RNA–Protein interactions for RNA: ENST00000522122.1

SYNPO-205, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SYNPO, Length 5,098 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-205ENST00000522122 HIST1H2BAQ96A08 127 aa11.92□□□□□ -0.5
SYNPO-205ENST00000522122 CXorf1O96002 111 aa11.92□□□□□ -0.5
SYNPO-205ENST00000522122 HSPB1P04792 205 aaKnown RBP11.92□□□□□ -0.5
SYNPO-205ENST00000522122 HLA-DRB5Q30154 266 aa11.92□□□□□ -0.5
SYNPO-205ENST00000522122 LILRB1Q8NHL6 650 aaPredicted RBP11.92□□□□□ -0.5
SYNPO-205ENST00000522122 IGKV3D-11A0A0A0MRZ8 115 aa11.91□□□□□ -0.5
SYNPO-205ENST00000522122 HELTA6NFD8 242 aa11.91□□□□□ -0.5
SYNPO-205ENST00000522122 M0R143 59 aa11.91□□□□□ -0.5
SYNPO-205ENST00000522122 S100A4P26447 101 aaKnown RBP11.91□□□□□ -0.5
SYNPO-205ENST00000522122 DHRS11Q6UWP2 260 aa11.91□□□□□ -0.5
SYNPO-205ENST00000522122 C19orf35Q6ZS72 473 aa11.91□□□□□ -0.5
SYNPO-205ENST00000522122 ZNF383Q8NA42 475 aa11.91□□□□□ -0.5
SYNPO-205ENST00000522122 THYN1Q9P016 225 aa11.91□□□□□ -0.5
SYNPO-205ENST00000522122 CBY1Q9Y3M2 126 aa11.91□□□□□ -0.5
SYNPO-205ENST00000522122 DANCRP0C864 163 aa11.91□□□□□ -0.5
SYNPO-205ENST00000522122 TNXAQ16473 311 aa11.91□□□□□ -0.5
SYNPO-205ENST00000522122 TMEM251Q8N6I4 163 aa11.91□□□□□ -0.5
SYNPO-205ENST00000522122 SRD5A3Q9H8P0 318 aa11.91□□□□□ -0.5
SYNPO-205ENST00000522122 AURKAIP1Q9NWT8 199 aaPredicted RBP11.91□□□□□ -0.5
SYNPO-205ENST00000522122 PRR19A6NJB7 356 aa11.91□□□□□ -0.5
SYNPO-205ENST00000522122 C11orf42Q8N5U0 333 aa11.91□□□□□ -0.5
SYNPO-205ENST00000522122 ZNF665Q9H7R5 613 aa11.91□□□□□ -0.5
SYNPO-205ENST00000522122 FBLN5Q9UBX5 448 aa11.91□□□□□ -0.5
SYNPO-205ENST00000522122 DOCK6Q96HP0 2047 aa11.91□□□□□ -0.5
SYNPO-205ENST00000522122 MSGN1A6NI15 193 aa11.91□□□□□ -0.5
SYNPO-205ENST00000522122 ZNF708P17019 499 aa11.91□□□□□ -0.5
SYNPO-205ENST00000522122 CD1BP29016 333 aa11.91□□□□□ -0.5
SYNPO-205ENST00000522122 CD81P60033 236 aa11.91□□□□□ -0.5
SYNPO-205ENST00000522122 SRSF4Q08170 494 aaKnown RBP11.91□□□□□ -0.5
SYNPO-205ENST00000522122 SUCLG1P53597 346 aaKnown RBP11.9□□□□□ -0.5
SYNPO-205ENST00000522122 LYZP61626 148 aa11.9□□□□□ -0.5
SYNPO-205ENST00000522122 OR1B1Q8NGR6 318 aa11.9□□□□□ -0.5
SYNPO-205ENST00000522122 RTBDNQ9BSG5 229 aaPredicted RBP11.9□□□□□ -0.5
SYNPO-205ENST00000522122 ABHD14AQ9BUJ0 271 aa11.9□□□□□ -0.5
SYNPO-205ENST00000522122 TREM2Q9NZC2 230 aa11.9□□□□□ -0.5
SYNPO-205ENST00000522122 CYB5R3P00387 301 aaPredicted RBP11.9□□□□□ -0.5
SYNPO-205ENST00000522122 CFPP27918 469 aa11.9□□□□□ -0.5
SYNPO-205ENST00000522122 LRP11Q86VZ4 500 aa11.9□□□□□ -0.5
SYNPO-205ENST00000522122 CDX2Q99626 313 aaPredicted RBP11.9□□□□□ -0.5
SYNPO-205ENST00000522122 J3QR89 54 aa11.9□□□□□ -0.5
SYNPO-205ENST00000522122 USF1P22415 310 aaPredicted RBP11.9□□□□□ -0.5
SYNPO-205ENST00000522122 PRDX2P32119 198 aa11.9□□□□□ -0.5
SYNPO-205ENST00000522122 TPRX1Q8N7U7 411 aa11.9□□□□□ -0.5
SYNPO-205ENST00000522122 HARBI1Q96MB7 349 aa11.9□□□□□ -0.5
SYNPO-205ENST00000522122 A0A1W2PR77 199 aa11.9□□□□□ -0.51
SYNPO-205ENST00000522122 K7ESF4 209 aa11.9□□□□□ -0.51
SYNPO-205ENST00000522122 PPIHO43447 177 aaKnown RBP11.9□□□□□ -0.51
SYNPO-205ENST00000522122 PGLYRP1O75594 196 aaPredicted RBP11.9□□□□□ -0.51
SYNPO-205ENST00000522122 CEACAM3P40198 252 aa11.9□□□□□ -0.51
SYNPO-205ENST00000522122 TGIF2LYQ8IUE0 185 aa11.9□□□□□ -0.51
SYNPO-205ENST00000522122 TGIF2LXQ8IUE1 241 aa11.9□□□□□ -0.51
SYNPO-205ENST00000522122 OR5AU1Q8NGC0 362 aa11.9□□□□□ -0.51
SYNPO-205ENST00000522122 VWCEQ96DN2 955 aa11.9□□□□□ -0.51
SYNPO-205ENST00000522122 SPSB2Q99619 263 aa11.9□□□□□ -0.51
SYNPO-205ENST00000522122 RNF126Q9BV68 326 aa11.9□□□□□ -0.51
SYNPO-205ENST00000522122 SAP30LQ9HAJ7 183 aa11.9□□□□□ -0.51
SYNPO-205ENST00000522122 AMMECR1Q9Y4X0 333 aaPredicted RBP11.9□□□□□ -0.51
SYNPO-205ENST00000522122 J3QR06 171 aa11.89□□□□□ -0.51
SYNPO-205ENST00000522122 SRSF10O75494 262 aaKnown RBP11.89□□□□□ -0.51
SYNPO-205ENST00000522122 HPRT1P00492 218 aa11.89□□□□□ -0.51
SYNPO-205ENST00000522122 MEF2BQ02080 365 aaPredicted RBP11.89□□□□□ -0.51
SYNPO-205ENST00000522122 APCDD1LQ8NCL9 501 aa11.89□□□□□ -0.51
SYNPO-205ENST00000522122 OR52M1Q8NGK5 317 aa11.89□□□□□ -0.51
SYNPO-205ENST00000522122 DNASE2BQ8WZ79 361 aa11.89□□□□□ -0.51
SYNPO-205ENST00000522122 FLYWCH2Q96CP2 140 aaKnown RBP11.89□□□□□ -0.51
SYNPO-205ENST00000522122 OR51M1Q9H341 326 aa11.89□□□□□ -0.51
SYNPO-205ENST00000522122 CNOT1A5YKK6 2376 aaKnown RBP11.89□□□□□ -0.51
SYNPO-205ENST00000522122 HBZP02008 142 aa11.89□□□□□ -0.51
SYNPO-205ENST00000522122 HOXB1P14653 301 aaPredicted RBP11.89□□□□□ -0.51
SYNPO-205ENST00000522122 UCP2P55851 309 aa11.89□□□□□ -0.51
SYNPO-205ENST00000522122 NHLH1Q02575 133 aa11.89□□□□□ -0.51
SYNPO-205ENST00000522122 MRPL54Q6P161 138 aaKnown RBP11.89□□□□□ -0.51
SYNPO-205ENST00000522122 C16orf82Q7Z2V1 217 aa11.89□□□□□ -0.51
SYNPO-205ENST00000522122 NFAM1Q8NET5 270 aaPredicted RBP11.89□□□□□ -0.51
SYNPO-205ENST00000522122 SGMS2Q8NHU3 365 aa11.89□□□□□ -0.51
SYNPO-205ENST00000522122 NPVFQ9HCQ7 196 aa11.89□□□□□ -0.51
SYNPO-205ENST00000522122 EPOPA6NHQ4 379 aa11.89□□□□□ -0.51
SYNPO-205ENST00000522122 OR2H2O95918 312 aa11.89□□□□□ -0.51
SYNPO-205ENST00000522122 FAM3BP58499 235 aaPredicted RBP11.89□□□□□ -0.51
SYNPO-205ENST00000522122 COL10A1Q03692 680 aa11.89□□□□□ -0.51
SYNPO-205ENST00000522122 TMEM187Q14656 261 aa11.89□□□□□ -0.51
SYNPO-205ENST00000522122 OR4C5Q8NGB2 326 aa11.89□□□□□ -0.51
SYNPO-205ENST00000522122 OR1L8Q8NGR8 309 aa11.89□□□□□ -0.51
SYNPO-205ENST00000522122 GPR146Q96CH1 333 aa11.89□□□□□ -0.51
SYNPO-205ENST00000522122 METTL1Q9UBP6 276 aaKnown RBP11.89□□□□□ -0.51
SYNPO-205ENST00000522122 WIPI2Q9Y4P8 454 aa11.89□□□□□ -0.51
SYNPO-205ENST00000522122 SNURFLB1AK76 121 aa11.89□□□□□ -0.51
SYNPO-205ENST00000522122 ID4P47928 161 aa11.89□□□□□ -0.51
SYNPO-205ENST00000522122 FOXC1Q12948 553 aa11.89□□□□□ -0.51
SYNPO-205ENST00000522122 GAMTQ14353 236 aa11.89□□□□□ -0.51
SYNPO-205ENST00000522122 HIST3H3Q16695 136 aa11.89□□□□□ -0.51
SYNPO-205ENST00000522122 FAM166AQ6J272 317 aa11.89□□□□□ -0.51
SYNPO-205ENST00000522122 OR1L6Q8NGR2 347 aa11.89□□□□□ -0.51
SYNPO-205ENST00000522122 TEX50A0A1B0GTY4 177 aa11.88□□□□□ -0.51
SYNPO-205ENST00000522122 A0A1W2PQM1 296 aa11.88□□□□□ -0.51
SYNPO-205ENST00000522122 MGST3O14880 152 aa11.88□□□□□ -0.51
SYNPO-205ENST00000522122 LDLRAD4O15165 306 aa11.88□□□□□ -0.51
SYNPO-205ENST00000522122 ZNHIT1O43257 154 aa11.88□□□□□ -0.51
SYNPO-205ENST00000522122 MDKP21741 143 aaPredicted RBP11.88□□□□□ -0.51
SYNPO-205ENST00000522122 OR52L2PQ8NGH6 319 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 70.5 ms