RNA–Protein interactions for RNA: ENST00000428026.6

PTPRU-204, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 1 (best) BASIC

Gene PTPRU, Length 5,550 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-204ENST00000428026 RASL11BQ9BPW5 248 aa12.58□□□□□ -0.4
PTPRU-204ENST00000428026 RNF122Q9H9V4 155 aa12.58□□□□□ -0.4
PTPRU-204ENST00000428026 EP300Q09472 2414 aaPredicted RBP12.58□□□□□ -0.4
PTPRU-204ENST00000428026 CDX1P47902 265 aaPredicted RBP12.58□□□□□ -0.4
PTPRU-204ENST00000428026 SMDT1Q9H4I9 107 aa12.58□□□□□ -0.4
PTPRU-204ENST00000428026 IL36RNQ9UBH0 155 aa12.58□□□□□ -0.4
PTPRU-204ENST00000428026 PILRBQ9UKJ0 227 aa12.58□□□□□ -0.4
PTPRU-204ENST00000428026 AHCTF1Q8WYP5 2266 aa12.58□□□□□ -0.4
PTPRU-204ENST00000428026 TRPM7Q96QT4 1865 aa12.58□□□□□ -0.4
PTPRU-204ENST00000428026 M0R3E3 92 aa12.58□□□□□ -0.4
PTPRU-204ENST00000428026 WISP3O95389 354 aaPredicted RBP12.58□□□□□ -0.4
PTPRU-204ENST00000428026 HSPB1P04792 205 aaKnown RBP12.58□□□□□ -0.4
PTPRU-204ENST00000428026 TRGC1P0CF51 173 aa12.58□□□□□ -0.4
PTPRU-204ENST00000428026 FOXL2P58012 376 aa12.58□□□□□ -0.4
PTPRU-204ENST00000428026 MEF2BQ02080 365 aaPredicted RBP12.58□□□□□ -0.4
PTPRU-204ENST00000428026 HIKESHIQ53FT3 197 aa12.58□□□□□ -0.4
PTPRU-204ENST00000428026 TPRX1Q8N7U7 411 aa12.58□□□□□ -0.4
PTPRU-204ENST00000428026 RND1Q92730 232 aa12.58□□□□□ -0.4
PTPRU-204ENST00000428026 HARBI1Q96MB7 349 aa12.58□□□□□ -0.4
PTPRU-204ENST00000428026 GPR132Q9UNW8 380 aa12.58□□□□□ -0.4
PTPRU-204ENST00000428026 AMMECR1Q9Y4X0 333 aaPredicted RBP12.58□□□□□ -0.4
PTPRU-204ENST00000428026 GCM2O75603 506 aaPredicted RBP12.57□□□□□ -0.4
PTPRU-204ENST00000428026 PIPOXQ9P0Z9 390 aa12.57□□□□□ -0.4
PTPRU-204ENST00000428026 IL19Q9UHD0 177 aa12.57□□□□□ -0.4
PTPRU-204ENST00000428026 TUBD1Q9UJT1 453 aa12.57□□□□□ -0.4
PTPRU-204ENST00000428026 DMRT1Q9Y5R6 373 aa12.57□□□□□ -0.4
PTPRU-204ENST00000428026 VAX1Q5SQQ9 334 aa12.57□□□□□ -0.4
PTPRU-204ENST00000428026 OR2V2Q96R30 315 aa12.57□□□□□ -0.4
PTPRU-204ENST00000428026 PXMP4Q9Y6I8 212 aa12.57□□□□□ -0.4
PTPRU-204ENST00000428026 UNC13CQ8NB66 2214 aa12.57□□□□□ -0.4
PTPRU-204ENST00000428026 NPIPB8E9PQR5 432 aa12.57□□□□□ -0.4
PTPRU-204ENST00000428026 REG1BP48304 166 aa12.57□□□□□ -0.4
PTPRU-204ENST00000428026 RND3P61587 244 aa12.57□□□□□ -0.4
PTPRU-204ENST00000428026 KIAA1644Q3SXP7 199 aa12.57□□□□□ -0.4
PTPRU-204ENST00000428026 SLC25A45Q8N413 288 aa12.57□□□□□ -0.4
PTPRU-204ENST00000428026 ZNF502Q8TBZ5 544 aa12.57□□□□□ -0.4
PTPRU-204ENST00000428026 GRIFINA4D1Z8 144 aa12.57□□□□□ -0.4
PTPRU-204ENST00000428026 RBM11P57052 281 aaKnown RBP12.57□□□□□ -0.4
PTPRU-204ENST00000428026 SERF2P84101 59 aa12.57□□□□□ -0.4
PTPRU-204ENST00000428026 GBGT1Q8N5D6 347 aa12.57□□□□□ -0.4
PTPRU-204ENST00000428026 OR4B1Q8NGF8 309 aa12.57□□□□□ -0.4
PTPRU-204ENST00000428026 FBLIM1Q8WUP2 373 aa12.57□□□□□ -0.4
PTPRU-204ENST00000428026 MRPL18Q9H0U6 180 aaKnown RBP12.57□□□□□ -0.4
PTPRU-204ENST00000428026 LOC107984156A0A0G2JMH3 177 aa12.56□□□□□ -0.4
PTPRU-204ENST00000428026 SYNGR1O43759 233 aa12.56□□□□□ -0.4
PTPRU-204ENST00000428026 LAIR2Q6ISS4 152 aa12.56□□□□□ -0.4
PTPRU-204ENST00000428026 ARL17AQ8IVW1 177 aa12.56□□□□□ -0.4
PTPRU-204ENST00000428026 SNRNP40Q96DI7 357 aaKnown RBP12.56□□□□□ -0.4
PTPRU-204ENST00000428026 SCN3AQ9NY46 2000 aa12.56□□□□□ -0.4
PTPRU-204ENST00000428026 TRAV38-1A0A0B4J264 116 aa12.56□□□□□ -0.4
PTPRU-204ENST00000428026 J3QT63 122 aa12.56□□□□□ -0.4
PTPRU-204ENST00000428026 KLF7O75840 302 aaPredicted RBP12.56□□□□□ -0.4
PTPRU-204ENST00000428026 CD82P27701 267 aa12.56□□□□□ -0.4
PTPRU-204ENST00000428026 FXYD3Q14802 87 aa12.56□□□□□ -0.4
PTPRU-204ENST00000428026 ZNF385AQ96PM9 386 aaKnown RBP12.56□□□□□ -0.4
PTPRU-204ENST00000428026 SLC25A33Q9BSK2 321 aa12.56□□□□□ -0.4
PTPRU-204ENST00000428026 PAXXQ9BUH6 204 aa12.56□□□□□ -0.4
PTPRU-204ENST00000428026 J3QR06 171 aa12.56□□□□□ -0.4
PTPRU-204ENST00000428026 CLDN18P56856 261 aa12.56□□□□□ -0.4
PTPRU-204ENST00000428026 OR52M1Q8NGK5 317 aa12.56□□□□□ -0.4
PTPRU-204ENST00000428026 PTX4Q96A99 478 aa12.56□□□□□ -0.4
PTPRU-204ENST00000428026 GPR35Q9HC97 309 aa12.56□□□□□ -0.4
PTPRU-204ENST00000428026 TMEM38BQ9NVV0 291 aa12.56□□□□□ -0.4
PTPRU-204ENST00000428026 PRNDQ9UKY0 176 aa12.56□□□□□ -0.4
PTPRU-204ENST00000428026 FAM90A27PA6NNH2 459 aa12.56□□□□□ -0.4
PTPRU-204ENST00000428026 CEACAM3P40198 252 aa12.56□□□□□ -0.4
PTPRU-204ENST00000428026 UQCR10Q9UDW1 63 aa12.56□□□□□ -0.4
PTPRU-204ENST00000428026 PLAUP00749 431 aa12.56□□□□□ -0.4
PTPRU-204ENST00000428026 CD74P04233 296 aa12.56□□□□□ -0.4
PTPRU-204ENST00000428026 CCL3P10147 92 aa12.56□□□□□ -0.4
PTPRU-204ENST00000428026 PRSS53Q2L4Q9 553 aa12.56□□□□□ -0.4
PTPRU-204ENST00000428026 IBA57Q5T440 356 aaKnown RBP12.56□□□□□ -0.4
PTPRU-204ENST00000428026 SCTP09683 121 aa12.55□□□□□ -0.4
PTPRU-204ENST00000428026 FABP2P12104 132 aa12.55□□□□□ -0.4
PTPRU-204ENST00000428026 PEBP1P30086 187 aaKnown RBP12.55□□□□□ -0.4
PTPRU-204ENST00000428026 PLPPR5Q32ZL2 321 aa12.55□□□□□ -0.4
PTPRU-204ENST00000428026 MAGEA5P43359 124 aa12.55□□□□□ -0.4
PTPRU-204ENST00000428026 LIMS1P48059 325 aa12.55□□□□□ -0.4
PTPRU-204ENST00000428026 C9orf40Q8IXQ3 194 aa12.55□□□□□ -0.4
PTPRU-204ENST00000428026 OR1N2Q8NGR9 330 aa12.55□□□□□ -0.4
PTPRU-204ENST00000428026 DNPH1O43598 174 aa12.55□□□□□ -0.4
PTPRU-204ENST00000428026 GZMHP20718 246 aa12.55□□□□□ -0.4
PTPRU-204ENST00000428026 SOX8P57073 446 aa12.55□□□□□ -0.4
PTPRU-204ENST00000428026 OR51B2Q9Y5P1 312 aa12.55□□□□□ -0.4
PTPRU-204ENST00000428026 OR2A4O95047 310 aa12.55□□□□□ -0.4
PTPRU-204ENST00000428026 RBPMS2Q6ZRY4 209 aaKnown RBP12.55□□□□□ -0.4
PTPRU-204ENST00000428026 OR2A7Q96R45 310 aa12.55□□□□□ -0.4
PTPRU-204ENST00000428026 TNFRSF19Q9NS68 423 aa12.55□□□□□ -0.4
PTPRU-204ENST00000428026 TRBV5-5A0A0J9YX44 114 aa12.54□□□□□ -0.4
PTPRU-204ENST00000428026 PIN1P1O15428 100 aa12.54□□□□□ -0.4
PTPRU-204ENST00000428026 TWIST1Q15672 202 aa12.54□□□□□ -0.4
PTPRU-204ENST00000428026 OR8B3Q8NGG8 313 aa12.54□□□□□ -0.4
PTPRU-204ENST00000428026 SF3B5Q9BWJ5 86 aaKnown RBP12.54□□□□□ -0.4
PTPRU-204ENST00000428026 C21orf140B9A014 251 aa12.54□□□□□ -0.4
PTPRU-204ENST00000428026 LGALS7P47929 136 aa12.54□□□□□ -0.4
PTPRU-204ENST00000428026 TMEM108Q6UXF1 575 aa12.54□□□□□ -0.4
PTPRU-204ENST00000428026 APCDD1LQ8NCL9 501 aa12.54□□□□□ -0.4
PTPRU-204ENST00000428026 ST6GALNAC3Q8NDV1 305 aa12.54□□□□□ -0.4
PTPRU-204ENST00000428026 SLC25A40Q8TBP6 338 aa12.54□□□□□ -0.4
PTPRU-204ENST00000428026 FGF11Q92914 225 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms