RNA–Protein interactions for RNA: ENST00000468792.1

COL6A3-208, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 329 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-208ENST00000468792 EWSR1Q01844 656 aaKnown RBP eCLIP6.34□□□□□ -1.39
COL6A3-208ENST00000468792 Q3ZCU0 254 aa6.34□□□□□ -1.39
COL6A3-208ENST00000468792 MORN2Q502X0 79 aa6.34□□□□□ -1.39
COL6A3-208ENST00000468792 CXorf66Q5JRM2 361 aaPredicted RBP6.34□□□□□ -1.39
COL6A3-208ENST00000468792 FAM74A1Q5RGS3 127 aa6.34□□□□□ -1.39
COL6A3-208ENST00000468792 NCMAPQ5T1S8 102 aa6.34□□□□□ -1.39
COL6A3-208ENST00000468792 FOXRED2Q8IWF2 684 aa6.34□□□□□ -1.39
COL6A3-208ENST00000468792 C1orf87Q8N0U7 546 aa6.34□□□□□ -1.39
COL6A3-208ENST00000468792 SPAG16Q8N0X2 631 aa6.34□□□□□ -1.39
COL6A3-208ENST00000468792 FGFRL1Q8N441 504 aa6.34□□□□□ -1.39
COL6A3-208ENST00000468792 OR51H1Q8NH63 302 aa6.34□□□□□ -1.39
COL6A3-208ENST00000468792 MRGPRDQ8TDS7 321 aa6.34□□□□□ -1.39
COL6A3-208ENST00000468792 PCNPQ8WW12 178 aaKnown RBP6.34□□□□□ -1.39
COL6A3-208ENST00000468792 TSNAXQ99598 290 aaKnown RBP6.34□□□□□ -1.39
COL6A3-208ENST00000468792 PARD6GQ9BYG4 376 aaPredicted RBP6.34□□□□□ -1.39
COL6A3-208ENST00000468792 EGLN1Q9GZT9 426 aa6.34□□□□□ -1.39
COL6A3-208ENST00000468792 ESRP2Q9H6T0 727 aaKnown RBP6.34□□□□□ -1.39
COL6A3-208ENST00000468792 ZNF665Q9H7R5 613 aa6.34□□□□□ -1.39
COL6A3-208ENST00000468792 OR2S2Q9NQN1 319 aa6.34□□□□□ -1.39
COL6A3-208ENST00000468792 TAS2R3Q9NYW6 316 aa6.34□□□□□ -1.39
COL6A3-208ENST00000468792 PPP1R3CQ9UQK1 317 aa6.34□□□□□ -1.39
COL6A3-208ENST00000468792 STRAPQ9Y3F4 350 aaKnown RBP6.34□□□□□ -1.39
COL6A3-208ENST00000468792 CACNA1DQ01668 2161 aa6.34□□□□□ -1.4
COL6A3-208ENST00000468792 ARID1AO14497 2285 aa6.33□□□□□ -1.4
COL6A3-208ENST00000468792 TRAV39A0A0B4J263 110 aa6.33□□□□□ -1.4
COL6A3-208ENST00000468792 TRAV38-1A0A0B4J264 116 aa6.33□□□□□ -1.4
COL6A3-208ENST00000468792 IGHV3-64DA0A0J9YX35 117 aa6.33□□□□□ -1.4
COL6A3-208ENST00000468792 KBTBD11-OT1A0A1B0GTJ5 212 aa6.33□□□□□ -1.4
COL6A3-208ENST00000468792 ZNF729A6NN14 1252 aaPredicted RBP6.33□□□□□ -1.4
COL6A3-208ENST00000468792 WRBO00258 174 aa6.33□□□□□ -1.4
COL6A3-208ENST00000468792 RAB29O14966 203 aa6.33□□□□□ -1.4
COL6A3-208ENST00000468792 SIGLEC5O15389 551 aa6.33□□□□□ -1.4
COL6A3-208ENST00000468792 TXNL1O43396 289 aa6.33□□□□□ -1.4
COL6A3-208ENST00000468792 TNFSF12O43508 249 aa6.33□□□□□ -1.4
COL6A3-208ENST00000468792 SYNGR2O43760 224 aa6.33□□□□□ -1.4
COL6A3-208ENST00000468792 CHST1O43916 411 aa6.33□□□□□ -1.4
COL6A3-208ENST00000468792 MED6O75586 246 aa6.33□□□□□ -1.4
COL6A3-208ENST00000468792 DFFBO76075 338 aa6.33□□□□□ -1.4
COL6A3-208ENST00000468792 CLDN14O95500 239 aa6.33□□□□□ -1.4
COL6A3-208ENST00000468792 IGKV1-5P01602 117 aa6.33□□□□□ -1.4
COL6A3-208ENST00000468792 OR4A8P0C604 315 aa6.33□□□□□ -1.4
COL6A3-208ENST00000468792 OR8U8P0C7N1 319 aa6.33□□□□□ -1.4
COL6A3-208ENST00000468792 IRF2P14316 349 aa6.33□□□□□ -1.4
COL6A3-208ENST00000468792 CHRNB4P30926 498 aa6.33□□□□□ -1.4
COL6A3-208ENST00000468792 KIR2DS2P43631 304 aa6.33□□□□□ -1.4
COL6A3-208ENST00000468792 SULT1A1P50225 295 aa6.33□□□□□ -1.4
COL6A3-208ENST00000468792 CAV2P51636 162 aa6.33□□□□□ -1.4
COL6A3-208ENST00000468792 LOXL3P58215 753 aa6.33□□□□□ -1.4
COL6A3-208ENST00000468792 MEF2CQ06413 473 aaPredicted RBP6.33□□□□□ -1.4
COL6A3-208ENST00000468792 BSPH1Q075Z2 132 aa6.33□□□□□ -1.4
COL6A3-208ENST00000468792 PJVKQ0ZLH3 352 aa6.33□□□□□ -1.4
COL6A3-208ENST00000468792 MST1LQ2TV78 715 aa6.33□□□□□ -1.4
COL6A3-208ENST00000468792 PDLIM3Q53GG5 364 aaPredicted RBP6.33□□□□□ -1.4
COL6A3-208ENST00000468792 C10orf91Q5T1B1 145 aa6.33□□□□□ -1.4
COL6A3-208ENST00000468792 VHLLQ6RSH7 139 aa6.33□□□□□ -1.4
COL6A3-208ENST00000468792 BTNL8Q6UX41 500 aa6.33□□□□□ -1.4
COL6A3-208ENST00000468792 Q6ZRM9 215 aa6.33□□□□□ -1.4
COL6A3-208ENST00000468792 PRR18Q8N4B5 295 aa6.33□□□□□ -1.4
COL6A3-208ENST00000468792 OR52L2PQ8NGH6 319 aa6.33□□□□□ -1.4
COL6A3-208ENST00000468792 OR1S2Q8NGQ3 325 aa6.33□□□□□ -1.4
COL6A3-208ENST00000468792 RNASE6Q93091 150 aaKnown RBP6.33□□□□□ -1.4
COL6A3-208ENST00000468792 GNPNAT1Q96EK6 184 aaPredicted RBP6.33□□□□□ -1.4
COL6A3-208ENST00000468792 LRRC46Q96FV0 321 aa6.33□□□□□ -1.4
COL6A3-208ENST00000468792 PARP12Q9H0J9 701 aaKnown RBP6.33□□□□□ -1.4
COL6A3-208ENST00000468792 OR2D2Q9H210 308 aa6.33□□□□□ -1.4
COL6A3-208ENST00000468792 MS4A5Q9H3V2 200 aa6.33□□□□□ -1.4
COL6A3-208ENST00000468792 SMDT1Q9H4I9 107 aa6.33□□□□□ -1.4
COL6A3-208ENST00000468792 WFDC1Q9HC57 220 aa6.33□□□□□ -1.4
COL6A3-208ENST00000468792 CLN8Q9UBY8 286 aa6.33□□□□□ -1.4
COL6A3-208ENST00000468792 HSPB7Q9UBY9 170 aa6.33□□□□□ -1.4
COL6A3-208ENST00000468792 KCNS2Q9ULS6 477 aa6.33□□□□□ -1.4
COL6A3-208ENST00000468792 RAXQ9Y2V3 346 aa6.33□□□□□ -1.4
COL6A3-208ENST00000468792 KIAA2026Q5HYC2 2103 aa6.32□□□□□ -1.4
COL6A3-208ENST00000468792 ADGRG4Q8IZF6 3080 aa6.32□□□□□ -1.4
COL6A3-208ENST00000468792 TRGV10A0A0A0MS01 117 aa6.32□□□□□ -1.4
COL6A3-208ENST00000468792 A0A0G2JRQ6 117 aa6.32□□□□□ -1.4
COL6A3-208ENST00000468792 A0A1B0GW64 132 aa6.32□□□□□ -1.4
COL6A3-208ENST00000468792 IGSF23A1L1A6 192 aa6.32□□□□□ -1.4
COL6A3-208ENST00000468792 TMEM218A2RU14 115 aa6.32□□□□□ -1.4
COL6A3-208ENST00000468792 ZNF705EA8MWA4 302 aaPredicted RBP6.32□□□□□ -1.4
COL6A3-208ENST00000468792 SHISA9B4DS77 424 aa6.32□□□□□ -1.4
COL6A3-208ENST00000468792 B8ZZF3 427 aa6.32□□□□□ -1.4
COL6A3-208ENST00000468792 B9A039 149 aa6.32□□□□□ -1.4
COL6A3-208ENST00000468792 LGALS8O00214 317 aa6.32□□□□□ -1.4
COL6A3-208ENST00000468792 TNFRSF13BO14836 293 aaPredicted RBP6.32□□□□□ -1.4
COL6A3-208ENST00000468792 NDUFA2O43678 99 aa6.32□□□□□ -1.4
COL6A3-208ENST00000468792 SSSCA1O60232 199 aa6.32□□□□□ -1.4
COL6A3-208ENST00000468792 ZG16O60844 167 aa6.32□□□□□ -1.4
COL6A3-208ENST00000468792 TMEM50AO95807 157 aa6.32□□□□□ -1.4
COL6A3-208ENST00000468792 CRYZL1O95825 349 aa6.32□□□□□ -1.4
COL6A3-208ENST00000468792 CLDN1O95832 211 aa6.32□□□□□ -1.4
COL6A3-208ENST00000468792 APOBEC3AP31941 199 aaPredicted RBP6.32□□□□□ -1.4
COL6A3-208ENST00000468792 DUTP33316 252 aaKnown RBP6.32□□□□□ -1.4
COL6A3-208ENST00000468792 SSTR5P35346 364 aa6.32□□□□□ -1.4
COL6A3-208ENST00000468792 PPP1CCP36873 323 aaKnown RBP6.32□□□□□ -1.4
COL6A3-208ENST00000468792 LPAR6P43657 344 aa6.32□□□□□ -1.4
COL6A3-208ENST00000468792 AKR1C2P52895 323 aa6.32□□□□□ -1.4
COL6A3-208ENST00000468792 BRWD1-AS2P59051 145 aa6.32□□□□□ -1.4
COL6A3-208ENST00000468792 NHLH2Q02577 135 aa6.32□□□□□ -1.4
COL6A3-208ENST00000468792 C17orf58Q2M2W7 97 aa6.32□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms