RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 ZNF134P52741 427 aa8.35□□□□□ -1.07
SKA1-204ENST00000488454 TAS2R19P59542 299 aa8.35□□□□□ -1.07
SKA1-204ENST00000488454 TSPAN5P62079 268 aa8.35□□□□□ -1.07
SKA1-204ENST00000488454 HERPUD1Q15011 391 aa8.35□□□□□ -1.07
SKA1-204ENST00000488454 SSX2Q16385 188 aa8.35□□□□□ -1.07
SKA1-204ENST00000488454 DEFB112Q30KQ8 113 aa8.35□□□□□ -1.07
SKA1-204ENST00000488454 UTF1Q5T230 341 aa8.35□□□□□ -1.07
SKA1-204ENST00000488454 FAM53AQ6NSI3 398 aaPredicted RBP8.35□□□□□ -1.07
SKA1-204ENST00000488454 CCDC144NLQ6NUI1 221 aa8.35□□□□□ -1.07
SKA1-204ENST00000488454 SLC25A48Q6ZT89 311 aaKnown RBP8.35□□□□□ -1.07
SKA1-204ENST00000488454 LHFPL4Q7Z7J7 247 aa8.35□□□□□ -1.07
SKA1-204ENST00000488454 LYSMD2Q8IV50 215 aa8.35□□□□□ -1.07
SKA1-204ENST00000488454 LYG1Q8N1E2 194 aa8.35□□□□□ -1.07
SKA1-204ENST00000488454 Q8N402 240 aa8.35□□□□□ -1.07
SKA1-204ENST00000488454 GDPD1Q8N9F7 314 aa8.35□□□□□ -1.07
SKA1-204ENST00000488454 TMEM229BQ8NBD8 167 aa8.35□□□□□ -1.07
SKA1-204ENST00000488454 OR4P4Q8NGL7 312 aa8.35□□□□□ -1.07
SKA1-204ENST00000488454 SNAPC3Q92966 411 aa8.35□□□□□ -1.07
SKA1-204ENST00000488454 SLC6A7Q99884 636 aa8.35□□□□□ -1.07
SKA1-204ENST00000488454 TOLLIPQ9H0E2 274 aa8.35□□□□□ -1.07
SKA1-204ENST00000488454 C11orf54Q9H0W9 315 aaPredicted RBP8.35□□□□□ -1.07
SKA1-204ENST00000488454 EHFQ9NZC4 300 aa8.35□□□□□ -1.07
SKA1-204ENST00000488454 PIPOXQ9P0Z9 390 aa8.35□□□□□ -1.07
SKA1-204ENST00000488454 ZNF107Q9UII5 783 aaPredicted RBP8.35□□□□□ -1.07
SKA1-204ENST00000488454 ZNF221Q9UK13 617 aa8.35□□□□□ -1.07
SKA1-204ENST00000488454 HILPDAQ9Y5L2 63 aa8.35□□□□□ -1.07
SKA1-204ENST00000488454 V9GYH0 126 aa8.35□□□□□ -1.07
SKA1-204ENST00000488454 TLN2Q9Y4G6 2542 aa8.35□□□□□ -1.07
SKA1-204ENST00000488454 BTBD17A6NE02 478 aa8.34□□□□□ -1.07
SKA1-204ENST00000488454 OOSP1A8MZH6 123 aa8.34□□□□□ -1.07
SKA1-204ENST00000488454 J3QRK9 145 aa8.34□□□□□ -1.07
SKA1-204ENST00000488454 RAB29O14966 203 aa8.34□□□□□ -1.07
SKA1-204ENST00000488454 SLC31A2O15432 143 aa8.34□□□□□ -1.07
SKA1-204ENST00000488454 GAPDHP04406 335 aaKnown RBP8.34□□□□□ -1.07
SKA1-204ENST00000488454 OR8U9P0C7N5 309 aa8.34□□□□□ -1.07
SKA1-204ENST00000488454 TBPP20226 339 aa8.34□□□□□ -1.07
SKA1-204ENST00000488454 NFYAP23511 347 aaPredicted RBP8.34□□□□□ -1.07
SKA1-204ENST00000488454 HRH1P35367 487 aa8.34□□□□□ -1.07
SKA1-204ENST00000488454 GPR12P47775 334 aa8.34□□□□□ -1.07
SKA1-204ENST00000488454 RFX2P48378 723 aa8.34□□□□□ -1.07
SKA1-204ENST00000488454 LUMP51884 338 aaPredicted RBP8.34□□□□□ -1.07
SKA1-204ENST00000488454 AP3S2P59780 193 aa8.34□□□□□ -1.07
SKA1-204ENST00000488454 RNASE10Q5GAN6 216 aaKnown RBP8.34□□□□□ -1.07
SKA1-204ENST00000488454 TPTE2P1Q5T6R2 138 aa8.34□□□□□ -1.07
SKA1-204ENST00000488454 TMEM17Q86X19 198 aa8.34□□□□□ -1.07
SKA1-204ENST00000488454 H1FOOQ8IZA3 346 aaPredicted RBP8.34□□□□□ -1.07
SKA1-204ENST00000488454 ZNF439Q8NDP4 499 aa8.34□□□□□ -1.07
SKA1-204ENST00000488454 OR6F1Q8NGZ6 308 aa8.34□□□□□ -1.07
SKA1-204ENST00000488454 OR8U1Q8NH10 309 aa8.34□□□□□ -1.07
SKA1-204ENST00000488454 FAM216AQ8WUB2 273 aa8.34□□□□□ -1.07
SKA1-204ENST00000488454 GIMAP1Q8WWP7 306 aa8.34□□□□□ -1.07
SKA1-204ENST00000488454 TOMM40LQ969M1 308 aa8.34□□□□□ -1.07
SKA1-204ENST00000488454 WDR89Q96FK6 387 aaPredicted RBP8.34□□□□□ -1.07
SKA1-204ENST00000488454 S1PR3Q99500 378 aa8.34□□□□□ -1.07
SKA1-204ENST00000488454 ABCB10Q9NRK6 738 aa8.34□□□□□ -1.07
SKA1-204ENST00000488454 ZNRD1Q9P1U0 126 aa8.34□□□□□ -1.07
SKA1-204ENST00000488454 RNF150Q9ULK6 438 aa8.34□□□□□ -1.07
SKA1-204ENST00000488454 OR2W1Q9Y3N9 320 aa8.34□□□□□ -1.07
SKA1-204ENST00000488454 SOX21Q9Y651 276 aaPredicted RBP8.34□□□□□ -1.07
SKA1-204ENST00000488454 ANK3Q12955 4377 aaKnown RBP8.33□□□□□ -1.08
SKA1-204ENST00000488454 SLC22A5O76082 557 aa8.33□□□□□ -1.08
SKA1-204ENST00000488454 RAB3DO95716 219 aa8.33□□□□□ -1.08
SKA1-204ENST00000488454 CD3DP04234 171 aa8.33□□□□□ -1.08
SKA1-204ENST00000488454 BRS3P32247 399 aa8.33□□□□□ -1.08
SKA1-204ENST00000488454 HERV-K104P61576 105 aa8.33□□□□□ -1.08
SKA1-204ENST00000488454 BAMBIQ13145 260 aa8.33□□□□□ -1.08
SKA1-204ENST00000488454 DYRK1AQ13627 763 aa8.33□□□□□ -1.08
SKA1-204ENST00000488454 MEF2DQ14814 521 aa8.33□□□□□ -1.08
SKA1-204ENST00000488454 ZNF79Q15937 498 aa8.33□□□□□ -1.08
SKA1-204ENST00000488454 VAX1Q5SQQ9 334 aa8.33□□□□□ -1.08
SKA1-204ENST00000488454 TRIQKQ629K1 86 aa8.33□□□□□ -1.08
SKA1-204ENST00000488454 STEAP1BQ6NZ63 245 aa8.33□□□□□ -1.08
SKA1-204ENST00000488454 DHRS11Q6UWP2 260 aa8.33□□□□□ -1.08
SKA1-204ENST00000488454 OVCH2Q7RTZ1 564 aa8.33□□□□□ -1.08
SKA1-204ENST00000488454 TOMM5Q8N4H5 51 aa8.33□□□□□ -1.08
SKA1-204ENST00000488454 SIGLECL1Q8N7X8 197 aa8.33□□□□□ -1.08
SKA1-204ENST00000488454 C17orf50Q8WW18 174 aa8.33□□□□□ -1.08
SKA1-204ENST00000488454 ABHD14BQ96IU4 210 aa8.33□□□□□ -1.08
SKA1-204ENST00000488454 JMJD8Q96S16 334 aa8.33□□□□□ -1.08
SKA1-204ENST00000488454 ZNF2Q9BSG1 426 aaPredicted RBP8.33□□□□□ -1.08
SKA1-204ENST00000488454 WDR12Q9GZL7 423 aaKnown RBP8.33□□□□□ -1.08
SKA1-204ENST00000488454 SRRQ9GZT4 340 aa8.33□□□□□ -1.08
SKA1-204ENST00000488454 MEGF9Q9H1U4 602 aa8.33□□□□□ -1.08
SKA1-204ENST00000488454 DPAGT1Q9H3H5 408 aa8.33□□□□□ -1.08
SKA1-204ENST00000488454 RBMX2Q9Y388 322 aaKnown RBP8.33□□□□□ -1.08
SKA1-204ENST00000488454 DISC1C4P0D8 188 aa8.32□□□□□ -1.08
SKA1-204ENST00000488454 LY6LH3BQJ8 138 aa8.32□□□□□ -1.08
SKA1-204ENST00000488454 M0QYG6 137 aa8.32□□□□□ -1.08
SKA1-204ENST00000488454 HSD17B6O14756 317 aa8.32□□□□□ -1.08
SKA1-204ENST00000488454 TXNL1O43396 289 aa8.32□□□□□ -1.08
SKA1-204ENST00000488454 AKAIN1P0CW23 69 aa8.32□□□□□ -1.08
SKA1-204ENST00000488454 AADACP22760 399 aa8.32□□□□□ -1.08
SKA1-204ENST00000488454 FAUP35544 74 aaKnown RBP8.32□□□□□ -1.08
SKA1-204ENST00000488454 FXYD4P59646 89 aa8.32□□□□□ -1.08
SKA1-204ENST00000488454 ZNF846Q147U1 533 aa8.32□□□□□ -1.08
SKA1-204ENST00000488454 PLA1AQ53H76 456 aa8.32□□□□□ -1.08
SKA1-204ENST00000488454 ZNF57Q68EA5 555 aaPredicted RBP8.32□□□□□ -1.08
SKA1-204ENST00000488454 Q6YL49 198 aa8.32□□□□□ -1.08
SKA1-204ENST00000488454 MOB3BQ86TA1 216 aa8.32□□□□□ -1.08
SKA1-204ENST00000488454 TGIF2LXQ8IUE1 241 aa8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms