RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 TIMM10BQ9Y5J6 103 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 BCL9LQ86UU0 1499 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 PLXND1Q9Y4D7 1925 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 USP6P35125 1406 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 MADDQ8WXG6 1647 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 ARHGEF5Q12774 1597 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 CDC42BPGQ6DT37 1551 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 ANKRD36CQ5JPF3 1778 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 SCN11AQ9UI33 1791 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 ZFYVE16Q7Z3T8 1539 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 TOPBP1Q92547 1522 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 SIGLEC1Q9BZZ2 1709 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 OTOGLQ3ZCN5 2332 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 CCDC88AQ3V6T2 1871 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 CUL7Q14999 1698 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 C1orf167Q5SNV9 1468 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 A0A0G2JN53 185 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 A0A0J9YY10 115 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 A0A1B0GX78 115 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 TCRBV3S1A0A5B6 114 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 OR5B21A6NL26 309 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 ZNF705EA8MWA4 302 aaPredicted RBP1.31□□□□□ -2.2
NUP54-208ENST00000508604 F5H768 121 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 INMT-MINDY4F8WBC2 141 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 DCTN6O00399 190 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 DEGS1O15121 323 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 FGF16O43320 207 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 HCRTR1O43613 425 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 ENTPD6O75354 484 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 HSBP1O75506 76 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 FCN3O75636 299 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 NDUFA7O95182 113 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 FARS2O95363 451 aaKnown RBP1.31□□□□□ -2.2
NUP54-208ENST00000508604 JCHAINP01591 159 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 CA3P07451 260 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 CTSLP07711 333 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 CD14P08571 375 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 SULT1A3P0DMM9 295 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 SULT1A4P0DMN0 295 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 LIPCP11150 499 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 ATP6V0CP27449 155 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 HTR1DP28221 377 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 ADORA2BP29275 332 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 MIPP30301 263 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 TGFBR1P36897 503 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 POLR2IP36954 125 aaKnown RBP1.31□□□□□ -2.2
NUP54-208ENST00000508604 GABRA2P47869 451 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 RPL29P47914 159 aaKnown RBP1.31□□□□□ -2.2
NUP54-208ENST00000508604 PRLHRP49683 370 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 GNG4P50150 75 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 AKR1C2P52895 323 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 OR12D2P58182 307 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 TAS2R30P59541 319 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 RHOBP62745 196 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 UBA52P62987 128 aaKnown RBP1.31□□□□□ -2.2
NUP54-208ENST00000508604 MRPS6P82932 125 aaKnown RBP1.31□□□□□ -2.2
NUP54-208ENST00000508604 FABP5Q01469 135 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 C2orf80Q0P641 193 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 PRDX4Q13162 271 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 CLINT1Q14677 625 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 OR1Q1Q15612 314 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 UBE2V2Q15819 145 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 GABRA6Q16445 453 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 CDKN3Q16667 212 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 TTLL9Q3SXZ7 439 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 KHDC3LQ587J8 217 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 COA6Q5JTJ3 125 aaKnown RBP1.31□□□□□ -2.2
NUP54-208ENST00000508604 FAM120AOSQ5T036 256 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 TPTE2P1Q5T6R2 138 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 TMEM236Q5W0B7 351 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 ZFAND6Q6FIF0 208 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 C22orf42Q6IC83 251 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 DNAJC24Q6P3W2 148 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 LEG1Q6P5S2 330 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 KCNIP4Q6PIL6 250 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 SLC25A34Q6PIV7 304 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 TBPL2Q6SJ96 375 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 ALKAL1Q6UXT8 129 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 ZNF621Q6ZSS3 439 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 GTF2H5Q6ZYL4 71 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 SLC35E3Q7Z769 313 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 PPP1R27Q86WC6 154 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 CALHM3Q86XJ0 350 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 APRG1Q8IVJ8 170 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 UBALD2Q8IYN6 164 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 CA13Q8N1Q1 262 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 PNKDQ8N490 385 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 ZNF676Q8N7Q3 588 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 OR4F6Q8NGB9 312 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 OR4A4PQ8NGN8 299 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 OR1L4Q8NGR5 311 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 OR2Y1Q8NGV0 311 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 OR6K2Q8NGY2 324 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 OR56B4Q8NH76 319 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 OR13C6PQ8NH95 151 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 SYNPRQ8TBG9 265 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 DOK4Q8TEW6 326 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 ZNF418Q8TF45 676 aaPredicted RBP1.31□□□□□ -2.2
NUP54-208ENST00000508604 Q8WTZ3 238 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 EEF1AKMT1Q8WVE0 214 aa1.31□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms