RNA–Protein interactions for RNA: ENST00000490924.1

VPS41-214, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-214ENST00000490924 PIGCQ92535 297 aa4.93□□□□□ -1.62
VPS41-214ENST00000490924 RAB24Q969Q5 203 aa4.93□□□□□ -1.62
VPS41-214ENST00000490924 GMPPAQ96IJ6 420 aaPredicted RBP4.93□□□□□ -1.62
VPS41-214ENST00000490924 POM121L2Q96KW2 1035 aa4.93□□□□□ -1.62
VPS41-214ENST00000490924 NOL4LQ96MY1 436 aaPredicted RBP4.93□□□□□ -1.62
VPS41-214ENST00000490924 FAM173AQ9BQD7 235 aa4.93□□□□□ -1.62
VPS41-214ENST00000490924 ACTR3CQ9C0K3 210 aaPredicted RBP4.93□□□□□ -1.62
VPS41-214ENST00000490924 WDR61Q9GZS3 305 aaKnown RBP4.93□□□□□ -1.62
VPS41-214ENST00000490924 UBE2ZQ9H832 354 aaPredicted RBP4.93□□□□□ -1.62
VPS41-214ENST00000490924 KCNIP1Q9NZI2 227 aa4.93□□□□□ -1.62
VPS41-214ENST00000490924 HSPB7Q9UBY9 170 aa4.93□□□□□ -1.62
VPS41-214ENST00000490924 PILRBQ9UKJ0 227 aa4.93□□□□□ -1.62
VPS41-214ENST00000490924 LIPGQ9Y5X9 500 aa4.93□□□□□ -1.62
VPS41-214ENST00000490924 UNC13CQ8NB66 2214 aa4.93□□□□□ -1.62
VPS41-214ENST00000490924 ASXL3Q9C0F0 2248 aa4.92□□□□□ -1.62
VPS41-214ENST00000490924 IGKV1D-13A0A0B4J2D9 117 aa4.92□□□□□ -1.62
VPS41-214ENST00000490924 IGKV1-6A0A0C4DH72 117 aa4.92□□□□□ -1.62
VPS41-214ENST00000490924 CTXND1A0A1B0GTU2 59 aa4.92□□□□□ -1.62
VPS41-214ENST00000490924 TMEM210A6NLX4 147 aa4.92□□□□□ -1.62
VPS41-214ENST00000490924 IFITM10A6NMD0 228 aa4.92□□□□□ -1.62
VPS41-214ENST00000490924 ANKRD30BLA7E2S9 258 aa4.92□□□□□ -1.62
VPS41-214ENST00000490924 CD300LBA8K4G0 201 aa4.92□□□□□ -1.62
VPS41-214ENST00000490924 CXCL13O43927 109 aa4.92□□□□□ -1.62
VPS41-214ENST00000490924 MPDU1O75352 247 aa4.92□□□□□ -1.62
VPS41-214ENST00000490924 KBTBD11O94819 623 aa4.92□□□□□ -1.62
VPS41-214ENST00000490924 GCGP01275 180 aa4.92□□□□□ -1.62
VPS41-214ENST00000490924 HLA-HP01893 362 aa4.92□□□□□ -1.62
VPS41-214ENST00000490924 ADH4P08319 380 aa4.92□□□□□ -1.62
VPS41-214ENST00000490924 IGKV1-13P0DP09 117 aa4.92□□□□□ -1.62
VPS41-214ENST00000490924 SELEP16581 610 aa4.92□□□□□ -1.62
VPS41-214ENST00000490924 BCL3P20749 454 aa4.92□□□□□ -1.62
VPS41-214ENST00000490924 ITGA3P26006 1051 aa4.92□□□□□ -1.62
VPS41-214ENST00000490924 SRP14P37108 136 aaKnown RBP4.92□□□□□ -1.62
VPS41-214ENST00000490924 MPLP40238 635 aa4.92□□□□□ -1.62
VPS41-214ENST00000490924 HAAOP46952 286 aa4.92□□□□□ -1.62
VPS41-214ENST00000490924 PSMB3P49720 205 aa4.92□□□□□ -1.62
VPS41-214ENST00000490924 OR2B8PP59922 312 aa4.92□□□□□ -1.62
VPS41-214ENST00000490924 ERVK11-1P61568 191 aa4.92□□□□□ -1.62
VPS41-214ENST00000490924 CCL20P78556 96 aa4.92□□□□□ -1.62
VPS41-214ENST00000490924 DEFA6Q01524 100 aa4.92□□□□□ -1.62
VPS41-214ENST00000490924 MEF2BQ02080 365 aaPredicted RBP4.92□□□□□ -1.62
VPS41-214ENST00000490924 IGFBP7Q16270 282 aa4.92□□□□□ -1.62
VPS41-214ENST00000490924 ZNF674Q2M3X9 581 aa4.92□□□□□ -1.62
VPS41-214ENST00000490924 PDLIM3Q53GG5 364 aaPredicted RBP4.92□□□□□ -1.62
VPS41-214ENST00000490924 OR2B11Q5JQS5 317 aa4.92□□□□□ -1.62
VPS41-214ENST00000490924 ACER2Q5QJU3 275 aa4.92□□□□□ -1.62
VPS41-214ENST00000490924 WDR25Q64LD2 544 aaPredicted RBP4.92□□□□□ -1.62
VPS41-214ENST00000490924 FIP1L1Q6UN15 594 aaKnown RBP4.92□□□□□ -1.62
VPS41-214ENST00000490924 ZNF497Q6ZNH5 498 aa4.92□□□□□ -1.62
VPS41-214ENST00000490924 SSX9Q7RTT3 188 aa4.92□□□□□ -1.62
VPS41-214ENST00000490924 FAM58AQ8N1B3 248 aa4.92□□□□□ -1.62
VPS41-214ENST00000490924 Q8N1Y9 231 aa4.92□□□□□ -1.62
VPS41-214ENST00000490924 DEFB119Q8N690 84 aa4.92□□□□□ -1.62
VPS41-214ENST00000490924 AKR7LQ8NHP1 331 aa4.92□□□□□ -1.62
VPS41-214ENST00000490924 IFI44Q8TCB0 444 aa4.92□□□□□ -1.62
VPS41-214ENST00000490924 TAF15Q92804 592 aaKnown RBP eCLIP4.92□□□□□ -1.62
VPS41-214ENST00000490924 GPR146Q96CH1 333 aa4.92□□□□□ -1.62
VPS41-214ENST00000490924 PACRGQ96M98 296 aaPredicted RBP4.92□□□□□ -1.62
VPS41-214ENST00000490924 ALKBH3Q96Q83 286 aaPredicted RBP4.92□□□□□ -1.62
VPS41-214ENST00000490924 RARRES2Q99969 163 aa4.92□□□□□ -1.62
VPS41-214ENST00000490924 TMEM204Q9BSN7 226 aa4.92□□□□□ -1.62
VPS41-214ENST00000490924 DDA1Q9BW61 102 aa4.92□□□□□ -1.62
VPS41-214ENST00000490924 OR51I2Q9H344 312 aa4.92□□□□□ -1.62
VPS41-214ENST00000490924 PRDM13Q9H4Q3 707 aa4.92□□□□□ -1.62
VPS41-214ENST00000490924 TMEM9BQ9NQ34 198 aa4.92□□□□□ -1.62
VPS41-214ENST00000490924 KCNIP2Q9NS61 270 aa4.92□□□□□ -1.62
VPS41-214ENST00000490924 RPRMQ9NS64 109 aa4.92□□□□□ -1.62
VPS41-214ENST00000490924 UFSP2Q9NUQ7 469 aa4.92□□□□□ -1.62
VPS41-214ENST00000490924 MTCH1Q9NZJ7 389 aa4.92□□□□□ -1.62
VPS41-214ENST00000490924 ABI3Q9P2A4 366 aa4.92□□□□□ -1.62
VPS41-214ENST00000490924 OR14J1Q9UGF5 321 aa4.92□□□□□ -1.62
VPS41-214ENST00000490924 ARL2-SNX15V9GYD0 113 aa4.92□□□□□ -1.62
VPS41-214ENST00000490924 TNRC6BQ9UPQ9 1833 aaKnown RBP4.92□□□□□ -1.62
VPS41-214ENST00000490924 ASCC3Q8N3C0 2202 aaKnown RBP4.92□□□□□ -1.62
VPS41-214ENST00000490924 CABIN1Q9Y6J0 2220 aa4.91□□□□□ -1.62
VPS41-214ENST00000490924 IGHV3-15A0A0B4J1V0 119 aa4.91□□□□□ -1.62
VPS41-214ENST00000490924 TRAV24A0A0B4J272 114 aa4.91□□□□□ -1.62
VPS41-214ENST00000490924 TRAV20A0A0B4J274 112 aa4.91□□□□□ -1.62
VPS41-214ENST00000490924 C21orf140B9A014 251 aa4.91□□□□□ -1.62
VPS41-214ENST00000490924 G3V3Y1 287 aa4.91□□□□□ -1.62
VPS41-214ENST00000490924 RBFOX2O43251 390 aaKnown RBP eCLIP4.91□□□□□ -1.62
VPS41-214ENST00000490924 PDE6DO43924 150 aa4.91□□□□□ -1.62
VPS41-214ENST00000490924 GGCTO75223 188 aaKnown RBP4.91□□□□□ -1.62
VPS41-214ENST00000490924 CST7O76096 145 aa4.91□□□□□ -1.62
VPS41-214ENST00000490924 SYNGR4O95473 234 aa4.91□□□□□ -1.62
VPS41-214ENST00000490924 OPN1LWP04000 364 aa4.91□□□□□ -1.62
VPS41-214ENST00000490924 PFN1P07737 140 aaKnown RBP4.91□□□□□ -1.62
VPS41-214ENST00000490924 SCTP09683 121 aa4.91□□□□□ -1.62
VPS41-214ENST00000490924 METTL15P1P0C7V9 234 aa4.91□□□□□ -1.62
VPS41-214ENST00000490924 MDKP21741 143 aaPredicted RBP4.91□□□□□ -1.62
VPS41-214ENST00000490924 FGF7P21781 194 aa4.91□□□□□ -1.62
VPS41-214ENST00000490924 ACP1P24666 158 aa4.91□□□□□ -1.62
VPS41-214ENST00000490924 CCKARP32238 428 aa4.91□□□□□ -1.62
VPS41-214ENST00000490924 AKR1C3P42330 323 aa4.91□□□□□ -1.62
VPS41-214ENST00000490924 LHX2P50458 406 aa4.91□□□□□ -1.62
VPS41-214ENST00000490924 ATP5IP56385 69 aaPredicted RBP4.91□□□□□ -1.62
VPS41-214ENST00000490924 TMPRSS3P57727 454 aa4.91□□□□□ -1.62
VPS41-214ENST00000490924 CATR1Q13166 79 aa4.91□□□□□ -1.62
VPS41-214ENST00000490924 MRPL49Q13405 166 aaKnown RBP4.91□□□□□ -1.62
VPS41-214ENST00000490924 JOSD1Q15040 202 aaPredicted RBP4.91□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms