RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 NUBP2Q9Y5Y2 271 aa10.28□□□□□ -0.76
HMGB3-204ENST00000448905 A3GALT2U3KPV4 340 aa10.28□□□□□ -0.76
HMGB3-204ENST00000448905 SAA2-SAA4A0A096LPE2 208 aa10.27□□□□□ -0.77
HMGB3-204ENST00000448905 MAGEA13PA6NCF6 341 aa10.27□□□□□ -0.77
HMGB3-204ENST00000448905 EFCAB10A6NFE3 127 aa10.27□□□□□ -0.77
HMGB3-204ENST00000448905 LDLRAD4O15165 306 aa10.27□□□□□ -0.77
HMGB3-204ENST00000448905 LALBAP00709 142 aa10.27□□□□□ -0.77
HMGB3-204ENST00000448905 CD1AP06126 327 aa10.27□□□□□ -0.77
HMGB3-204ENST00000448905 SAA2P0DJI9 122 aaPredicted RBP10.27□□□□□ -0.77
HMGB3-204ENST00000448905 CELP19835 753 aa10.27□□□□□ -0.77
HMGB3-204ENST00000448905 CRIP2P52943 208 aaPredicted RBP10.27□□□□□ -0.77
HMGB3-204ENST00000448905 ST3GAL4Q11206 333 aa10.27□□□□□ -0.77
HMGB3-204ENST00000448905 C6orf141Q5SZD1 244 aa10.27□□□□□ -0.77
HMGB3-204ENST00000448905 SIGIRRQ6IA17 410 aa10.27□□□□□ -0.77
HMGB3-204ENST00000448905 UNQ5815/PRO19632Q6UWF5 114 aa10.27□□□□□ -0.77
HMGB3-204ENST00000448905 SGPP2Q8IWX5 399 aa10.27□□□□□ -0.77
HMGB3-204ENST00000448905 ZFP41Q8N8Y5 198 aa10.27□□□□□ -0.77
HMGB3-204ENST00000448905 ARPC1AQ92747 370 aa10.27□□□□□ -0.77
HMGB3-204ENST00000448905 FAM46BQ96A09 425 aa10.27□□□□□ -0.77
HMGB3-204ENST00000448905 PGLYRP3Q96LB9 341 aa10.27□□□□□ -0.77
HMGB3-204ENST00000448905 DERL3Q96Q80 235 aa10.27□□□□□ -0.77
HMGB3-204ENST00000448905 FAAP24Q9BTP7 215 aa10.27□□□□□ -0.77
HMGB3-204ENST00000448905 ALX4Q9H161 411 aaPredicted RBP10.27□□□□□ -0.77
HMGB3-204ENST00000448905 FBXL15Q9H469 300 aa10.27□□□□□ -0.77
HMGB3-204ENST00000448905 SLC23A1Q9UHI7 598 aa10.27□□□□□ -0.77
HMGB3-204ENST00000448905 STUB1Q9UNE7 303 aa10.27□□□□□ -0.77
HMGB3-204ENST00000448905 PNMA8CA0A1B0GUJ8 204 aa10.26□□□□□ -0.77
HMGB3-204ENST00000448905 TFAP2AP05549 437 aa10.26□□□□□ -0.77
HMGB3-204ENST00000448905 TATDN3Q17R31 274 aa10.26□□□□□ -0.77
HMGB3-204ENST00000448905 GLT8D1Q68CQ7 371 aa10.26□□□□□ -0.77
HMGB3-204ENST00000448905 FAM131AQ6UXB0 335 aa10.26□□□□□ -0.77
HMGB3-204ENST00000448905 MS4A15Q8N5U1 240 aa10.26□□□□□ -0.77
HMGB3-204ENST00000448905 KCNG3Q8TAE7 436 aa10.26□□□□□ -0.77
HMGB3-204ENST00000448905 SETD6Q8TBK2 473 aa10.26□□□□□ -0.77
HMGB3-204ENST00000448905 CYGBQ8WWM9 190 aa10.26□□□□□ -0.77
HMGB3-204ENST00000448905 MS4A10Q96PG2 267 aa10.26□□□□□ -0.77
HMGB3-204ENST00000448905 CITED4Q96RK1 184 aa10.26□□□□□ -0.77
HMGB3-204ENST00000448905 RANGRFQ9HD47 186 aaPredicted RBP10.26□□□□□ -0.77
HMGB3-204ENST00000448905 ZNF355PQ9NSJ1 428 aa10.26□□□□□ -0.77
HMGB3-204ENST00000448905 PLEKHJ1Q9NW61 149 aa10.26□□□□□ -0.77
HMGB3-204ENST00000448905 CNOT2Q9NZN8 540 aaKnown RBP10.26□□□□□ -0.77
HMGB3-204ENST00000448905 MGAT4AQ9UM21 535 aa10.26□□□□□ -0.77
HMGB3-204ENST00000448905 WASHC3Q9Y3C0 194 aa10.26□□□□□ -0.77
HMGB3-204ENST00000448905 IGHV4OR15-8A0A075B7B6 117 aa10.25□□□□□ -0.77
HMGB3-204ENST00000448905 A0A087WW49 117 aa10.25□□□□□ -0.77
HMGB3-204ENST00000448905 A0A0G2JLM5 398 aa10.25□□□□□ -0.77
HMGB3-204ENST00000448905 FCN1O00602 326 aa10.25□□□□□ -0.77
HMGB3-204ENST00000448905 ITGB1BP1O14713 200 aa10.25□□□□□ -0.77
HMGB3-204ENST00000448905 SLC22A1O15245 554 aa10.25□□□□□ -0.77
HMGB3-204ENST00000448905 HSPA12AO43301 675 aa10.25□□□□□ -0.77
HMGB3-204ENST00000448905 SOX15O60248 233 aa10.25□□□□□ -0.77
HMGB3-204ENST00000448905 IGHV3-11P01762 117 aa10.25□□□□□ -0.77
HMGB3-204ENST00000448905 CT45A6P0DMU7 189 aa10.25□□□□□ -0.77
HMGB3-204ENST00000448905 CT45A5P0DMU8 189 aa10.25□□□□□ -0.77
HMGB3-204ENST00000448905 CT45A7P0DMV0 189 aa10.25□□□□□ -0.77
HMGB3-204ENST00000448905 ZP3P21754 424 aa10.25□□□□□ -0.77
HMGB3-204ENST00000448905 ZBTB25P24278 435 aa10.25□□□□□ -0.77
HMGB3-204ENST00000448905 TPPP2P59282 170 aa10.25□□□□□ -0.77
HMGB3-204ENST00000448905 HMGN3Q15651 99 aa10.25□□□□□ -0.77
HMGB3-204ENST00000448905 SRSF7Q16629 238 aaKnown RBP eCLIP10.25□□□□□ -0.77
HMGB3-204ENST00000448905 LRRC36Q1X8D7 754 aa10.25□□□□□ -0.77
HMGB3-204ENST00000448905 LYPD6Q86Y78 171 aa10.25□□□□□ -0.77
HMGB3-204ENST00000448905 ZNF485Q8NCK3 441 aa10.25□□□□□ -0.77
HMGB3-204ENST00000448905 LFNGQ8NES3 379 aa10.25□□□□□ -0.77
HMGB3-204ENST00000448905 EDARADDQ8WWZ3 215 aa10.25□□□□□ -0.77
HMGB3-204ENST00000448905 GGHQ92820 318 aa10.25□□□□□ -0.77
HMGB3-204ENST00000448905 ISOC1Q96CN7 298 aa10.25□□□□□ -0.77
HMGB3-204ENST00000448905 RHOVQ96L33 236 aa10.25□□□□□ -0.77
HMGB3-204ENST00000448905 CLCC1Q96S66 551 aa10.25□□□□□ -0.77
HMGB3-204ENST00000448905 TSNAXQ99598 290 aaKnown RBP10.25□□□□□ -0.77
HMGB3-204ENST00000448905 SULT4A1Q9BR01 284 aa10.25□□□□□ -0.77
HMGB3-204ENST00000448905 C8orf4Q9NR00 106 aa10.25□□□□□ -0.77
HMGB3-204ENST00000448905 TPSG1Q9NRR2 321 aa10.25□□□□□ -0.77
HMGB3-204ENST00000448905 METTL1Q9UBP6 276 aaKnown RBP10.25□□□□□ -0.77
HMGB3-204ENST00000448905 C13orf42A0A1B0GVH6 325 aa10.24□□□□□ -0.77
HMGB3-204ENST00000448905 TRIM64CA6NLI5 447 aa10.24□□□□□ -0.77
HMGB3-204ENST00000448905 H0Y980 276 aa10.24□□□□□ -0.77
HMGB3-204ENST00000448905 MYL12BO14950 172 aa10.24□□□□□ -0.77
HMGB3-204ENST00000448905 ST8SIA5O15466 376 aa10.24□□□□□ -0.77
HMGB3-204ENST00000448905 TRGV3P03979 118 aa10.24□□□□□ -0.77
HMGB3-204ENST00000448905 EGR2P11161 476 aaPredicted RBP10.24□□□□□ -0.77
HMGB3-204ENST00000448905 CPEP16870 476 aa10.24□□□□□ -0.77
HMGB3-204ENST00000448905 CEACAM6P40199 344 aa10.24□□□□□ -0.77
HMGB3-204ENST00000448905 WNT4P56705 351 aa10.24□□□□□ -0.77
HMGB3-204ENST00000448905 RPS16P62249 146 aaKnown RBP10.24□□□□□ -0.77
HMGB3-204ENST00000448905 RPS27AP62979 156 aaKnown RBP10.24□□□□□ -0.77
HMGB3-204ENST00000448905 MOGAT2Q3SYC2 334 aa10.24□□□□□ -0.77
HMGB3-204ENST00000448905 RPL39P5Q59GN2 51 aa10.24□□□□□ -0.77
HMGB3-204ENST00000448905 C19orf54Q5BKX5 351 aa10.24□□□□□ -0.77
HMGB3-204ENST00000448905 MOB1BQ7L9L4 216 aa10.24□□□□□ -0.77
HMGB3-204ENST00000448905 C6orf201Q7Z4U5 140 aa10.24□□□□□ -0.77
HMGB3-204ENST00000448905 C5orf24Q7Z6I8 188 aa10.24□□□□□ -0.77
HMGB3-204ENST00000448905 DHRSXQ8N5I4 330 aa10.24□□□□□ -0.77
HMGB3-204ENST00000448905 OR5AN1Q8NGI8 311 aa10.24□□□□□ -0.77
HMGB3-204ENST00000448905 CASTOR1Q8WTX7 329 aa10.24□□□□□ -0.77
HMGB3-204ENST00000448905 RSRP1Q9BUV0 290 aa10.24□□□□□ -0.77
HMGB3-204ENST00000448905 TMEM59Q9BXS4 323 aa10.24□□□□□ -0.77
HMGB3-204ENST00000448905 IFI27L2Q9H2X8 130 aa10.24□□□□□ -0.77
HMGB3-204ENST00000448905 ZNF221Q9UK13 617 aa10.24□□□□□ -0.77
HMGB3-204ENST00000448905 RYR2Q92736 4967 aa10.23□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms