RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 PLEKHA1Q9HB21 404 aa3□□□□□ -1.93
USP54-217ENST00000498213 SCPEP1Q9HB40 452 aa3□□□□□ -1.93
USP54-217ENST00000498213 SLC25A19Q9HC21 320 aa3□□□□□ -1.93
USP54-217ENST00000498213 PTTG2Q9NZH5 202 aa3□□□□□ -1.93
USP54-217ENST00000498213 ERGIC3Q9Y282 383 aa3□□□□□ -1.93
USP54-217ENST00000498213 ZNF256Q9Y2P7 627 aaPredicted RBP3□□□□□ -1.93
USP54-217ENST00000498213 MRPS28Q9Y2Q9 187 aaKnown RBP3□□□□□ -1.93
USP54-217ENST00000498213 LRRC42Q9Y546 428 aa3□□□□□ -1.93
USP54-217ENST00000498213 R4GMQ9 66 aa3□□□□□ -1.93
USP54-217ENST00000498213 RNF213Q63HN8 5207 aa3□□□□□ -1.93
USP54-217ENST00000498213 DNAH17Q9UFH2 4485 aa3□□□□□ -1.93
USP54-217ENST00000498213 KBTBD11-OT1A0A1B0GTJ5 212 aa2.99□□□□□ -1.93
USP54-217ENST00000498213 A0A1W2PP11 408 aa2.99□□□□□ -1.93
USP54-217ENST00000498213 TVP23AA6NH52 213 aa2.99□□□□□ -1.93
USP54-217ENST00000498213 LOC110117498-PIK3R3F6TDL0 507 aa2.99□□□□□ -1.93
USP54-217ENST00000498213 CCL24O00175 119 aa2.99□□□□□ -1.93
USP54-217ENST00000498213 ZNF780AO75290 641 aaPredicted RBP2.99□□□□□ -1.93
USP54-217ENST00000498213 BRI3O95415 125 aa2.99□□□□□ -1.93
USP54-217ENST00000498213 HAND1O96004 215 aa2.99□□□□□ -1.93
USP54-217ENST00000498213 IGHG4P01861 327 aa2.99□□□□□ -1.93
USP54-217ENST00000498213 GAPDHP04406 335 aaKnown RBP2.99□□□□□ -1.93
USP54-217ENST00000498213 KRT8P05787 483 aa2.99□□□□□ -1.93
USP54-217ENST00000498213 GNAO1P09471 354 aa2.99□□□□□ -1.93
USP54-217ENST00000498213 OR2T7P0C7T2 308 aa2.99□□□□□ -1.93
USP54-217ENST00000498213 DUX4L4P0CJ87 422 aa2.99□□□□□ -1.93
USP54-217ENST00000498213 PRKACGP22612 351 aa2.99□□□□□ -1.93
USP54-217ENST00000498213 SLC2A5P22732 501 aa2.99□□□□□ -1.93
USP54-217ENST00000498213 FASP25445 335 aa2.99□□□□□ -1.93
USP54-217ENST00000498213 IL3RAP26951 378 aa2.99□□□□□ -1.93
USP54-217ENST00000498213 CD1BP29016 333 aa2.99□□□□□ -1.93
USP54-217ENST00000498213 PYCR1P32322 319 aa2.99□□□□□ -1.93
USP54-217ENST00000498213 POLR2IP36954 125 aaKnown RBP2.99□□□□□ -1.93
USP54-217ENST00000498213 RANBP1P43487 201 aa2.99□□□□□ -1.93
USP54-217ENST00000498213 MAP2K4P45985 399 aa2.99□□□□□ -1.93
USP54-217ENST00000498213 CCR9P51686 369 aa2.99□□□□□ -1.93
USP54-217ENST00000498213 ZNF137PP52743 207 aa2.99□□□□□ -1.93
USP54-217ENST00000498213 ATP1B3P54709 279 aa2.99□□□□□ -1.93
USP54-217ENST00000498213 EDDM3BP56851 147 aa2.99□□□□□ -1.93
USP54-217ENST00000498213 BLCAPP62952 87 aa2.99□□□□□ -1.93
USP54-217ENST00000498213 KLRD1Q13241 179 aa2.99□□□□□ -1.93
USP54-217ENST00000498213 DYNC1I2Q13409 638 aaKnown RBP2.99□□□□□ -1.93
USP54-217ENST00000498213 ZNF273Q14593 569 aa2.99□□□□□ -1.93
USP54-217ENST00000498213 SSX1Q16384 188 aa2.99□□□□□ -1.93
USP54-217ENST00000498213 NHLRC3Q5JS37 347 aa2.99□□□□□ -1.93
USP54-217ENST00000498213 LY6G6FQ5SQ64 297 aa2.99□□□□□ -1.93
USP54-217ENST00000498213 TPTE2P1Q5T6R2 138 aa2.99□□□□□ -1.93
USP54-217ENST00000498213 BCL2L15Q5TBC7 163 aa2.99□□□□□ -1.93
USP54-217ENST00000498213 TMEM244Q5VVB8 128 aa2.99□□□□□ -1.93
USP54-217ENST00000498213 ELP2Q6IA86 826 aa2.99□□□□□ -1.93
USP54-217ENST00000498213 LAIR2Q6ISS4 152 aa2.99□□□□□ -1.93
USP54-217ENST00000498213 TRAT1Q6PIZ9 186 aa2.99□□□□□ -1.93
USP54-217ENST00000498213 ZNF497Q6ZNH5 498 aa2.99□□□□□ -1.93
USP54-217ENST00000498213 PLEKHG7Q6ZR37 379 aa2.99□□□□□ -1.93
USP54-217ENST00000498213 COMMD2Q86X83 199 aa2.99□□□□□ -1.93
USP54-217ENST00000498213 ANGPTL5Q86XS5 388 aa2.99□□□□□ -1.93
USP54-217ENST00000498213 STPG2Q8N412 459 aa2.99□□□□□ -1.93
USP54-217ENST00000498213 C5orf56Q8N8D9 126 aa2.99□□□□□ -1.93
USP54-217ENST00000498213 ASCC1Q8N9N2 400 aaKnown RBP2.99□□□□□ -1.93
USP54-217ENST00000498213 AQP11Q8NBQ7 271 aa2.99□□□□□ -1.93
USP54-217ENST00000498213 OR10G2Q8NGC3 310 aa2.99□□□□□ -1.93
USP54-217ENST00000498213 OR6Q1Q8NGQ2 317 aa2.99□□□□□ -1.93
USP54-217ENST00000498213 OR2T10Q8NGZ9 312 aa2.99□□□□□ -1.93
USP54-217ENST00000498213 MYOZ3Q8TDC0 251 aa2.99□□□□□ -1.93
USP54-217ENST00000498213 THEM6Q8WUY1 208 aa2.99□□□□□ -1.93
USP54-217ENST00000498213 TRUB1Q8WWH5 349 aaKnown RBP2.99□□□□□ -1.93
USP54-217ENST00000498213 FCAMRQ8WWV6 532 aa2.99□□□□□ -1.93
USP54-217ENST00000498213 BORCS8Q96FH0 119 aa2.99□□□□□ -1.93
USP54-217ENST00000498213 CNN2Q99439 309 aaKnown RBP2.99□□□□□ -1.93
USP54-217ENST00000498213 ZNF184Q99676 751 aaPredicted RBP2.99□□□□□ -1.93
USP54-217ENST00000498213 ZNF649Q9BS31 505 aa2.99□□□□□ -1.93
USP54-217ENST00000498213 GABARAPL1Q9H0R8 117 aa2.99□□□□□ -1.93
USP54-217ENST00000498213 ABCG5Q9H222 651 aa2.99□□□□□ -1.93
USP54-217ENST00000498213 OR51J1Q9H342 316 aa2.99□□□□□ -1.93
USP54-217ENST00000498213 EGLN3Q9H6Z9 239 aa2.99□□□□□ -1.93
USP54-217ENST00000498213 SPACA1Q9HBV2 294 aa2.99□□□□□ -1.93
USP54-217ENST00000498213 GPR84Q9NQS5 396 aa2.99□□□□□ -1.93
USP54-217ENST00000498213 PAK1IP1Q9NWT1 392 aaPredicted RBP2.99□□□□□ -1.93
USP54-217ENST00000498213 CLN6Q9NWW5 311 aa2.99□□□□□ -1.93
USP54-217ENST00000498213 ZNF319Q9P2F9 582 aa2.99□□□□□ -1.93
USP54-217ENST00000498213 WARS2Q9UGM6 360 aaKnown RBP2.99□□□□□ -1.93
USP54-217ENST00000498213 RNF150Q9ULK6 438 aa2.99□□□□□ -1.93
USP54-217ENST00000498213 COPS3Q9UNS2 423 aa2.99□□□□□ -1.93
USP54-217ENST00000498213 PIGLQ9Y2B2 252 aa2.99□□□□□ -1.93
USP54-217ENST00000498213 SAMHD1Q9Y3Z3 626 aaKnown RBP2.99□□□□□ -1.93
USP54-217ENST00000498213 U3KQV3 271 aa2.99□□□□□ -1.93
USP54-217ENST00000498213 PKD1P98161 4303 aa2.99□□□□□ -1.93
USP54-217ENST00000498213 SORL1Q92673 2214 aa2.99□□□□□ -1.93
USP54-217ENST00000498213 ODAMA1E959 279 aa2.98□□□□□ -1.93
USP54-217ENST00000498213 SERPINE3A8MV23 424 aa2.98□□□□□ -1.93
USP54-217ENST00000498213 ZNF670-ZNF695F2Z2N8 137 aa2.98□□□□□ -1.93
USP54-217ENST00000498213 H3BN98 237 aa2.98□□□□□ -1.93
USP54-217ENST00000498213 H3BUA1 57 aa2.98□□□□□ -1.93
USP54-217ENST00000498213 J3KRW8 73 aa2.98□□□□□ -1.93
USP54-217ENST00000498213 MAGEB3O15480 346 aa2.98□□□□□ -1.93
USP54-217ENST00000498213 SYT7O43581 403 aa2.98□□□□□ -1.93
USP54-217ENST00000498213 ORC5O43913 435 aa2.98□□□□□ -1.93
USP54-217ENST00000498213 SRSF10O75494 262 aaKnown RBP2.98□□□□□ -1.93
USP54-217ENST00000498213 CST1P01037 141 aa2.98□□□□□ -1.93
USP54-217ENST00000498213 TTRP02766 147 aa2.98□□□□□ -1.93
USP54-217ENST00000498213 IFNA6P05013 189 aa2.98□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms