RNA–Protein interactions for RNA: ENST00000489180.6

NPHP4-209, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 5,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-209ENST00000489180 USP54Q70EL1 1684 aa15.22■□□□□ 0.03
NPHP4-209ENST00000489180 A6NDN8 102 aa15.22■□□□□ 0.03
NPHP4-209ENST00000489180 NPVFQ9HCQ7 196 aa15.22■□□□□ 0.03
NPHP4-209ENST00000489180 TRBV5-7A0A0A0MS05 114 aa15.22■□□□□ 0.03
NPHP4-209ENST00000489180 SPAARA0A1B0GVQ0 90 aa15.22■□□□□ 0.03
NPHP4-209ENST00000489180 FBLL1A6NHQ2 334 aaKnown RBP15.22■□□□□ 0.03
NPHP4-209ENST00000489180 CLDN18P56856 261 aa15.22■□□□□ 0.03
NPHP4-209ENST00000489180 HERVK_113P61574 105 aa15.22■□□□□ 0.03
NPHP4-209ENST00000489180 GABRA6Q16445 453 aa15.22■□□□□ 0.03
NPHP4-209ENST00000489180 OPN3Q9H1Y3 402 aaPredicted RBP15.22■□□□□ 0.03
NPHP4-209ENST00000489180 RAB29O14966 203 aa15.22■□□□□ 0.03
NPHP4-209ENST00000489180 TUBD1Q9UJT1 453 aa15.22■□□□□ 0.03
NPHP4-209ENST00000489180 M0R296 226 aa15.22■□□□□ 0.03
NPHP4-209ENST00000489180 PGLYRP1O75594 196 aaPredicted RBP15.22■□□□□ 0.03
NPHP4-209ENST00000489180 TWIST1Q15672 202 aa15.22■□□□□ 0.03
NPHP4-209ENST00000489180 ASCL5Q7RTU5 278 aa15.22■□□□□ 0.03
NPHP4-209ENST00000489180 NFAM1Q8NET5 270 aaPredicted RBP15.22■□□□□ 0.03
NPHP4-209ENST00000489180 MYOZ3Q8TDC0 251 aa15.22■□□□□ 0.03
NPHP4-209ENST00000489180 LHFPL6Q9Y693 200 aa15.22■□□□□ 0.03
NPHP4-209ENST00000489180 ROM1Q03395 351 aa15.21■□□□□ 0.03
NPHP4-209ENST00000489180 GPR146Q96CH1 333 aa15.21■□□□□ 0.03
NPHP4-209ENST00000489180 RABAC1Q9UI14 185 aa15.21■□□□□ 0.03
NPHP4-209ENST00000489180 IGHV1-45A0A0A0MS14 117 aa15.21■□□□□ 0.03
NPHP4-209ENST00000489180 SELENOHQ8IZQ5 122 aaKnown RBP15.21■□□□□ 0.03
NPHP4-209ENST00000489180 DUSP15Q9H1R2 295 aaPredicted RBP15.21■□□□□ 0.03
NPHP4-209ENST00000489180 C5orf66Q9H5L9 145 aa15.21■□□□□ 0.03
NPHP4-209ENST00000489180 DNPH1O43598 174 aa15.21■□□□□ 0.03
NPHP4-209ENST00000489180 SRP14P37108 136 aaKnown RBP15.21■□□□□ 0.03
NPHP4-209ENST00000489180 UQCRFS1P47985 274 aa15.21■□□□□ 0.03
NPHP4-209ENST00000489180 UCP2P55851 309 aa15.21■□□□□ 0.03
NPHP4-209ENST00000489180 SLC25A47Q6Q0C1 308 aa15.21■□□□□ 0.03
NPHP4-209ENST00000489180 PRR7Q8TB68 274 aa15.21■□□□□ 0.03
NPHP4-209ENST00000489180 SMRP1Q8NCR6 262 aa15.21■□□□□ 0.03
NPHP4-209ENST00000489180 FAM206AQ9NX38 181 aa15.21■□□□□ 0.03
NPHP4-209ENST00000489180 MIC13Q5XKP0 118 aa15.21■□□□□ 0.02
NPHP4-209ENST00000489180 STXBP6Q8NFX7 210 aa15.21■□□□□ 0.02
NPHP4-209ENST00000489180 C17orf51A8MQB3 221 aa15.2■□□□□ 0.02
NPHP4-209ENST00000489180 K7N7A8 449 aa15.2■□□□□ 0.02
NPHP4-209ENST00000489180 CHCHD2P9Q5T1J5 151 aaPredicted RBP15.2■□□□□ 0.02
NPHP4-209ENST00000489180 ZNF645Q8N7E2 425 aa15.2■□□□□ 0.02
NPHP4-209ENST00000489180 APOBEC4Q8WW27 367 aaKnown RBP15.2■□□□□ 0.02
NPHP4-209ENST00000489180 CEACAM18A8MTB9 384 aa15.2■□□□□ 0.02
NPHP4-209ENST00000489180 HINT1P49773 126 aaPredicted RBP15.2■□□□□ 0.02
NPHP4-209ENST00000489180 SMIM12Q96EX1 92 aa15.2■□□□□ 0.02
NPHP4-209ENST00000489180 ISG15P05161 165 aa15.2■□□□□ 0.02
NPHP4-209ENST00000489180 HCP5Q6MZN7 132 aa15.2■□□□□ 0.02
NPHP4-209ENST00000489180 WFIKKN1Q96NZ8 548 aa15.2■□□□□ 0.02
NPHP4-209ENST00000489180 HYPMO75409 117 aa15.2■□□□□ 0.02
NPHP4-209ENST00000489180 FHITP49789 147 aa15.2■□□□□ 0.02
NPHP4-209ENST00000489180 MEF2BQ02080 365 aaPredicted RBP15.2■□□□□ 0.02
NPHP4-209ENST00000489180 SPATA45Q537H7 98 aa15.2■□□□□ 0.02
NPHP4-209ENST00000489180 KRTCAP3Q53RY4 240 aa15.2■□□□□ 0.02
NPHP4-209ENST00000489180 C1orf100Q5SVJ3 147 aa15.2■□□□□ 0.02
NPHP4-209ENST00000489180 SPANXN1Q5VSR9 72 aa15.2■□□□□ 0.02
NPHP4-209ENST00000489180 CDX2Q99626 313 aaPredicted RBP15.2■□□□□ 0.02
NPHP4-209ENST00000489180 HEXA-AS1Q9H8Q6 139 aa15.2■□□□□ 0.02
NPHP4-209ENST00000489180 PPIAL4EA0A075B759 164 aa15.19■□□□□ 0.02
NPHP4-209ENST00000489180 PPIAL4DF5H284 164 aa15.19■□□□□ 0.02
NPHP4-209ENST00000489180 HSPB1P04792 205 aaKnown RBP15.19■□□□□ 0.02
NPHP4-209ENST00000489180 PPIAL4FP0DN26 164 aa15.19■□□□□ 0.02
NPHP4-209ENST00000489180 IZUMO4Q1ZYL8 232 aa15.19■□□□□ 0.02
NPHP4-209ENST00000489180 ZXDCQ2QGD7 858 aaPredicted RBP15.19■□□□□ 0.02
NPHP4-209ENST00000489180 IBA57Q5T440 356 aaKnown RBP15.19■□□□□ 0.02
NPHP4-209ENST00000489180 PPIAL4AQ9Y536 164 aa15.19■□□□□ 0.02
NPHP4-209ENST00000489180 GREM1O60565 184 aa15.19■□□□□ 0.02
NPHP4-209ENST00000489180 HOXA4Q00056 320 aaPredicted RBP15.19■□□□□ 0.02
NPHP4-209ENST00000489180 FAM209BQ5JX69 171 aa15.19■□□□□ 0.02
NPHP4-209ENST00000489180 C1RLQ9NZP8 487 aa15.19■□□□□ 0.02
NPHP4-209ENST00000489180 LOC101059948A0A1B0GTJ6 334 aa15.19■□□□□ 0.02
NPHP4-209ENST00000489180 ZIC3O60481 467 aa15.19■□□□□ 0.02
NPHP4-209ENST00000489180 COMPP49747 757 aaPredicted RBP15.19■□□□□ 0.02
NPHP4-209ENST00000489180 FXYD3Q14802 87 aa15.19■□□□□ 0.02
NPHP4-209ENST00000489180 OR2V2Q96R30 315 aa15.19■□□□□ 0.02
NPHP4-209ENST00000489180 OR2A4O95047 310 aa15.19■□□□□ 0.02
NPHP4-209ENST00000489180 RELBQ01201 579 aa15.19■□□□□ 0.02
NPHP4-209ENST00000489180 OR2A7Q96R45 310 aa15.19■□□□□ 0.02
NPHP4-209ENST00000489180 P2RX4Q99571 388 aa15.19■□□□□ 0.02
NPHP4-209ENST00000489180 SMDT1Q9H4I9 107 aa15.19■□□□□ 0.02
NPHP4-209ENST00000489180 G6PC2Q9NQR9 355 aa15.19■□□□□ 0.02
NPHP4-209ENST00000489180 HILPDAQ9Y5L2 63 aa15.19■□□□□ 0.02
NPHP4-209ENST00000489180 C16orf97H3BN30 126 aa15.18■□□□□ 0.02
NPHP4-209ENST00000489180 OR1P1Q8NH06 330 aa15.18■□□□□ 0.02
NPHP4-209ENST00000489180 TAF15Q92804 592 aaKnown RBP eCLIP15.18■□□□□ 0.02
NPHP4-209ENST00000489180 ZNF638Q14966 1978 aaKnown RBP15.18■□□□□ 0.02
NPHP4-209ENST00000489180 IGKV1D-42A0A075B6H8 117 aa15.18■□□□□ 0.02
NPHP4-209ENST00000489180 TRBV23-1A0A0A0MS06 115 aa15.18■□□□□ 0.02
NPHP4-209ENST00000489180 UNC119Q13432 240 aa15.18■□□□□ 0.02
NPHP4-209ENST00000489180 NPDC1Q9NQX5 325 aaPredicted RBP15.18■□□□□ 0.02
NPHP4-209ENST00000489180 DLX1P56177 255 aa15.18■□□□□ 0.02
NPHP4-209ENST00000489180 FGFRL1Q8N441 504 aa15.18■□□□□ 0.02
NPHP4-209ENST00000489180 ZNF714Q96N38 554 aa15.18■□□□□ 0.02
NPHP4-209ENST00000489180 AQP10Q96PS8 301 aa15.18■□□□□ 0.02
NPHP4-209ENST00000489180 DHRS7CA6NNS2 312 aa15.18■□□□□ 0.02
NPHP4-209ENST00000489180 RND3P61587 244 aa15.18■□□□□ 0.02
NPHP4-209ENST00000489180 PAFAH1B2P68402 229 aa15.18■□□□□ 0.02
NPHP4-209ENST00000489180 LINC00869P0C866 280 aa15.18■□□□□ 0.02
NPHP4-209ENST00000489180 OTX1P32242 354 aaPredicted RBP15.18■□□□□ 0.02
NPHP4-209ENST00000489180 CD81P60033 236 aa15.18■□□□□ 0.02
NPHP4-209ENST00000489180 NHLRC3Q5JS37 347 aa15.18■□□□□ 0.02
NPHP4-209ENST00000489180 CA2P00918 260 aa15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms