RNA–Protein interactions for RNA: ENST00000519474.5

HDAC3-215, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 736 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-215ENST00000519474 ISYNA1Q9NPH2 558 aa7.44□□□□□ -1.22
HDAC3-215ENST00000519474 GFOD1Q9NXC2 390 aa7.44□□□□□ -1.22
HDAC3-215ENST00000519474 COA4Q9NYJ1 87 aa7.44□□□□□ -1.22
HDAC3-215ENST00000519474 GHRLQ9UBU3 117 aa7.44□□□□□ -1.22
HDAC3-215ENST00000519474 TRAPPC2LQ9UL33 140 aa7.44□□□□□ -1.22
HDAC3-215ENST00000519474 TRRAPQ9Y4A5 3859 aa7.44□□□□□ -1.22
HDAC3-215ENST00000519474 IGHV3-43A0A0B4J1X8 118 aa7.43□□□□□ -1.22
HDAC3-215ENST00000519474 A0A1W2PN81 502 aa7.43□□□□□ -1.22
HDAC3-215ENST00000519474 A0A1W2PPI3 338 aa7.43□□□□□ -1.22
HDAC3-215ENST00000519474 C12orf77C9JDV5 145 aa7.43□□□□□ -1.22
HDAC3-215ENST00000519474 AIPO00170 330 aa7.43□□□□□ -1.22
HDAC3-215ENST00000519474 SDCBPO00560 298 aaPredicted RBP7.43□□□□□ -1.22
HDAC3-215ENST00000519474 SLC31A2O15432 143 aa7.43□□□□□ -1.22
HDAC3-215ENST00000519474 RGS10O43665 173 aa7.43□□□□□ -1.22
HDAC3-215ENST00000519474 SPDEFO95238 335 aa7.43□□□□□ -1.22
HDAC3-215ENST00000519474 MBP02144 154 aa7.43□□□□□ -1.22
HDAC3-215ENST00000519474 GAPDHP04406 335 aaKnown RBP7.43□□□□□ -1.22
HDAC3-215ENST00000519474 IFNA4P05014 189 aa7.43□□□□□ -1.22
HDAC3-215ENST00000519474 FAM106CPP0CH98 169 aa7.43□□□□□ -1.22
HDAC3-215ENST00000519474 IGHV3-43DP0DP04 118 aa7.43□□□□□ -1.22
HDAC3-215ENST00000519474 HTR2CP28335 458 aa7.43□□□□□ -1.22
HDAC3-215ENST00000519474 CHRNA7P36544 502 aa7.43□□□□□ -1.22
HDAC3-215ENST00000519474 MAP2K4P45985 399 aa7.43□□□□□ -1.22
HDAC3-215ENST00000519474 CDKN1BP46527 198 aa7.43□□□□□ -1.22
HDAC3-215ENST00000519474 RAB7AP51149 207 aa7.43□□□□□ -1.22
HDAC3-215ENST00000519474 MECP2P51608 486 aaKnown RBP7.43□□□□□ -1.22
HDAC3-215ENST00000519474 ZNF816Q0VGE8 651 aaPredicted RBP7.43□□□□□ -1.22
HDAC3-215ENST00000519474 MADCAM1Q13477 382 aa7.43□□□□□ -1.22
HDAC3-215ENST00000519474 HNF4GQ14541 408 aa7.43□□□□□ -1.22
HDAC3-215ENST00000519474 C2orf68Q2NKX9 166 aa7.43□□□□□ -1.22
HDAC3-215ENST00000519474 NSUN5P1Q3KNT7 163 aa7.43□□□□□ -1.22
HDAC3-215ENST00000519474 CT45A1Q5HYN5 189 aa7.43□□□□□ -1.22
HDAC3-215ENST00000519474 TCTEX1D4Q5JR98 221 aa7.43□□□□□ -1.22
HDAC3-215ENST00000519474 LIPKQ5VXJ0 399 aa7.43□□□□□ -1.22
HDAC3-215ENST00000519474 GLT8D1Q68CQ7 371 aa7.43□□□□□ -1.22
HDAC3-215ENST00000519474 PRSS48Q7RTY5 328 aa7.43□□□□□ -1.22
HDAC3-215ENST00000519474 CENPVQ7Z7K6 275 aaPredicted RBP7.43□□□□□ -1.22
HDAC3-215ENST00000519474 NDUFA11Q86Y39 141 aa7.43□□□□□ -1.22
HDAC3-215ENST00000519474 C8orf31Q8N9H6 132 aa7.43□□□□□ -1.22
HDAC3-215ENST00000519474 ZNF439Q8NDP4 499 aa7.43□□□□□ -1.22
HDAC3-215ENST00000519474 OR1L1Q8NH94 360 aa7.43□□□□□ -1.22
HDAC3-215ENST00000519474 CT45A3Q8NHU0 189 aa7.43□□□□□ -1.22
HDAC3-215ENST00000519474 LRRC20Q8TCA0 184 aa7.43□□□□□ -1.22
HDAC3-215ENST00000519474 UFD1Q92890 307 aa7.43□□□□□ -1.22
HDAC3-215ENST00000519474 TOMM40LQ969M1 308 aa7.43□□□□□ -1.22
HDAC3-215ENST00000519474 GFI1Q99684 422 aa7.43□□□□□ -1.22
HDAC3-215ENST00000519474 FAAP24Q9BTP7 215 aa7.43□□□□□ -1.22
HDAC3-215ENST00000519474 TINAGL1Q9GZM7 467 aaPredicted RBP7.43□□□□□ -1.22
HDAC3-215ENST00000519474 OR51M1Q9H341 326 aa7.43□□□□□ -1.22
HDAC3-215ENST00000519474 RIMS4Q9H426 269 aaPredicted RBP7.43□□□□□ -1.22
HDAC3-215ENST00000519474 MBNL3Q9NUK0 354 aaKnown RBP7.43□□□□□ -1.22
HDAC3-215ENST00000519474 AMMECR1Q9Y4X0 333 aaPredicted RBP7.43□□□□□ -1.22
HDAC3-215ENST00000519474 TET2Q6N021 2002 aaPredicted RBP7.43□□□□□ -1.22
HDAC3-215ENST00000519474 IGHV1-3A0A0C4DH29 117 aa7.42□□□□□ -1.22
HDAC3-215ENST00000519474 MARCH11A6NNE9 402 aa7.42□□□□□ -1.22
HDAC3-215ENST00000519474 TMEM14DPA8MWL7 114 aa7.42□□□□□ -1.22
HDAC3-215ENST00000519474 PDCD6O75340 191 aa7.42□□□□□ -1.22
HDAC3-215ENST00000519474 FBXO24O75426 580 aa7.42□□□□□ -1.22
HDAC3-215ENST00000519474 CA11O75493 328 aa7.42□□□□□ -1.22
HDAC3-215ENST00000519474 MPIG6BO95866 241 aa7.42□□□□□ -1.22
HDAC3-215ENST00000519474 HBZP02008 142 aa7.42□□□□□ -1.22
HDAC3-215ENST00000519474 SMIM6P0DI80 62 aa7.42□□□□□ -1.22
HDAC3-215ENST00000519474 VDAC2P45880 294 aaPredicted RBP7.42□□□□□ -1.22
HDAC3-215ENST00000519474 CAMLGP49069 296 aa7.42□□□□□ -1.22
HDAC3-215ENST00000519474 RPS25P62851 125 aaKnown RBP7.42□□□□□ -1.22
HDAC3-215ENST00000519474 TRIM16LQ309B1 348 aa7.42□□□□□ -1.22
HDAC3-215ENST00000519474 MORN2Q502X0 79 aa7.42□□□□□ -1.22
HDAC3-215ENST00000519474 PDLIM3Q53GG5 364 aaPredicted RBP7.42□□□□□ -1.22
HDAC3-215ENST00000519474 HSD17B12Q53GQ0 312 aa7.42□□□□□ -1.22
HDAC3-215ENST00000519474 C10orf99Q6UWK7 81 aa7.42□□□□□ -1.22
HDAC3-215ENST00000519474 LINC00299Q6ZSB3 139 aa7.42□□□□□ -1.22
HDAC3-215ENST00000519474 SLC25A48Q6ZT89 311 aaKnown RBP7.42□□□□□ -1.22
HDAC3-215ENST00000519474 C1QL4Q86Z23 238 aa7.42□□□□□ -1.22
HDAC3-215ENST00000519474 OR10X1Q8NGY0 326 aa7.42□□□□□ -1.22
HDAC3-215ENST00000519474 OR56B4Q8NH76 319 aa7.42□□□□□ -1.22
HDAC3-215ENST00000519474 KCNG3Q8TAE7 436 aa7.42□□□□□ -1.22
HDAC3-215ENST00000519474 FAM46BQ96A09 425 aa7.42□□□□□ -1.22
HDAC3-215ENST00000519474 RBMXL1Q96E39 390 aaKnown RBP7.42□□□□□ -1.22
HDAC3-215ENST00000519474 AKR1E2Q96JD6 320 aa7.42□□□□□ -1.22
HDAC3-215ENST00000519474 MGLLQ99685 303 aa7.42□□□□□ -1.22
HDAC3-215ENST00000519474 SULT4A1Q9BR01 284 aa7.42□□□□□ -1.22
HDAC3-215ENST00000519474 TM2D1Q9BX74 207 aa7.42□□□□□ -1.22
HDAC3-215ENST00000519474 CCDC90BQ9GZT6 254 aa7.42□□□□□ -1.22
HDAC3-215ENST00000519474 RBM38Q9H0Z9 239 aaKnown RBP7.42□□□□□ -1.22
HDAC3-215ENST00000519474 SAV1Q9H4B6 383 aaPredicted RBP7.42□□□□□ -1.22
HDAC3-215ENST00000519474 TAF9BQ9HBM6 251 aa7.42□□□□□ -1.22
HDAC3-215ENST00000519474 AK6Q9Y3D8 172 aaKnown RBP7.42□□□□□ -1.22
HDAC3-215ENST00000519474 A0A0A6YYD4 124 aa7.41□□□□□ -1.22
HDAC3-215ENST00000519474 IGHV3-72A0A0B4J1Y9 119 aa7.41□□□□□ -1.22
HDAC3-215ENST00000519474 MFSD2BA6NFX1 497 aa7.41□□□□□ -1.22
HDAC3-215ENST00000519474 LINC01548A6NM66 108 aa7.41□□□□□ -1.22
HDAC3-215ENST00000519474 ZNF736B4DX44 427 aaPredicted RBP7.41□□□□□ -1.22
HDAC3-215ENST00000519474 M0QZK8 103 aa7.41□□□□□ -1.22
HDAC3-215ENST00000519474 TSPAN4O14817 238 aa7.41□□□□□ -1.22
HDAC3-215ENST00000519474 SPINT2O43291 252 aa7.41□□□□□ -1.22
HDAC3-215ENST00000519474 UBBP0CG47 229 aa7.41□□□□□ -1.22
HDAC3-215ENST00000519474 CHATP28329 748 aa7.41□□□□□ -1.22
HDAC3-215ENST00000519474 REG1BP48304 166 aa7.41□□□□□ -1.22
HDAC3-215ENST00000519474 ALDH3B2P48448 385 aa7.41□□□□□ -1.22
HDAC3-215ENST00000519474 TMEM50BP56557 158 aa7.41□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms