□□□ -1.11
VPS28-204ENST00000526054 HSD17B6O14756 317 aa8.13□□□□□ -1.11
VPS28-204ENST00000526054 SLC31A2O15432 143 aa8.13□□□□□ -1.11
VPS28-204ENST00000526054 PLXNB1O43157 2135 aa8.13□□□□□ -1.11
VPS28-204ENST00000526054 TXNL1O43396 289 aa8.13□□□□□ -1.11
VPS28-204ENST00000526054 CHST1O43916 411 aa8.13□□□□□ -1.11
VPS28-204ENST00000526054 VSIG10L2P0DP72 767 aa8.13□□□□□ -1.11
VPS28-204ENST00000526054 PAX6P26367 422 aa8.13□□□□□ -1.11
VPS28-204ENST00000526054 CBX5P45973 191 aa8.13□□□□□ -1.11
VPS28-204ENST00000526054 BEAN1Q3B7T3 259 aa8.13□□□□□ -1.11
VPS28-204ENST00000526054 CT45A1Q5HYN5 189 aa8.13□□□□□ -1.11
VPS28-204ENST00000526054 SPANXN2Q5MJ10 180 aa8.13□□□□□ -1.11
VPS28-204ENST00000526054 HIST2H2BDQ6DRA6 164 aa8.13□□□□□ -1.11
VPS28-204ENST00000526054 FAM53AQ6NSI3 398 aaPredicted RBP8.13□□□□□ -1.11
VPS28-204ENST00000526054 C5orf24Q7Z6I8 188 aa8.13□□□□□ -1.11
VPS28-204ENST00000526054 LAX1Q8IWV1 398 aa8.13□□□□□ -1.11
VPS28-204ENST00000526054 OR8H3Q8N146 312 aa8.13□□□□□ -1.11
VPS28-204ENST00000526054 LYG1Q8N1E2 194 aa8.13□□□□□ -1.11
VPS28-204ENST00000526054 CT45A3Q8NHU0 189 aa8.13□□□□□ -1.11
VPS28-204ENST00000526054 MAFIPQ8WZ33 124 aa8.13□□□□□ -1.11
VPS28-204ENST00000526054 CABLES2Q9BTV7 478 aa8.13□□□□□ -1.11
VPS28-204ENST00000526054 ST6GALNAC5Q9BVH7 336 aa8.13□□□□□ -1.11
VPS28-204ENST00000526054 PITPNC1Q9UKF7 332 aa8.13□□□□□ -1.11
VPS28-204ENST00000526054 TCF19Q9Y242 345 aa8.13□□□□□ -1.11
VPS28-204ENST00000526054 DNAH3Q8TD57 4116 aa8.13□□□□□ -1.11
VPS28-204ENST00000526054 BET1O15155 118 aa8.12□□□□□ -1.11
VPS28-204ENST00000526054 SSX5O60225 188 aa8.12□□□□□ -1.11
VPS28-204ENST00000526054 GAPDHP04406 335 aaKnown RBP8.12□□□□□ -1.11
VPS28-204ENST00000526054 CTXN2P0C2S0 81 aa8.12□□□□□ -1.11
VPS28-204ENST00000526054 GSTT2P0CG29 244 aa8.12□□□□□ -1.11
VPS28-204ENST00000526054 GSTT2BP0CG30 244 aa8.12□□□□□ -1.11
VPS28-204ENST00000526054 ELK1P19419 428 aa8.12□□□□□ -1.11
VPS28-204ENST00000526054 CEACAM6P40199 344 aa8.12□□□□□ -1.11
VPS28-204ENST00000526054 ZNF134P52741 427 aa8.12□□□□□ -1.11
VPS28-204ENST00000526054 ZNF137PP52743 207 aa8.12□□□□□ -1.11
VPS28-204ENST00000526054 ZNF816Q0VGE8 651 aaPredicted RBP8.12□□□□□ -1.11
VPS28-204ENST00000526054 ZNF846Q147U1 533 aa8.12□□□□□ -1.11
VPS28-204ENST00000526054 SAMD5Q5TGI4 173 aa8.12□□□□□ -1.11
VPS28-204ENST00000526054 DTX3Q8N9I9 347 aa8.12□□□□□ -1.11
VPS28-204ENST00000526054 OR10J5Q8NHC4 309 aa8.12□□□□□ -1.11
VPS28-204ENST00000526054 CFHR4Q92496 578 aa8.12□□□□□ -1.11
VPS28-204ENST00000526054 GINS4Q9BRT9 223 aa8.12□□□□□ -1.11
VPS28-204ENST00000526054 WDR12Q9GZL7 423 aaKnown RBP8.12□□□□□ -1.11
VPS28-204ENST00000526054 MIXL1Q9H2W2 232 aa8.12□□□□□ -1.11
VPS28-204ENST00000526054 IFT46Q9NQC8 304 aa8.12□□□□□ -1.11
VPS28-204ENST00000526054 PIPOXQ9P0Z9 390 aa8.12□□□□□ -1.11
VPS28-204ENST00000526054 OR1A1Q9P1Q5 309 aa8.12□□□□□ -1.11
VPS28-204ENST00000526054 EXTL2Q9UBQ6 330 aa8.12□□□□□ -1.11
VPS28-204ENST00000526054 MRPS7Q9Y2R9 242 aaKnown RBP8.12□□□□□ -1.11
VPS28-204ENST00000526054 TRBV6-7A0A0A0MS04 114 aa8.11□□□□□ -1.11
VPS28-204ENST00000526054 IGKV1-6A0A0C4DH72 117 aa8.11□□□□□ -1.11
VPS28-204ENST00000526054 A0A1W2PPI3 338 aa8.11□□□□□ -1.11
VPS28-204ENST00000526054 ST8SIA5O15466 376 aa8.11□□□□□ -1.11
VPS28-204ENST00000526054 LANCL1O43813 399 aa8.11□□□□□ -1.11
VPS28-204ENST00000526054 FBXO24O75426 580 aa8.11□□□□□ -1.11
VPS28-204ENST00000526054 PTHLHP12272 177 aa8.11□□□□□ -1.11
VPS28-204ENST00000526054 TNFSF8P32971 234 aa8.11□□□□□ -1.11
VPS28-204ENST00000526054 PRSS3P35030 304 aa8.11□□□□□ -1.11
VPS28-204ENST00000526054 ETV6P41212 452 aa8.11□□□□□ -1.11
VPS28-204ENST00000526054 RAB13P51153 203 aa8.11□□□□□ -1.11
VPS28-204ENST00000526054 ARPC4P59998 168 aa8.11□□□□□ -1.11
VPS28-204ENST00000526054 ZNF45Q02386 682 aa8.11□□□□□ -1.11
VPS28-204ENST00000526054 IGSF11Q5DX21 431 aa8.11□□□□□ -1.11
VPS28-204ENST00000526054 KPRPQ5T749 579 aaPredicted RBP8.11□□□□□ -1.11
VPS28-204ENST00000526054 FAM71F2Q6NXP2 309 aa8.11□□□□□ -1.11
VPS28-204ENST00000526054 CNIH2Q6PI25 160 aa8.11□□□□□ -1.11
VPS28-204ENST00000526054 MOB3BQ86TA1 216 aa8.11□□□□□ -1.11
VPS28-204ENST00000526054 CCDC190Q86UF4 302 aa8.11□□□□□ -1.11
VPS28-204ENST00000526054 HOGA1Q86XE5 327 aa8.11□□□□□ -1.11
VPS28-204ENST00000526054 TGIF2LXQ8IUE1 241 aa8.11□□□□□ -1.11
VPS28-204ENST00000526054 BEST4Q8NFU0 473 aa8.11□□□□□ -1.11
VPS28-204ENST00000526054 C15orf40Q8WUR7 153 aa8.11□□□□□ -1.11
VPS28-204ENST00000526054 ST6GALNAC6Q969X2 333 aa8.11□□□□□ -1.11
VPS28-204ENST00000526054 DIRAS2Q96HU8 199 aa8.11□□□□□ -1.11
VPS28-204ENST00000526054 TOLLIPQ9H0E2 274 aa8.11□□□□□ -1.11
VPS28-204ENST00000526054 IFI27L2Q9H2X8 130 aa8.11□□□□□ -1.11
VPS28-204ENST00000526054 GHITMQ9H3K2 345 aa8.11□□□□□ -1.11
VPS28-204ENST00000526054 AKIP1Q9NQ31 210 aa8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms