RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 ANKRD37Q7Z713 158 aa11.67□□□□□ -0.54
COL6A3-209ENST00000472056 PGLYRP3Q96LB9 341 aa11.67□□□□□ -0.54
COL6A3-209ENST00000472056 MRPL18Q9H0U6 180 aaKnown RBP11.67□□□□□ -0.54
COL6A3-209ENST00000472056 A0A1W2PS18 150 aa11.67□□□□□ -0.54
COL6A3-209ENST00000472056 KBTBD11O94819 623 aa11.67□□□□□ -0.54
COL6A3-209ENST00000472056 MC5RP33032 325 aa11.67□□□□□ -0.54
COL6A3-209ENST00000472056 OR5A1Q8NGJ0 315 aa11.67□□□□□ -0.54
COL6A3-209ENST00000472056 SPSB4Q96A44 273 aa11.67□□□□□ -0.54
COL6A3-209ENST00000472056 TM4SF19Q96DZ7 209 aa11.67□□□□□ -0.54
COL6A3-209ENST00000472056 EML5Q05BV3 1969 aa11.67□□□□□ -0.54
COL6A3-209ENST00000472056 CXCL13O43927 109 aa11.67□□□□□ -0.54
COL6A3-209ENST00000472056 TRGC1P0CF51 173 aa11.67□□□□□ -0.54
COL6A3-209ENST00000472056 MVDP53602 400 aa11.67□□□□□ -0.54
COL6A3-209ENST00000472056 OR4X1Q8NH49 305 aa11.67□□□□□ -0.54
COL6A3-209ENST00000472056 MAS1LP35410 378 aa11.66□□□□□ -0.54
COL6A3-209ENST00000472056 ARF6P62330 175 aa11.66□□□□□ -0.54
COL6A3-209ENST00000472056 MRPL54Q6P161 138 aaKnown RBP11.66□□□□□ -0.54
COL6A3-209ENST00000472056 OR4D9Q8NGE8 314 aa11.66□□□□□ -0.54
COL6A3-209ENST00000472056 IMMP2LQ96T52 175 aa11.66□□□□□ -0.54
COL6A3-209ENST00000472056 HYPMO75409 117 aa11.66□□□□□ -0.54
COL6A3-209ENST00000472056 CSN3P07498 182 aa11.66□□□□□ -0.54
COL6A3-209ENST00000472056 MEF2CQ06413 473 aaPredicted RBP11.66□□□□□ -0.54
COL6A3-209ENST00000472056 ZDHHC16Q969W1 377 aa11.66□□□□□ -0.54
COL6A3-209ENST00000472056 WSB2Q9NYS7 404 aaPredicted RBP11.66□□□□□ -0.54
COL6A3-209ENST00000472056 VSIG4Q9Y279 399 aa11.66□□□□□ -0.54
COL6A3-209ENST00000472056 H7C2G1 150 aa11.66□□□□□ -0.54
COL6A3-209ENST00000472056 MRPS11P82912 194 aaKnown RBP11.66□□□□□ -0.54
COL6A3-209ENST00000472056 OR10D3Q8NH80 312 aa11.66□□□□□ -0.54
COL6A3-209ENST00000472056 ZNF502Q8TBZ5 544 aa11.66□□□□□ -0.54
COL6A3-209ENST00000472056 CHODLQ9H9P2 273 aa11.66□□□□□ -0.54
COL6A3-209ENST00000472056 RNASE1P07998 156 aaKnown RBP11.66□□□□□ -0.54
COL6A3-209ENST00000472056 CCL11P51671 97 aa11.66□□□□□ -0.54
COL6A3-209ENST00000472056 LRRC75AQ8NAA5 344 aa11.66□□□□□ -0.54
COL6A3-209ENST00000472056 SERGEFQ9UGK8 458 aa11.66□□□□□ -0.54
COL6A3-209ENST00000472056 MED13Q9UHV7 2174 aa11.66□□□□□ -0.54
COL6A3-209ENST00000472056 DPRXA6NFQ7 191 aa11.66□□□□□ -0.54
COL6A3-209ENST00000472056 RPL36A-HNRNPH2H7BZ11 118 aa11.66□□□□□ -0.54
COL6A3-209ENST00000472056 ZNF32P17041 273 aa11.66□□□□□ -0.54
COL6A3-209ENST00000472056 LINC00469Q8N7U9 141 aa11.66□□□□□ -0.54
COL6A3-209ENST00000472056 RAB1CQ92928 201 aa11.66□□□□□ -0.54
COL6A3-209ENST00000472056 NPIPB7O75200 414 aa11.65□□□□□ -0.54
COL6A3-209ENST00000472056 ATP5LO75964 103 aa11.65□□□□□ -0.54
COL6A3-209ENST00000472056 SSPNQ14714 243 aa11.65□□□□□ -0.54
COL6A3-209ENST00000472056 SS18L1O75177 396 aaPredicted RBP11.65□□□□□ -0.54
COL6A3-209ENST00000472056 MRGPRFQ96AM1 343 aa11.65□□□□□ -0.54
COL6A3-209ENST00000472056 SMIM14Q96QK8 99 aa11.65□□□□□ -0.54
COL6A3-209ENST00000472056 CDAP32320 146 aa11.65□□□□□ -0.54
COL6A3-209ENST00000472056 ZXDAP98168 799 aa11.65□□□□□ -0.54
COL6A3-209ENST00000472056 ANKRD34AQ69YU3 496 aa11.65□□□□□ -0.54
COL6A3-209ENST00000472056 ALG14Q96F25 216 aa11.65□□□□□ -0.54
COL6A3-209ENST00000472056 NPDC1Q9NQX5 325 aaPredicted RBP11.65□□□□□ -0.54
COL6A3-209ENST00000472056 PNLIPP16233 465 aa11.65□□□□□ -0.54
COL6A3-209ENST00000472056 SAXO1Q8IYX7 474 aa11.65□□□□□ -0.54
COL6A3-209ENST00000472056 PUSL1Q8N0Z8 303 aaKnown RBP11.65□□□□□ -0.54
COL6A3-209ENST00000472056 WNT16Q9UBV4 365 aa11.65□□□□□ -0.54
COL6A3-209ENST00000472056 TRAV30A0A087WSZ9 112 aa11.65□□□□□ -0.54
COL6A3-209ENST00000472056 A1L4Q6 167 aa11.65□□□□□ -0.54
COL6A3-209ENST00000472056 C1QTNF9BB2RNN3 333 aa11.65□□□□□ -0.54
COL6A3-209ENST00000472056 CA6P23280 308 aa11.65□□□□□ -0.54
COL6A3-209ENST00000472056 RPS4XP62701 263 aaKnown RBP11.65□□□□□ -0.54
COL6A3-209ENST00000472056 OR10S1Q8NGN2 331 aa11.65□□□□□ -0.54
COL6A3-209ENST00000472056 TRBV5-3A0A0A0MS03 114 aa11.65□□□□□ -0.54
COL6A3-209ENST00000472056 NPIPB13A6NJU9 1138 aa11.65□□□□□ -0.54
COL6A3-209ENST00000472056 NPIPB4C9JG80 1138 aa11.65□□□□□ -0.54
COL6A3-209ENST00000472056 ZNF788Q6ZQV5 615 aa11.65□□□□□ -0.54
COL6A3-209ENST00000472056 KIR2DL4Q99706 377 aa11.65□□□□□ -0.54
COL6A3-209ENST00000472056 CEACAM5P06731 702 aa11.65□□□□□ -0.55
COL6A3-209ENST00000472056 LGALS3P17931 250 aaKnown RBP11.65□□□□□ -0.55
COL6A3-209ENST00000472056 ZNF774Q6NX45 483 aa11.65□□□□□ -0.55
COL6A3-209ENST00000472056 WNT9BO14905 357 aa11.64□□□□□ -0.55
COL6A3-209ENST00000472056 TNFAIP6P98066 277 aaPredicted RBP11.64□□□□□ -0.55
COL6A3-209ENST00000472056 ZNF324O75467 553 aaPredicted RBP11.64□□□□□ -0.55
COL6A3-209ENST00000472056 SLC6A13Q9NSD5 602 aa11.64□□□□□ -0.55
COL6A3-209ENST00000472056 CD300CQ08708 224 aa11.64□□□□□ -0.55
COL6A3-209ENST00000472056 C10orf128Q5T292 105 aa11.64□□□□□ -0.55
COL6A3-209ENST00000472056 TMEM78Q5T7P6 136 aa11.64□□□□□ -0.55
COL6A3-209ENST00000472056 ATG4DQ86TL0 474 aaPredicted RBP11.64□□□□□ -0.55
COL6A3-209ENST00000472056 ZNF645Q8N7E2 425 aa11.64□□□□□ -0.55
COL6A3-209ENST00000472056 GVQW1Q8N7I0 195 aa11.64□□□□□ -0.55
COL6A3-209ENST00000472056 HARBI1Q96MB7 349 aa11.64□□□□□ -0.55
COL6A3-209ENST00000472056 ADAMTS7Q9UKP4 1686 aa11.64□□□□□ -0.55
COL6A3-209ENST00000472056 DENND4AQ7Z401 1863 aa11.64□□□□□ -0.55
COL6A3-209ENST00000472056 DUSP2Q05923 314 aa11.64□□□□□ -0.55
COL6A3-209ENST00000472056 LDLRAD3Q86YD5 345 aa11.64□□□□□ -0.55
COL6A3-209ENST00000472056 GPR35Q9HC97 309 aa11.64□□□□□ -0.55
COL6A3-209ENST00000472056 J3QR06 171 aa11.64□□□□□ -0.55
COL6A3-209ENST00000472056 OR2A4O95047 310 aa11.64□□□□□ -0.55
COL6A3-209ENST00000472056 NGFRP08138 427 aa11.64□□□□□ -0.55
COL6A3-209ENST00000472056 SAPCD1Q5SSQ6 148 aa11.64□□□□□ -0.55
COL6A3-209ENST00000472056 OR2A7Q96R45 310 aa11.64□□□□□ -0.55
COL6A3-209ENST00000472056 AICDAQ9GZX7 198 aa11.64□□□□□ -0.55
COL6A3-209ENST00000472056 TCFL5Q9UL49 500 aa11.64□□□□□ -0.55
COL6A3-209ENST00000472056 J3QT63 122 aa11.64□□□□□ -0.55
COL6A3-209ENST00000472056 RSPO2Q6UXX9 243 aaPredicted RBP11.64□□□□□ -0.55
COL6A3-209ENST00000472056 NBASA2RRP1 2371 aa11.64□□□□□ -0.55
COL6A3-209ENST00000472056 NKX2-6A6NCS4 301 aa11.64□□□□□ -0.55
COL6A3-209ENST00000472056 PRF1P14222 555 aa11.64□□□□□ -0.55
COL6A3-209ENST00000472056 HINT1P49773 126 aaPredicted RBP11.64□□□□□ -0.55
COL6A3-209ENST00000472056 CD200R1LQ6Q8B3 271 aa11.64□□□□□ -0.55
COL6A3-209ENST00000472056 MRPL16Q9NX20 251 aaKnown RBP11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms