RNA–Protein interactions for RNA: ENST00000513248.1

NUP54-212, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 531 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-212ENST00000513248 DUX4L5P0CJ88 424 aa2.79□□□□□ -1.96
NUP54-212ENST00000513248 DUX4L6P0CJ89 424 aa2.79□□□□□ -1.96
NUP54-212ENST00000513248 DUX4L7P0CJ90 424 aa2.79□□□□□ -1.96
NUP54-212ENST00000513248 PIPP12273 146 aaPredicted RBP2.79□□□□□ -1.96
NUP54-212ENST00000513248 ZNF19P17023 458 aa2.79□□□□□ -1.96
NUP54-212ENST00000513248 SLC2A5P22732 501 aa2.79□□□□□ -1.96
NUP54-212ENST00000513248 OMGP23515 440 aa2.79□□□□□ -1.96
NUP54-212ENST00000513248 GABRR1P24046 479 aa2.79□□□□□ -1.96
NUP54-212ENST00000513248 COX7A1P24310 79 aa2.79□□□□□ -1.96
NUP54-212ENST00000513248 PRDX2P32119 198 aa2.79□□□□□ -1.96
NUP54-212ENST00000513248 TGM4P49221 684 aa2.79□□□□□ -1.96
NUP54-212ENST00000513248 POU3F4P49335 361 aa2.79□□□□□ -1.96
NUP54-212ENST00000513248 ATP1B3P54709 279 aa2.79□□□□□ -1.96
NUP54-212ENST00000513248 ACTC1P68032 377 aa2.79□□□□□ -1.96
NUP54-212ENST00000513248 ACTA1P68133 377 aa2.79□□□□□ -1.96
NUP54-212ENST00000513248 ELF3P78545 371 aaPredicted RBP2.79□□□□□ -1.96
NUP54-212ENST00000513248 PRB3Q04118 309 aaPredicted RBP2.79□□□□□ -1.96
NUP54-212ENST00000513248 DYNC1I2Q13409 638 aaKnown RBP2.79□□□□□ -1.96
NUP54-212ENST00000513248 TMED1Q13445 227 aa2.79□□□□□ -1.96
NUP54-212ENST00000513248 MED21Q13503 144 aa2.79□□□□□ -1.96
NUP54-212ENST00000513248 EDDM3AQ14507 147 aa2.79□□□□□ -1.96
NUP54-212ENST00000513248 SLC9A3R2Q15599 337 aa2.79□□□□□ -1.96
NUP54-212ENST00000513248 TP53I3Q53FA7 332 aa2.79□□□□□ -1.96
NUP54-212ENST00000513248 KLF17Q5JT82 389 aaPredicted RBP2.79□□□□□ -1.96
NUP54-212ENST00000513248 ZNF506Q5JVG8 444 aa2.79□□□□□ -1.96
NUP54-212ENST00000513248 TMEM244Q5VVB8 128 aa2.79□□□□□ -1.96
NUP54-212ENST00000513248 MEDAGQ5VYS4 303 aa2.79□□□□□ -1.96
NUP54-212ENST00000513248 TEX36Q5VZQ5 186 aa2.79□□□□□ -1.96
NUP54-212ENST00000513248 NCR3LG1Q68D85 454 aa2.79□□□□□ -1.96
NUP54-212ENST00000513248 KDM4DQ6B0I6 523 aa2.79□□□□□ -1.96
NUP54-212ENST00000513248 DUX4L9Q6RFH8 374 aaPredicted RBP2.79□□□□□ -1.96
NUP54-212ENST00000513248 GDPD3Q7L5L3 318 aa2.79□□□□□ -1.96
NUP54-212ENST00000513248 CEACAM19Q7Z692 300 aa2.79□□□□□ -1.96
NUP54-212ENST00000513248 TRAPPC6BQ86SZ2 158 aa2.79□□□□□ -1.96
NUP54-212ENST00000513248 WDR86Q86TI4 376 aa2.79□□□□□ -1.96
NUP54-212ENST00000513248 SLC25A42Q86VD7 318 aa2.79□□□□□ -1.96
NUP54-212ENST00000513248 ANGPTL5Q86XS5 388 aa2.79□□□□□ -1.96
NUP54-212ENST00000513248 EGFL6Q8IUX8 553 aa2.79□□□□□ -1.96
NUP54-212ENST00000513248 MKXQ8IYA7 352 aa2.79□□□□□ -1.96
NUP54-212ENST00000513248 ELMOD2Q8IZ81 293 aa2.79□□□□□ -1.96
NUP54-212ENST00000513248 ZNF676Q8N7Q3 588 aa2.79□□□□□ -1.96
NUP54-212ENST00000513248 ZNF491Q8N8L2 437 aa2.79□□□□□ -1.96
NUP54-212ENST00000513248 ZDHHC22Q8N966 263 aa2.79□□□□□ -1.96
NUP54-212ENST00000513248 OR4M1Q8NGD0 313 aa2.79□□□□□ -1.96
NUP54-212ENST00000513248 OR8J1Q8NGP2 316 aa2.79□□□□□ -1.96
NUP54-212ENST00000513248 OR2T27Q8NH04 317 aa2.79□□□□□ -1.96
NUP54-212ENST00000513248 SGMS2Q8NHU3 365 aa2.79□□□□□ -1.96
NUP54-212ENST00000513248 TSEN15Q8WW01 171 aaKnown RBP2.79□□□□□ -1.96
NUP54-212ENST00000513248 CAPSLQ8WWF8 208 aa2.79□□□□□ -1.96
NUP54-212ENST00000513248 EMG1Q92979 244 aaKnown RBP2.79□□□□□ -1.96
NUP54-212ENST00000513248 ITFG2Q969R8 447 aa2.79□□□□□ -1.96
NUP54-212ENST00000513248 C12orf43Q96C57 262 aaKnown RBP2.79□□□□□ -1.96
NUP54-212ENST00000513248 DUS3LQ96G46 650 aaKnown RBP2.79□□□□□ -1.96
NUP54-212ENST00000513248 ZNF488Q96MN9 340 aa2.79□□□□□ -1.96
NUP54-212ENST00000513248 Q96MT0 163 aa2.79□□□□□ -1.96
NUP54-212ENST00000513248 GPER1Q99527 375 aa2.79□□□□□ -1.96
NUP54-212ENST00000513248 C9orf16Q9BUW7 83 aa2.79□□□□□ -1.96
NUP54-212ENST00000513248 OSBPL10Q9BXB5 764 aa2.79□□□□□ -1.96
NUP54-212ENST00000513248 COMMD4Q9H0A8 199 aa2.79□□□□□ -1.96
NUP54-212ENST00000513248 GABARAPL1Q9H0R8 117 aa2.79□□□□□ -1.96
NUP54-212ENST00000513248 DNTTIP1Q9H147 329 aa2.79□□□□□ -1.96
NUP54-212ENST00000513248 OR51I2Q9H344 312 aa2.79□□□□□ -1.96
NUP54-212ENST00000513248 ELL3Q9HB65 397 aaPredicted RBP2.79□□□□□ -1.96
NUP54-212ENST00000513248 ADGRL4Q9HBW9 690 aa2.79□□□□□ -1.96
NUP54-212ENST00000513248 ESM1Q9NQ30 184 aa2.79□□□□□ -1.96
NUP54-212ENST00000513248 ABCB10Q9NRK6 738 aa2.79□□□□□ -1.96
NUP54-212ENST00000513248 FAM212BQ9NTI7 297 aaPredicted RBP2.79□□□□□ -1.96
NUP54-212ENST00000513248 CLEC5AQ9NY25 188 aa2.79□□□□□ -1.96
NUP54-212ENST00000513248 RASL12Q9NYN1 266 aa2.79□□□□□ -1.96
NUP54-212ENST00000513248 DUX4Q9UBX2 424 aa2.79□□□□□ -1.96
NUP54-212ENST00000513248 NUFIP1Q9UHK0 495 aaKnown RBP2.79□□□□□ -1.96
NUP54-212ENST00000513248 RPUSD1Q9UJJ7 312 aaKnown RBP2.79□□□□□ -1.96
NUP54-212ENST00000513248 SLC22A13Q9Y226 551 aa2.79□□□□□ -1.96
NUP54-212ENST00000513248 SOX21Q9Y651 276 aaPredicted RBP2.79□□□□□ -1.96
NUP54-212ENST00000513248 KPTNQ9Y664 436 aa2.79□□□□□ -1.96
NUP54-212ENST00000513248 PRR14LQ5THK1 2151 aa2.78□□□□□ -1.96
NUP54-212ENST00000513248 ROS1P08922 2347 aa2.78□□□□□ -1.96
NUP54-212ENST00000513248 A0A1B0GUS0 222 aa2.78□□□□□ -1.96
NUP54-212ENST00000513248 LOC107986453A0A1B0GWG9 222 aa2.78□□□□□ -1.96
NUP54-212ENST00000513248 FUOMA2VDF0 154 aa2.78□□□□□ -1.96
NUP54-212ENST00000513248 M0R1W7 72 aa2.78□□□□□ -1.96
NUP54-212ENST00000513248 DLGAP1O14490 977 aa2.78□□□□□ -1.96
NUP54-212ENST00000513248 SYNGR1O43759 233 aa2.78□□□□□ -1.96
NUP54-212ENST00000513248 MPZL2O60487 215 aa2.78□□□□□ -1.96
NUP54-212ENST00000513248 ENTPD6O75354 484 aa2.78□□□□□ -1.96
NUP54-212ENST00000513248 PTBP3O95758 552 aaKnown RBP2.78□□□□□ -1.96
NUP54-212ENST00000513248 FADS2O95864 444 aaKnown RBP2.78□□□□□ -1.96
NUP54-212ENST00000513248 LHBP01229 141 aa2.78□□□□□ -1.96
NUP54-212ENST00000513248 TTRP02766 147 aa2.78□□□□□ -1.96
NUP54-212ENST00000513248 KRTAP1-4P0C5Y4 121 aa2.78□□□□□ -1.96
NUP54-212ENST00000513248 CALCBP10092 127 aa2.78□□□□□ -1.96
NUP54-212ENST00000513248 PSG2P11465 335 aa2.78□□□□□ -1.96
NUP54-212ENST00000513248 ZNF44P15621 663 aa2.78□□□□□ -1.96
NUP54-212ENST00000513248 MYL12AP19105 171 aa2.78□□□□□ -1.96
NUP54-212ENST00000513248 MDKP21741 143 aaPredicted RBP2.78□□□□□ -1.96
NUP54-212ENST00000513248 PRKACBP22694 351 aa2.78□□□□□ -1.96
NUP54-212ENST00000513248 POLR2IP36954 125 aaKnown RBP2.78□□□□□ -1.96
NUP54-212ENST00000513248 CEBPDP49716 269 aaPredicted RBP2.78□□□□□ -1.96
NUP54-212ENST00000513248 RBP2P50120 134 aa2.78□□□□□ -1.96
NUP54-212ENST00000513248 GBX2P52951 348 aaPredicted RBP2.78□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms