RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, human

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP4-213	ENST00000488520	MRPS10	P82664	201 aa	Known RBP	7.06	□□□□□ -1.28
USP4-213	ENST00000488520	SRSF7	Q16629	238 aa	Known RBP eCLIP	7.06	□□□□□ -1.28
USP4-213	ENST00000488520	PYDC2	Q56P42	97 aa		7.06	□□□□□ -1.28
USP4-213	ENST00000488520	PRAMEF5	Q5TYX0	476 aa		7.06	□□□□□ -1.28
USP4-213	ENST00000488520	PYHIN1	Q6K0P9	492 aa		7.06	□□□□□ -1.28
USP4-213	ENST00000488520	CNIH2	Q6PI25	160 aa		7.06	□□□□□ -1.28
USP4-213	ENST00000488520	ZNF782	Q6ZMW2	699 aa	Predicted RBP	7.06	□□□□□ -1.28
USP4-213	ENST00000488520	LDLRAD3	Q86YD5	345 aa		7.06	□□□□□ -1.28
USP4-213	ENST00000488520	LAX1	Q8IWV1	398 aa		7.06	□□□□□ -1.28
USP4-213	ENST00000488520	ABHD12	Q8N2K0	398 aa		7.06	□□□□□ -1.28
USP4-213	ENST00000488520	PNKD	Q8N490	385 aa		7.06	□□□□□ -1.28
USP4-213	ENST00000488520	OR52M1	Q8NGK5	317 aa		7.06	□□□□□ -1.28
USP4-213	ENST00000488520	OR10J5	Q8NHC4	309 aa		7.06	□□□□□ -1.28
USP4-213	ENST00000488520	ZNF596	Q8TC21	504 aa		7.06	□□□□□ -1.28
USP4-213	ENST00000488520	CREB3L1	Q96BA8	519 aa		7.06	□□□□□ -1.28
USP4-213	ENST00000488520	GINS4	Q9BRT9	223 aa		7.06	□□□□□ -1.28
USP4-213	ENST00000488520	HDHD3	Q9BSH5	251 aa	Predicted RBP	7.06	□□□□□ -1.28
USP4-213	ENST00000488520	NXF2	Q9GZY0	626 aa	Known RBP	7.06	□□□□□ -1.28
USP4-213	ENST00000488520	TMEM133	Q9H2Q1	129 aa		7.06	□□□□□ -1.28
USP4-213	ENST00000488520	C16orf95	Q9H693	158 aa		7.06	□□□□□ -1.28
USP4-213	ENST00000488520	SCPEP1	Q9HB40	452 aa		7.06	□□□□□ -1.28
USP4-213	ENST00000488520		Q9N2K0	584 aa		7.06	□□□□□ -1.28
USP4-213	ENST00000488520	OR2S2	Q9NQN1	319 aa		7.06	□□□□□ -1.28
USP4-213	ENST00000488520	EXOSC5	Q9NQT4	235 aa	Known RBP eCLIP	7.06	□□□□□ -1.28
USP4-213	ENST00000488520	RBM7	Q9Y580	266 aa	Known RBP	7.06	□□□□□ -1.28
USP4-213	ENST00000488520	KMT2C	Q8NEZ4	4911 aa	Known RBP	7.06	□□□□□ -1.28
USP4-213	ENST00000488520	C12orf77	C9JDV5	145 aa		7.05	□□□□□ -1.28
USP4-213	ENST00000488520	BET1	O15155	118 aa		7.05	□□□□□ -1.28
USP4-213	ENST00000488520	NAPSA	O96009	420 aa		7.05	□□□□□ -1.28
USP4-213	ENST00000488520	FCGR3A	P08637	254 aa		7.05	□□□□□ -1.28
USP4-213	ENST00000488520	GSTT2B	P0CG30	244 aa		7.05	□□□□□ -1.28
USP4-213	ENST00000488520	COX7A1	P24310	79 aa		7.05	□□□□□ -1.28
USP4-213	ENST00000488520	IL3RA	P26951	378 aa		7.05	□□□□□ -1.28
USP4-213	ENST00000488520	CEACAM3	P40198	252 aa		7.05	□□□□□ -1.28
USP4-213	ENST00000488520	CEACAM6	P40199	344 aa		7.05	□□□□□ -1.28
USP4-213	ENST00000488520	INPP1	P49441	399 aa		7.05	□□□□□ -1.28
USP4-213	ENST00000488520	ARHGDIB	P52566	201 aa		7.05	□□□□□ -1.28
USP4-213	ENST00000488520	HLA-DRB3	P79483	266 aa		7.05	□□□□□ -1.28
USP4-213	ENST00000488520	HTD2	P86397	168 aa		7.05	□□□□□ -1.28
USP4-213	ENST00000488520	MADCAM1	Q13477	382 aa		7.05	□□□□□ -1.28
USP4-213	ENST00000488520	C17orf58	Q2M2W7	97 aa		7.05	□□□□□ -1.28
USP4-213	ENST00000488520	CNPY1	Q3B7I2	92 aa		7.05	□□□□□ -1.28
USP4-213	ENST00000488520	LCE4A	Q5TA78	99 aa		7.05	□□□□□ -1.28
USP4-213	ENST00000488520	STEAP3	Q658P3	488 aa		7.05	□□□□□ -1.28
USP4-213	ENST00000488520	LYG1	Q8N1E2	194 aa		7.05	□□□□□ -1.28
USP4-213	ENST00000488520	GAPT	Q8N292	157 aa		7.05	□□□□□ -1.28
USP4-213	ENST00000488520		Q8N7P7	452 aa		7.05	□□□□□ -1.28
USP4-213	ENST00000488520	OR4A4P	Q8NGN8	299 aa		7.05	□□□□□ -1.28
USP4-213	ENST00000488520	OR10X1	Q8NGY0	326 aa		7.05	□□□□□ -1.28
USP4-213	ENST00000488520	OR1L1	Q8NH94	360 aa		7.05	□□□□□ -1.28
USP4-213	ENST00000488520	NUDCD2	Q8WVJ2	157 aa		7.05	□□□□□ -1.28
USP4-213	ENST00000488520	CLEC7A	Q9BXN2	247 aa		7.05	□□□□□ -1.28
USP4-213	ENST00000488520	ZNF230	Q9UIE0	474 aa	Predicted RBP	7.05	□□□□□ -1.28
USP4-213	ENST00000488520	KCNK7	Q9Y2U2	307 aa		7.05	□□□□□ -1.28
USP4-213	ENST00000488520	SIGLEC9	Q9Y336	463 aa		7.05	□□□□□ -1.28
USP4-213	ENST00000488520	AMMECR1	Q9Y4X0	333 aa	Predicted RBP	7.05	□□□□□ -1.28
USP4-213	ENST00000488520	IGHV3-43	A0A0B4J1X8	118 aa		7.04	□□□□□ -1.28
USP4-213	ENST00000488520	MEIOC	A2RUB1	952 aa		7.04	□□□□□ -1.28
USP4-213	ENST00000488520	MEIS3P1	A6NDR6	274 aa		7.04	□□□□□ -1.28
USP4-213	ENST00000488520	BTBD17	A6NE02	478 aa		7.04	□□□□□ -1.28
USP4-213	ENST00000488520	NPIPB11	E5RHQ5	1161 aa		7.04	□□□□□ -1.28
USP4-213	ENST00000488520	F2RL2	O00254	374 aa		7.04	□□□□□ -1.28
USP4-213	ENST00000488520	FABP7	O15540	132 aa		7.04	□□□□□ -1.28
USP4-213	ENST00000488520	TSPAN9	O75954	239 aa		7.04	□□□□□ -1.28
USP4-213	ENST00000488520	HLA-DQB1	P01920	261 aa		7.04	□□□□□ -1.28
USP4-213	ENST00000488520	OPN1MW	P04001	364 aa		7.04	□□□□□ -1.28
USP4-213	ENST00000488520	IFNA6	P05013	189 aa		7.04	□□□□□ -1.28
USP4-213	ENST00000488520	SCT	P09683	121 aa		7.04	□□□□□ -1.28
USP4-213	ENST00000488520	GSTT2	P0CG29	244 aa		7.04	□□□□□ -1.28
USP4-213	ENST00000488520	OPN1MW2	P0DN77	364 aa		7.04	□□□□□ -1.28
USP4-213	ENST00000488520	OPN1MW3	P0DN78	364 aa		7.04	□□□□□ -1.28
USP4-213	ENST00000488520	CGB3	P0DN86	165 aa		7.04	□□□□□ -1.28
USP4-213	ENST00000488520	CGB7	P0DN87	165 aa		7.04	□□□□□ -1.28
USP4-213	ENST00000488520	IGHV3-43D	P0DP04	118 aa		7.04	□□□□□ -1.28
USP4-213	ENST00000488520	PTBP1	P26599	531 aa	Known RBP eCLIP	7.04	□□□□□ -1.28
USP4-213	ENST00000488520	SSTR5	P35346	364 aa		7.04	□□□□□ -1.28
USP4-213	ENST00000488520	DLX6	P56179	175 aa		7.04	□□□□□ -1.28
USP4-213	ENST00000488520	TSPAN5	P62079	268 aa		7.04	□□□□□ -1.28
USP4-213	ENST00000488520	KLRD1	Q13241	179 aa		7.04	□□□□□ -1.28
USP4-213	ENST00000488520	HERPUD1	Q15011	391 aa		7.04	□□□□□ -1.28
USP4-213	ENST00000488520	FOXB2	Q5VYV0	432 aa		7.04	□□□□□ -1.28
USP4-213	ENST00000488520	ZNF880	Q6PDB4	577 aa		7.04	□□□□□ -1.28
USP4-213	ENST00000488520	HOGA1	Q86XE5	327 aa		7.04	□□□□□ -1.28
USP4-213	ENST00000488520	BEST4	Q8NFU0	473 aa		7.04	□□□□□ -1.28
USP4-213	ENST00000488520	OR2AK2	Q8NG84	335 aa		7.04	□□□□□ -1.28
USP4-213	ENST00000488520	OR9G1	Q8NH87	305 aa		7.04	□□□□□ -1.28
USP4-213	ENST00000488520	UBALD1	Q8TB05	177 aa		7.04	□□□□□ -1.28
USP4-213	ENST00000488520	MAFIP	Q8WZ33	124 aa		7.04	□□□□□ -1.28
USP4-213	ENST00000488520	MIXL1	Q9H2W2	232 aa		7.04	□□□□□ -1.28
USP4-213	ENST00000488520	GHITM	Q9H3K2	345 aa		7.04	□□□□□ -1.28
USP4-213	ENST00000488520	LINC00574	Q9H8X3	128 aa		7.04	□□□□□ -1.28
USP4-213	ENST00000488520	NECAP2	Q9NVZ3	263 aa		7.04	□□□□□ -1.28
USP4-213	ENST00000488520	TAS2R8	Q9NYW2	309 aa		7.04	□□□□□ -1.28
USP4-213	ENST00000488520	ZNRD1	Q9P1U0	126 aa		7.04	□□□□□ -1.28
USP4-213	ENST00000488520	SLC23A1	Q9UHI7	598 aa		7.04	□□□□□ -1.28
USP4-213	ENST00000488520	JPT1	Q9UK76	154 aa		7.04	□□□□□ -1.28
USP4-213	ENST00000488520	VPREB3	Q9UKI3	123 aa		7.04	□□□□□ -1.28
USP4-213	ENST00000488520	ELF5	Q9UKW6	265 aa	Predicted RBP	7.04	□□□□□ -1.28
USP4-213	ENST00000488520	DNAH3	Q8TD57	4116 aa		7.03	□□□□□ -1.28
USP4-213	ENST00000488520	IGHV2-26	A0A0B4J1V2	119 aa		7.03	□□□□□ -1.28

Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms