RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 CKLFQ9UBR5 152 aa3.09□□□□□ -1.91
VPS29-202ENST00000447578 SCP2D1Q9UJQ7 156 aa3.09□□□□□ -1.91
VPS29-202ENST00000447578 OR52A1Q9UKL2 312 aa3.09□□□□□ -1.91
VPS29-202ENST00000447578 FBXL3Q9UKT7 428 aa3.09□□□□□ -1.91
VPS29-202ENST00000447578 R4GMQ9 66 aa3.09□□□□□ -1.91
VPS29-202ENST00000447578 PCNX3Q9H6A9 2034 aa3.09□□□□□ -1.92
VPS29-202ENST00000447578 SCN3AQ9NY46 2000 aa3.09□□□□□ -1.92
VPS29-202ENST00000447578 HTTP42858 3142 aa3.08□□□□□ -1.92
VPS29-202ENST00000447578 NUMA1Q14980 2115 aa3.08□□□□□ -1.92
VPS29-202ENST00000447578 MYO7AQ13402 2215 aa3.08□□□□□ -1.92
VPS29-202ENST00000447578 PRRC2BQ5JSZ5 2229 aaKnown RBP3.08□□□□□ -1.92
VPS29-202ENST00000447578 IGLV3-12A0A075B6K2 115 aa3.08□□□□□ -1.92
VPS29-202ENST00000447578 IGHV7-81A0A0B4J1V7 117 aa3.08□□□□□ -1.92
VPS29-202ENST00000447578 IGKV1D-43A0A0B4J1Z2 117 aa3.08□□□□□ -1.92
VPS29-202ENST00000447578 IGHV5-10-1A0A0J9YXX1 117 aa3.08□□□□□ -1.92
VPS29-202ENST00000447578 TMEM269A0A1B0GVZ9 245 aa3.08□□□□□ -1.92
VPS29-202ENST00000447578 A0A1W2PQ72 361 aa3.08□□□□□ -1.92
VPS29-202ENST00000447578 CIB4A0PJX0 185 aa3.08□□□□□ -1.92
VPS29-202ENST00000447578 GGT3PA6NGU5 568 aa3.08□□□□□ -1.92
VPS29-202ENST00000447578 FTCDNL1E5RQL4 147 aa3.08□□□□□ -1.92
VPS29-202ENST00000447578 H7C417 338 aa3.08□□□□□ -1.92
VPS29-202ENST00000447578 SIRPB1O00241 398 aa3.08□□□□□ -1.92
VPS29-202ENST00000447578 TOX3O15405 576 aaPredicted RBP3.08□□□□□ -1.92
VPS29-202ENST00000447578 CREBL2O60519 120 aaPredicted RBP3.08□□□□□ -1.92
VPS29-202ENST00000447578 NOS1APO75052 506 aaPredicted RBP3.08□□□□□ -1.92
VPS29-202ENST00000447578 SRSF10O75494 262 aaKnown RBP3.08□□□□□ -1.92
VPS29-202ENST00000447578 OR2J2O76002 312 aa3.08□□□□□ -1.92
VPS29-202ENST00000447578 NDUFB6O95139 128 aa3.08□□□□□ -1.92
VPS29-202ENST00000447578 TGM6O95932 706 aa3.08□□□□□ -1.92
VPS29-202ENST00000447578 IL5P05113 134 aa3.08□□□□□ -1.92
VPS29-202ENST00000447578 S100A9P06702 114 aaKnown RBP3.08□□□□□ -1.92
VPS29-202ENST00000447578 CD2P06729 351 aa3.08□□□□□ -1.92
VPS29-202ENST00000447578 AKAIN1P0CW23 69 aa3.08□□□□□ -1.92
VPS29-202ENST00000447578 GTF2F2P13984 249 aa3.08□□□□□ -1.92
VPS29-202ENST00000447578 FOLR2P14207 255 aa3.08□□□□□ -1.92
VPS29-202ENST00000447578 PRKACAP17612 351 aa3.08□□□□□ -1.92
VPS29-202ENST00000447578 IGFBP3P17936 291 aaPredicted RBP3.08□□□□□ -1.92
VPS29-202ENST00000447578 CSRP1P21291 193 aaKnown RBP3.08□□□□□ -1.92
VPS29-202ENST00000447578 TUBG1P23258 451 aa3.08□□□□□ -1.92
VPS29-202ENST00000447578 PRSS3P35030 304 aa3.08□□□□□ -1.92
VPS29-202ENST00000447578 MDH2P40926 338 aaKnown RBP3.08□□□□□ -1.92
VPS29-202ENST00000447578 GLP1RP43220 463 aa3.08□□□□□ -1.92
VPS29-202ENST00000447578 KIR2DS4P43632 304 aa3.08□□□□□ -1.92
VPS29-202ENST00000447578 TFPI2P48307 235 aa3.08□□□□□ -1.92
VPS29-202ENST00000447578 CARD18P57730 90 aa3.08□□□□□ -1.92
VPS29-202ENST00000447578 TSPAN5P62079 268 aa3.08□□□□□ -1.92
VPS29-202ENST00000447578 RAB11AP62491 216 aa3.08□□□□□ -1.92
VPS29-202ENST00000447578 TGFBR3Q03167 851 aa3.08□□□□□ -1.92
VPS29-202ENST00000447578 LGALSLQ3ZCW2 172 aaPredicted RBP3.08□□□□□ -1.92
VPS29-202ENST00000447578 TEX30Q5JUR7 227 aa3.08□□□□□ -1.92
VPS29-202ENST00000447578 THOC7Q6I9Y2 204 aaKnown RBP3.08□□□□□ -1.92
VPS29-202ENST00000447578 MOB1BQ7L9L4 216 aa3.08□□□□□ -1.92
VPS29-202ENST00000447578 DCXRQ7Z4W1 244 aa3.08□□□□□ -1.92
VPS29-202ENST00000447578 WDFY1Q8IWB7 410 aa3.08□□□□□ -1.92
VPS29-202ENST00000447578 JAGN1Q8N5M9 183 aa3.08□□□□□ -1.92
VPS29-202ENST00000447578 CCDC71LQ8N9Z2 235 aa3.08□□□□□ -1.92
VPS29-202ENST00000447578 APCDD1LQ8NCL9 501 aa3.08□□□□□ -1.92
VPS29-202ENST00000447578 SLC26A10Q8NG04 563 aa3.08□□□□□ -1.92
VPS29-202ENST00000447578 OR10G3Q8NGC4 313 aa3.08□□□□□ -1.92
VPS29-202ENST00000447578 OR51A2Q8NGJ7 313 aa3.08□□□□□ -1.92
VPS29-202ENST00000447578 OR4C16Q8NGL9 310 aa3.08□□□□□ -1.92
VPS29-202ENST00000447578 OR1S2Q8NGQ3 325 aa3.08□□□□□ -1.92
VPS29-202ENST00000447578 OR2T35Q8NGX2 323 aa3.08□□□□□ -1.92
VPS29-202ENST00000447578 OR8S1Q8NH09 359 aa3.08□□□□□ -1.92
VPS29-202ENST00000447578 CHCHD10Q8WYQ3 142 aaPredicted RBP3.08□□□□□ -1.92
VPS29-202ENST00000447578 C11orf40Q8WZ69 217 aa3.08□□□□□ -1.92
VPS29-202ENST00000447578 CLDN23Q96B33 292 aa3.08□□□□□ -1.92
VPS29-202ENST00000447578 FAM3DQ96BQ1 224 aa3.08□□□□□ -1.92
VPS29-202ENST00000447578 SLC25A44Q96H78 314 aaPredicted RBP3.08□□□□□ -1.92
VPS29-202ENST00000447578 VSIG2Q96IQ7 327 aa3.08□□□□□ -1.92
VPS29-202ENST00000447578 ZNF414Q96IQ9 312 aa3.08□□□□□ -1.92
VPS29-202ENST00000447578 ARL5BQ96KC2 179 aa3.08□□□□□ -1.92
VPS29-202ENST00000447578 GINS4Q9BRT9 223 aa3.08□□□□□ -1.92
VPS29-202ENST00000447578 METTL17Q9H7H0 456 aaPredicted RBP3.08□□□□□ -1.92
VPS29-202ENST00000447578 TUBG2Q9NRH3 451 aa3.08□□□□□ -1.92
VPS29-202ENST00000447578 SDHAF3Q9NRP4 125 aa3.08□□□□□ -1.92
VPS29-202ENST00000447578 CA10Q9NS85 328 aa3.08□□□□□ -1.92
VPS29-202ENST00000447578 MED29Q9NX70 200 aa3.08□□□□□ -1.92
VPS29-202ENST00000447578 TAS2R8Q9NYW2 309 aa3.08□□□□□ -1.92
VPS29-202ENST00000447578 MTFP1Q9UDX5 166 aa3.08□□□□□ -1.92
VPS29-202ENST00000447578 KIF25Q9UIL4 384 aa3.08□□□□□ -1.92
VPS29-202ENST00000447578 HHLA2Q9UM44 414 aa3.08□□□□□ -1.92
VPS29-202ENST00000447578 POLR1DQ9Y2S0 133 aa3.08□□□□□ -1.92
VPS29-202ENST00000447578 DOCK9Q9BZ29 2069 aa3.08□□□□□ -1.92
VPS29-202ENST00000447578 RALGAPA1Q6GYQ0 2036 aa3.07□□□□□ -1.92
VPS29-202ENST00000447578 HEATR5BQ9P2D3 2071 aa3.07□□□□□ -1.92
VPS29-202ENST00000447578 KBTBD11-OT1A0A1B0GTJ5 212 aa3.07□□□□□ -1.92
VPS29-202ENST00000447578 LOC107986453A0A1B0GWG9 222 aa3.07□□□□□ -1.92
VPS29-202ENST00000447578 ZNF726A6NNF4 738 aa3.07□□□□□ -1.92
VPS29-202ENST00000447578 SNRPGP15A8MWD9 76 aa3.07□□□□□ -1.92
VPS29-202ENST00000447578 SLC22A5O76082 557 aa3.07□□□□□ -1.92
VPS29-202ENST00000447578 AQP8O94778 261 aa3.07□□□□□ -1.92
VPS29-202ENST00000447578 SNAPINO95295 136 aa3.07□□□□□ -1.92
VPS29-202ENST00000447578 SIX6O95475 246 aa3.07□□□□□ -1.92
VPS29-202ENST00000447578 RAB3DO95716 219 aa3.07□□□□□ -1.92
VPS29-202ENST00000447578 ISG15P05161 165 aa3.07□□□□□ -1.92
VPS29-202ENST00000447578 CSN2P05814 226 aa3.07□□□□□ -1.92
VPS29-202ENST00000447578 GIPP09681 153 aaPredicted RBP3.07□□□□□ -1.92
VPS29-202ENST00000447578 UBCP0CG48 685 aaKnown RBP3.07□□□□□ -1.92
VPS29-202ENST00000447578 ZNF35P13682 527 aa3.07□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms