RNA–Protein interactions for RNA: ENST00000514307.5

NUP54-214, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-214ENST00000514307 C8orf31Q8N9H6 132 aa13.18□□□□□ -0.3
NUP54-214ENST00000514307 OR2T35Q8NGX2 323 aa13.18□□□□□ -0.3
NUP54-214ENST00000514307 C2orf50Q96LR7 162 aa13.18□□□□□ -0.3
NUP54-214ENST00000514307 AGMATQ9BSE5 352 aa13.18□□□□□ -0.3
NUP54-214ENST00000514307 SSBP3Q9BWW4 388 aaPredicted RBP13.18□□□□□ -0.3
NUP54-214ENST00000514307 COL12A1Q99715 3063 aa13.17□□□□□ -0.3
NUP54-214ENST00000514307 C17orf98A8MV24 154 aa13.17□□□□□ -0.3
NUP54-214ENST00000514307 F5H0A9 414 aaPredicted RBP13.17□□□□□ -0.3
NUP54-214ENST00000514307 SIX6O95475 246 aa13.17□□□□□ -0.3
NUP54-214ENST00000514307 CDS2O95674 445 aa13.17□□□□□ -0.3
NUP54-214ENST00000514307 IGHV4-39P01824 125 aa13.17□□□□□ -0.3
NUP54-214ENST00000514307 HOXB5P09067 269 aa13.17□□□□□ -0.3
NUP54-214ENST00000514307 RPA2P15927 270 aa13.17□□□□□ -0.3
NUP54-214ENST00000514307 DNASE1P24855 282 aa13.17□□□□□ -0.3
NUP54-214ENST00000514307 UCP1P25874 307 aa13.17□□□□□ -0.3
NUP54-214ENST00000514307 PRRX1P54821 245 aa13.17□□□□□ -0.3
NUP54-214ENST00000514307 H2BFSP57053 126 aa13.17□□□□□ -0.3
NUP54-214ENST00000514307 ZNF273Q14593 569 aa13.17□□□□□ -0.3
NUP54-214ENST00000514307 C2orf68Q2NKX9 166 aa13.17□□□□□ -0.3
NUP54-214ENST00000514307 CT45A1Q5HYN5 189 aa13.17□□□□□ -0.3
NUP54-214ENST00000514307 PRAMEF5Q5TYX0 476 aa13.17□□□□□ -0.3
NUP54-214ENST00000514307 CLEC2AQ6UVW9 174 aa13.17□□□□□ -0.3
NUP54-214ENST00000514307 TCF23Q7RTU1 214 aa13.17□□□□□ -0.3
NUP54-214ENST00000514307 LY6G5BQ8NDX9 201 aa13.17□□□□□ -0.3
NUP54-214ENST00000514307 CT45A3Q8NHU0 189 aa13.17□□□□□ -0.3
NUP54-214ENST00000514307 FAM168AQ92567 244 aa13.17□□□□□ -0.3
NUP54-214ENST00000514307 MSI2Q96DH6 328 aaKnown RBP13.17□□□□□ -0.3
NUP54-214ENST00000514307 ADTRPQ96IZ2 230 aa13.17□□□□□ -0.3
NUP54-214ENST00000514307 TP53RKQ96S44 253 aa13.17□□□□□ -0.3
NUP54-214ENST00000514307 S1PR3Q99500 378 aa13.17□□□□□ -0.3
NUP54-214ENST00000514307 PIMREGQ9BSJ6 248 aa13.17□□□□□ -0.3
NUP54-214ENST00000514307 ABHD14AQ9BUJ0 271 aa13.17□□□□□ -0.3
NUP54-214ENST00000514307 NMES1Q9C002 83 aa13.17□□□□□ -0.3
NUP54-214ENST00000514307 PARP12Q9H0J9 701 aaKnown RBP13.17□□□□□ -0.3
NUP54-214ENST00000514307 ZFP57Q9NU63 452 aa13.17□□□□□ -0.3
NUP54-214ENST00000514307 SPTBN1Q01082 2364 aaKnown RBP13.17□□□□□ -0.3
NUP54-214ENST00000514307 SETXQ7Z333 2677 aaKnown RBP13.16□□□□□ -0.3
NUP54-214ENST00000514307 LRRK2Q5S007 2527 aa13.16□□□□□ -0.3
NUP54-214ENST00000514307 USP9XQ93008 2570 aaPredicted RBP13.16□□□□□ -0.3
NUP54-214ENST00000514307 ADGRG4Q8IZF6 3080 aa13.16□□□□□ -0.3
NUP54-214ENST00000514307 ARFGEF3Q5TH69 2177 aa13.16□□□□□ -0.3
NUP54-214ENST00000514307 TOR1AO14656 332 aa13.16□□□□□ -0.3
NUP54-214ENST00000514307 ST8SIA5O15466 376 aa13.16□□□□□ -0.3
NUP54-214ENST00000514307 TNFSF12O43508 249 aa13.16□□□□□ -0.3
NUP54-214ENST00000514307 IGLV2-14P01704 120 aa13.16□□□□□ -0.3
NUP54-214ENST00000514307 CCL3L1P16619 93 aa13.16□□□□□ -0.3
NUP54-214ENST00000514307 ZNF16P17020 682 aaPredicted RBP13.16□□□□□ -0.3
NUP54-214ENST00000514307 GZMKP49863 264 aa13.16□□□□□ -0.3
NUP54-214ENST00000514307 C1orf122Q6ZSJ8 110 aa13.16□□□□□ -0.3
NUP54-214ENST00000514307 SEC22AQ96IW7 307 aa13.16□□□□□ -0.3
NUP54-214ENST00000514307 C18orf12Q96KH6 178 aa13.16□□□□□ -0.3
NUP54-214ENST00000514307 SDHAF2Q9NX18 166 aa13.16□□□□□ -0.3
NUP54-214ENST00000514307 PRELID3BQ9Y3B1 194 aa13.16□□□□□ -0.3
NUP54-214ENST00000514307 SESN1Q9Y6P5 492 aa13.16□□□□□ -0.3
NUP54-214ENST00000514307 ASH1LQ9NR48 2969 aaKnown RBP13.15□□□□□ -0.3
NUP54-214ENST00000514307 FCN3O75636 299 aa13.15□□□□□ -0.3
NUP54-214ENST00000514307 KIR2DS2P43631 304 aa13.15□□□□□ -0.3
NUP54-214ENST00000514307 ZNF134P52741 427 aa13.15□□□□□ -0.3
NUP54-214ENST00000514307 DLX6P56179 175 aa13.15□□□□□ -0.3
NUP54-214ENST00000514307 TMEM268Q5VZI3 342 aa13.15□□□□□ -0.3
NUP54-214ENST00000514307 SLC25A48Q6ZT89 311 aaKnown RBP13.15□□□□□ -0.3
NUP54-214ENST00000514307 SELENOHQ8IZQ5 122 aaKnown RBP13.15□□□□□ -0.3
NUP54-214ENST00000514307 ZNF525Q8N782 197 aa13.15□□□□□ -0.3
NUP54-214ENST00000514307 OR51H1Q8NH63 302 aa13.15□□□□□ -0.3
NUP54-214ENST00000514307 TNFRSF14Q92956 283 aa13.15□□□□□ -0.3
NUP54-214ENST00000514307 RBPMSQ93062 196 aaKnown RBP13.15□□□□□ -0.3
NUP54-214ENST00000514307 ABHD14BQ96IU4 210 aa13.15□□□□□ -0.3
NUP54-214ENST00000514307 SPIN2AQ99865 258 aa13.15□□□□□ -0.3
NUP54-214ENST00000514307 SPIN2BQ9BPZ2 258 aa13.15□□□□□ -0.3
NUP54-214ENST00000514307 CACNA1DQ01668 2161 aa13.15□□□□□ -0.3
NUP54-214ENST00000514307 FLNBO75369 2602 aaKnown RBP13.15□□□□□ -0.3
NUP54-214ENST00000514307 DOPEY1Q5JWR5 2465 aa13.15□□□□□ -0.3
NUP54-214ENST00000514307 A0A087X0M5 115 aa13.14□□□□□ -0.31
NUP54-214ENST00000514307 A0A1B0GX30 115 aa13.14□□□□□ -0.31
NUP54-214ENST00000514307 M0R1W7 72 aa13.14□□□□□ -0.31
NUP54-214ENST00000514307 ADAP1O75689 374 aa13.14□□□□□ -0.31
NUP54-214ENST00000514307 RLN2P04090 185 aa13.14□□□□□ -0.31
NUP54-214ENST00000514307 IGHV1-8P0DP01 117 aa13.14□□□□□ -0.31
NUP54-214ENST00000514307 C4BPBP20851 252 aa13.14□□□□□ -0.31
NUP54-214ENST00000514307 VDAC1P21796 283 aa13.14□□□□□ -0.31
NUP54-214ENST00000514307 IL3RAP26951 378 aa13.14□□□□□ -0.31
NUP54-214ENST00000514307 PSMB6P28072 239 aa13.14□□□□□ -0.31
NUP54-214ENST00000514307 ERVFRD-1P60508 538 aa13.14□□□□□ -0.31
NUP54-214ENST00000514307 TAGLNQ01995 201 aaKnown RBP13.14□□□□□ -0.31
NUP54-214ENST00000514307 GGNBP1Q5YKI7 109 aa13.14□□□□□ -0.31
NUP54-214ENST00000514307 ZNF787Q6DD87 383 aa13.14□□□□□ -0.31
NUP54-214ENST00000514307 ABHD12Q8N2K0 398 aa13.14□□□□□ -0.31
NUP54-214ENST00000514307 LINC00311Q8N616 119 aa13.14□□□□□ -0.31
NUP54-214ENST00000514307 ZNF439Q8NDP4 499 aa13.14□□□□□ -0.31
NUP54-214ENST00000514307 OR9G1Q8NH87 305 aa13.14□□□□□ -0.31
NUP54-214ENST00000514307 THAP6Q8TBB0 222 aa13.14□□□□□ -0.31
NUP54-214ENST00000514307 TCTEX1D2Q8WW35 142 aa13.14□□□□□ -0.31
NUP54-214ENST00000514307 GSX2Q9BZM3 304 aa13.14□□□□□ -0.31
NUP54-214ENST00000514307 TMEM133Q9H2Q1 129 aa13.14□□□□□ -0.31
NUP54-214ENST00000514307 GSKIPQ9P0R6 139 aa13.14□□□□□ -0.31
NUP54-214ENST00000514307 SPTAN1Q13813 2472 aaKnown RBP13.13□□□□□ -0.31
NUP54-214ENST00000514307 ABCA4P78363 2273 aa13.13□□□□□ -0.31
NUP54-214ENST00000514307 M0R1X1 148 aa13.13□□□□□ -0.31
NUP54-214ENST00000514307 CCSO14618 274 aa13.13□□□□□ -0.31
NUP54-214ENST00000514307 FOXH1O75593 365 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms