RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 SPP1P10451 314 aa12.49□□□□□ -0.41
HDAC6-220ENST00000477528 SH3BGRL3Q9H299 93 aa12.49□□□□□ -0.41
HDAC6-220ENST00000477528 ZNF331Q9NQX6 463 aaPredicted RBP12.49□□□□□ -0.41
HDAC6-220ENST00000477528 C16orf97H3BN30 126 aa12.49□□□□□ -0.41
HDAC6-220ENST00000477528 SMPD2O60906 423 aa12.49□□□□□ -0.41
HDAC6-220ENST00000477528 UCP1P25874 307 aa12.49□□□□□ -0.41
HDAC6-220ENST00000477528 HFEQ30201 348 aa12.49□□□□□ -0.41
HDAC6-220ENST00000477528 KDF1Q8NAX2 398 aaPredicted RBP12.49□□□□□ -0.41
HDAC6-220ENST00000477528 FGFBP3Q8TAT2 258 aa12.49□□□□□ -0.41
HDAC6-220ENST00000477528 H0YIZ8 118 aa12.48□□□□□ -0.41
HDAC6-220ENST00000477528 AP4M1O00189 453 aa12.48□□□□□ -0.41
HDAC6-220ENST00000477528 SMUG1Q53HV7 270 aa12.48□□□□□ -0.41
HDAC6-220ENST00000477528 OR2V2Q96R30 315 aa12.48□□□□□ -0.41
HDAC6-220ENST00000477528 GINS3Q9BRX5 216 aa12.48□□□□□ -0.41
HDAC6-220ENST00000477528 RSG1Q9BU20 258 aa12.48□□□□□ -0.41
HDAC6-220ENST00000477528 TMPRSS5Q9H3S3 457 aa12.48□□□□□ -0.41
HDAC6-220ENST00000477528 PI4KAP42356 2102 aa12.48□□□□□ -0.41
HDAC6-220ENST00000477528 IGKV1D-8A0A087WSZ0 117 aa12.48□□□□□ -0.41
HDAC6-220ENST00000477528 F8VVB4 439 aa12.48□□□□□ -0.41
HDAC6-220ENST00000477528 F8VWA3 439 aa12.48□□□□□ -0.41
HDAC6-220ENST00000477528 BCL2P10415 239 aa12.48□□□□□ -0.41
HDAC6-220ENST00000477528 ID4P47928 161 aa12.48□□□□□ -0.41
HDAC6-220ENST00000477528 HIST1H3AP68431 136 aa12.48□□□□□ -0.41
HDAC6-220ENST00000477528 SNX22Q96L94 193 aa12.48□□□□□ -0.41
HDAC6-220ENST00000477528 TNFSF10P50591 281 aa12.48□□□□□ -0.41
HDAC6-220ENST00000477528 KRTCAP3Q53RY4 240 aa12.48□□□□□ -0.41
HDAC6-220ENST00000477528 FOXL2NBQ6ZUU3 175 aa12.48□□□□□ -0.41
HDAC6-220ENST00000477528 SLC35E3Q7Z769 313 aa12.48□□□□□ -0.41
HDAC6-220ENST00000477528 WDYHV1Q96HA8 205 aa12.48□□□□□ -0.41
HDAC6-220ENST00000477528 SAP30LQ9HAJ7 183 aa12.48□□□□□ -0.41
HDAC6-220ENST00000477528 TREM2Q9NZC2 230 aa12.48□□□□□ -0.41
HDAC6-220ENST00000477528 RHBDL1O75783 438 aa12.48□□□□□ -0.41
HDAC6-220ENST00000477528 MPV17P39210 176 aa12.48□□□□□ -0.41
HDAC6-220ENST00000477528 PRNDQ9UKY0 176 aa12.48□□□□□ -0.41
HDAC6-220ENST00000477528 MPDZO75970 2070 aa12.47□□□□□ -0.41
HDAC6-220ENST00000477528 G3V3Q6 166 aa12.47□□□□□ -0.41
HDAC6-220ENST00000477528 HSPB1P04792 205 aaKnown RBP12.47□□□□□ -0.41
HDAC6-220ENST00000477528 VSTM2AQ8TAG5 236 aa12.47□□□□□ -0.41
HDAC6-220ENST00000477528 COL4A3Q01955 1670 aa12.47□□□□□ -0.41
HDAC6-220ENST00000477528 K7EQM0 130 aa12.47□□□□□ -0.41
HDAC6-220ENST00000477528 OTX1P32242 354 aaPredicted RBP12.47□□□□□ -0.41
HDAC6-220ENST00000477528 CYB561D1Q8N8Q1 229 aa12.47□□□□□ -0.41
HDAC6-220ENST00000477528 RTTNQ86VV8 2226 aa12.47□□□□□ -0.41
HDAC6-220ENST00000477528 C5orf63A6NC05 138 aa12.47□□□□□ -0.41
HDAC6-220ENST00000477528 C11orf94C9JXX5 98 aa12.47□□□□□ -0.41
HDAC6-220ENST00000477528 CLDN14O95500 239 aa12.47□□□□□ -0.41
HDAC6-220ENST00000477528 MEOX2P50222 304 aa12.47□□□□□ -0.41
HDAC6-220ENST00000477528 Q0VFX4 171 aa12.47□□□□□ -0.41
HDAC6-220ENST00000477528 RNF144BQ7Z419 303 aa12.47□□□□□ -0.41
HDAC6-220ENST00000477528 MOB3BQ86TA1 216 aa12.47□□□□□ -0.41
HDAC6-220ENST00000477528 CTDSP1Q9GZU7 261 aa12.47□□□□□ -0.41
HDAC6-220ENST00000477528 RBKSQ9H477 322 aa12.47□□□□□ -0.41
HDAC6-220ENST00000477528 HES4Q9HCC6 221 aa12.47□□□□□ -0.41
HDAC6-220ENST00000477528 KIF26AQ9ULI4 1882 aaPredicted RBP12.47□□□□□ -0.41
HDAC6-220ENST00000477528 GFRA1P56159 465 aa12.46□□□□□ -0.41
HDAC6-220ENST00000477528 TLE1Q04724 770 aa12.46□□□□□ -0.41
HDAC6-220ENST00000477528 SSX8Q7RTT4 187 aa12.46□□□□□ -0.41
HDAC6-220ENST00000477528 DRAM1Q8N682 238 aa12.46□□□□□ -0.41
HDAC6-220ENST00000477528 TMEM18Q96B42 140 aa12.46□□□□□ -0.41
HDAC6-220ENST00000477528 SMIM8Q96KF7 97 aa12.46□□□□□ -0.41
HDAC6-220ENST00000477528 CARHSP1Q9Y2V2 147 aaKnown RBP12.46□□□□□ -0.41
HDAC6-220ENST00000477528 IGKV1-12A0A0C4DH73 117 aa12.46□□□□□ -0.41
HDAC6-220ENST00000477528 IGKV1D-12P01611 117 aa12.46□□□□□ -0.41
HDAC6-220ENST00000477528 ODAMA1E959 279 aa12.46□□□□□ -0.41
HDAC6-220ENST00000477528 OR10J4P0C629 311 aa12.46□□□□□ -0.41
HDAC6-220ENST00000477528 SLC35E4Q6ICL7 350 aa12.46□□□□□ -0.41
HDAC6-220ENST00000477528 ABHD14AQ9BUJ0 271 aa12.46□□□□□ -0.41
HDAC6-220ENST00000477528 LY6G6EA0A0G2JKS1 128 aa12.46□□□□□ -0.42
HDAC6-220ENST00000477528 IGSF23A1L1A6 192 aa12.46□□□□□ -0.42
HDAC6-220ENST00000477528 RAB29O14966 203 aa12.46□□□□□ -0.42
HDAC6-220ENST00000477528 B3GALT5-AS1P59052 145 aa12.46□□□□□ -0.42
HDAC6-220ENST00000477528 SSX2Q16385 188 aa12.46□□□□□ -0.42
HDAC6-220ENST00000477528 GCSAMQ8N6F7 178 aa12.46□□□□□ -0.42
HDAC6-220ENST00000477528 ZDHHC11Q9H8X9 412 aa12.46□□□□□ -0.42
HDAC6-220ENST00000477528 U3KQA8 63 aa12.46□□□□□ -0.42
HDAC6-220ENST00000477528 C2orf16Q68DN1 1984 aa12.45□□□□□ -0.42
HDAC6-220ENST00000477528 OPRK1P41145 380 aa12.45□□□□□ -0.42
HDAC6-220ENST00000477528 FHITP49789 147 aa12.45□□□□□ -0.42
HDAC6-220ENST00000477528 CNN1P51911 297 aaKnown RBP12.45□□□□□ -0.42
HDAC6-220ENST00000477528 CSRP2Q16527 193 aa12.45□□□□□ -0.42
HDAC6-220ENST00000477528 MRPL30Q8TCC3 161 aaKnown RBP12.45□□□□□ -0.42
HDAC6-220ENST00000477528 ITLN1Q8WWA0 313 aa12.45□□□□□ -0.42
HDAC6-220ENST00000477528 GTF3AQ92664 365 aaKnown RBP12.45□□□□□ -0.42
HDAC6-220ENST00000477528 RND1Q92730 232 aa12.45□□□□□ -0.42
HDAC6-220ENST00000477528 C18orf12Q96KH6 178 aa12.45□□□□□ -0.42
HDAC6-220ENST00000477528 IL36RNQ9UBH0 155 aa12.45□□□□□ -0.42
HDAC6-220ENST00000477528 TMEM56-RWDD3S4R434 201 aa12.45□□□□□ -0.42
HDAC6-220ENST00000477528 CD59P13987 128 aa12.45□□□□□ -0.42
HDAC6-220ENST00000477528 ERVFC1-1P60608 527 aa12.45□□□□□ -0.42
HDAC6-220ENST00000477528 TNFRSF9Q07011 255 aa12.45□□□□□ -0.42
HDAC6-220ENST00000477528 C1orf162Q8NEQ5 155 aaPredicted RBP12.45□□□□□ -0.42
HDAC6-220ENST00000477528 TAF15Q92804 592 aaKnown RBP eCLIP12.45□□□□□ -0.425e-10■□□□□ 10.5
HDAC6-220ENST00000477528 CD3EP07766 207 aa12.45□□□□□ -0.42
HDAC6-220ENST00000477528 NPY1RP25929 384 aa12.45□□□□□ -0.42
HDAC6-220ENST00000477528 SUPT4H1P63272 117 aaKnown RBP12.45□□□□□ -0.42
HDAC6-220ENST00000477528 GUCD1Q96NT3 240 aa12.45□□□□□ -0.42
HDAC6-220ENST00000477528 ZNF355PQ9NSJ1 428 aa12.45□□□□□ -0.42
HDAC6-220ENST00000477528 NCOR1O75376 2440 aa12.45□□□□□ -0.42
HDAC6-220ENST00000477528 IGKV1-27A0A075B6S5 117 aa12.45□□□□□ -0.42
HDAC6-220ENST00000477528 PAGE4O60829 102 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms