RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 CD24P25063 80 aa9.6□□□□□ -0.87
VPS13D-204ENST00000469054 REG1BP48304 166 aa9.6□□□□□ -0.87
VPS13D-204ENST00000469054 CCBE1Q6UXH8 406 aaPredicted RBP9.6□□□□□ -0.87
VPS13D-204ENST00000469054 LIAT1Q6ZQX7 453 aa9.6□□□□□ -0.87
VPS13D-204ENST00000469054 THNSL2Q86YJ6 484 aa9.6□□□□□ -0.87
VPS13D-204ENST00000469054 TGIF2LXQ8IUE1 241 aa9.6□□□□□ -0.87
VPS13D-204ENST00000469054 DRAM1Q8N682 238 aa9.6□□□□□ -0.87
VPS13D-204ENST00000469054 OR56B4Q8NH76 319 aa9.6□□□□□ -0.87
VPS13D-204ENST00000469054 MCFD2Q8NI22 146 aa9.6□□□□□ -0.87
VPS13D-204ENST00000469054 GPX8Q8TED1 209 aa9.6□□□□□ -0.87
VPS13D-204ENST00000469054 C15orf40Q8WUR7 153 aa9.6□□□□□ -0.87
VPS13D-204ENST00000469054 CAPSLQ8WWF8 208 aa9.6□□□□□ -0.87
VPS13D-204ENST00000469054 RTN4IP1Q8WWV3 396 aaPredicted RBP9.6□□□□□ -0.87
VPS13D-204ENST00000469054 GCDHQ92947 438 aaPredicted RBP9.6□□□□□ -0.87
VPS13D-204ENST00000469054 GINS4Q9BRT9 223 aa9.6□□□□□ -0.87
VPS13D-204ENST00000469054 GHITMQ9H3K2 345 aa9.6□□□□□ -0.87
VPS13D-204ENST00000469054 SCPEP1Q9HB40 452 aa9.6□□□□□ -0.87
VPS13D-204ENST00000469054 PITPNC1Q9UKF7 332 aa9.6□□□□□ -0.87
VPS13D-204ENST00000469054 ANAPC10Q9UM13 185 aa9.6□□□□□ -0.87
VPS13D-204ENST00000469054 SAA2-SAA4A0A096LPE2 208 aa9.59□□□□□ -0.87
VPS13D-204ENST00000469054 SULT1C2O00338 296 aa9.59□□□□□ -0.87
VPS13D-204ENST00000469054 RAB29O14966 203 aa9.59□□□□□ -0.87
VPS13D-204ENST00000469054 LANCL1O43813 399 aa9.59□□□□□ -0.87
VPS13D-204ENST00000469054 FCER2P06734 321 aa9.59□□□□□ -0.87
VPS13D-204ENST00000469054 FAM106CPP0CH98 169 aa9.59□□□□□ -0.87
VPS13D-204ENST00000469054 SAA2P0DJI9 122 aaPredicted RBP9.59□□□□□ -0.87
VPS13D-204ENST00000469054 HKR1P10072 659 aa9.59□□□□□ -0.87
VPS13D-204ENST00000469054 OR3A3P47888 321 aa9.59□□□□□ -0.87
VPS13D-204ENST00000469054 ARPC4P59998 168 aa9.59□□□□□ -0.87
VPS13D-204ENST00000469054 ACTG1P63261 375 aa9.59□□□□□ -0.87
VPS13D-204ENST00000469054 HABP2Q14520 560 aaPredicted RBP9.59□□□□□ -0.87
VPS13D-204ENST00000469054 DHRS7BQ6IAN0 325 aaPredicted RBP9.59□□□□□ -0.87
VPS13D-204ENST00000469054 FAM71F2Q6NXP2 309 aa9.59□□□□□ -0.87
VPS13D-204ENST00000469054 ZNF833PQ6ZTB9 187 aa9.59□□□□□ -0.87
VPS13D-204ENST00000469054 MOB3BQ86TA1 216 aa9.59□□□□□ -0.87
VPS13D-204ENST00000469054 H1FOOQ8IZA3 346 aaPredicted RBP9.59□□□□□ -0.87
VPS13D-204ENST00000469054 CFHR4Q92496 578 aa9.59□□□□□ -0.87
VPS13D-204ENST00000469054 SNAPC3Q92966 411 aa9.59□□□□□ -0.87
VPS13D-204ENST00000469054 DIRAS2Q96HU8 199 aa9.59□□□□□ -0.87
VPS13D-204ENST00000469054 ABHD14BQ96IU4 210 aa9.59□□□□□ -0.87
VPS13D-204ENST00000469054 ABHD1Q96SE0 405 aa9.59□□□□□ -0.87
VPS13D-204ENST00000469054 ZNF251Q9BRH9 671 aa9.59□□□□□ -0.87
VPS13D-204ENST00000469054 MMP27Q9H306 513 aa9.59□□□□□ -0.87
VPS13D-204ENST00000469054 RAB18Q9NP72 206 aa9.59□□□□□ -0.87
VPS13D-204ENST00000469054 IFT46Q9NQC8 304 aa9.59□□□□□ -0.87
VPS13D-204ENST00000469054 RNF150Q9ULK6 438 aa9.59□□□□□ -0.87
VPS13D-204ENST00000469054 IGHV3-72A0A0B4J1Y9 119 aa9.58□□□□□ -0.88
VPS13D-204ENST00000469054 TMEM89A2RUT3 159 aa9.58□□□□□ -0.88
VPS13D-204ENST00000469054 OR8U9P0C7N5 309 aa9.58□□□□□ -0.88
VPS13D-204ENST00000469054 NAT1P18440 290 aa9.58□□□□□ -0.88
VPS13D-204ENST00000469054 NFYAP23511 347 aaPredicted RBP9.58□□□□□ -0.88
VPS13D-204ENST00000469054 FOXB2Q5VYV0 432 aa9.58□□□□□ -0.88
VPS13D-204ENST00000469054 TMEM219Q86XT9 240 aa9.58□□□□□ -0.88
VPS13D-204ENST00000469054 OR8U1Q8NH10 309 aa9.58□□□□□ -0.88
VPS13D-204ENST00000469054 TAF15Q92804 592 aaKnown RBP eCLIP9.58□□□□□ -0.88
VPS13D-204ENST00000469054 S1PR3Q99500 378 aa9.58□□□□□ -0.88
VPS13D-204ENST00000469054 C1RLQ9NZP8 487 aa9.58□□□□□ -0.88
VPS13D-204ENST00000469054 ZNF221Q9UK13 617 aa9.58□□□□□ -0.88
VPS13D-204ENST00000469054 GAB2Q9UQC2 676 aa9.58□□□□□ -0.88
VPS13D-204ENST00000469054 RBM7Q9Y580 266 aaKnown RBP9.58□□□□□ -0.88
VPS13D-204ENST00000469054 A3GALT2U3KPV4 340 aa9.58□□□□□ -0.88
VPS13D-204ENST00000469054 CHST1O43916 411 aa9.57□□□□□ -0.88
VPS13D-204ENST00000469054 IGKV1D-33P01593 117 aa9.57□□□□□ -0.88
VPS13D-204ENST00000469054 IGKV1-33P01594 117 aa9.57□□□□□ -0.88
VPS13D-204ENST00000469054 SNRNP70P08621 437 aaKnown RBP9.57□□□□□ -0.88
VPS13D-204ENST00000469054 OR5H8P0DN80 308 aa9.57□□□□□ -0.88
VPS13D-204ENST00000469054 CD1BP29016 333 aa9.57□□□□□ -0.88
VPS13D-204ENST00000469054 TNFSF8P32971 234 aa9.57□□□□□ -0.88
VPS13D-204ENST00000469054 GPR12P47775 334 aa9.57□□□□□ -0.88
VPS13D-204ENST00000469054 RELBQ01201 579 aa9.57□□□□□ -0.88
VPS13D-204ENST00000469054 RPL39P5Q59GN2 51 aa9.57□□□□□ -0.88
VPS13D-204ENST00000469054 OR5AP2Q8NGF4 316 aa9.57□□□□□ -0.88
VPS13D-204ENST00000469054 NABP2Q9BQ15 211 aa9.57□□□□□ -0.88
VPS13D-204ENST00000469054 MRPL20Q9BYC9 149 aaKnown RBP9.57□□□□□ -0.88
VPS13D-204ENST00000469054 NECAP2Q9NVZ3 263 aa9.57□□□□□ -0.88
VPS13D-204ENST00000469054 RABL2AQ9UBK7 228 aaPredicted RBP9.57□□□□□ -0.88
VPS13D-204ENST00000469054 RABL2BQ9UNT1 228 aa9.57□□□□□ -0.88
VPS13D-204ENST00000469054 OR2W1Q9Y3N9 320 aa9.57□□□□□ -0.88
VPS13D-204ENST00000469054 ZNF736B4DX44 427 aaPredicted RBP9.56□□□□□ -0.88
VPS13D-204ENST00000469054 PROP1O75360 226 aa9.56□□□□□ -0.88
VPS13D-204ENST00000469054 TUSC2O75896 110 aa9.56□□□□□ -0.88
VPS13D-204ENST00000469054 TSPAN9O75954 239 aa9.56□□□□□ -0.88
VPS13D-204ENST00000469054 OR2F2O95006 317 aa9.56□□□□□ -0.88
VPS13D-204ENST00000469054 NDUFA7O95182 113 aa9.56□□□□□ -0.88
VPS13D-204ENST00000469054 CT45A6P0DMU7 189 aa9.56□□□□□ -0.88
VPS13D-204ENST00000469054 CT45A5P0DMU8 189 aa9.56□□□□□ -0.88
VPS13D-204ENST00000469054 CT45A7P0DMV0 189 aa9.56□□□□□ -0.88
VPS13D-204ENST00000469054 TMEM11P17152 192 aa9.56□□□□□ -0.88
VPS13D-204ENST00000469054 LUMP51884 338 aaPredicted RBP9.56□□□□□ -0.88
VPS13D-204ENST00000469054 TAS2R46P59540 309 aa9.56□□□□□ -0.88
VPS13D-204ENST00000469054 MRPS10P82664 201 aaKnown RBP9.56□□□□□ -0.88
VPS13D-204ENST00000469054 FOXL1Q12952 345 aa9.56□□□□□ -0.88
VPS13D-204ENST00000469054 LSAMPQ13449 338 aa9.56□□□□□ -0.88
VPS13D-204ENST00000469054 IL18Q14116 193 aa9.56□□□□□ -0.88
VPS13D-204ENST00000469054 EBI3Q14213 229 aa9.56□□□□□ -0.88
VPS13D-204ENST00000469054 HES1Q14469 280 aa9.56□□□□□ -0.88
VPS13D-204ENST00000469054 HNF4GQ14541 408 aa9.56□□□□□ -0.88
VPS13D-204ENST00000469054 CDK10Q15131 360 aa9.56□□□□□ -0.88
VPS13D-204ENST00000469054 FBLN7Q53RD9 439 aa9.56□□□□□ -0.88
VPS13D-204ENST00000469054 PYHIN1Q6K0P9 492 aa9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms