RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 IGHV3-72A0A0B4J1Y9 119 aa2.25□□□□□ -2.05
USP40-204ENST00000427947 IGHV7-4-1A0A0J9YVY3 117 aa2.25□□□□□ -2.05
USP40-204ENST00000427947 MYBPHLA2RUH7 354 aa2.25□□□□□ -2.05
USP40-204ENST00000427947 KCNK1O00180 336 aa2.25□□□□□ -2.05
USP40-204ENST00000427947 SOCS1O15524 211 aa2.25□□□□□ -2.05
USP40-204ENST00000427947 SLC37A4O43826 429 aa2.25□□□□□ -2.05
USP40-204ENST00000427947 OR5F1O95221 314 aa2.25□□□□□ -2.05
USP40-204ENST00000427947 CCNE2O96020 404 aa2.25□□□□□ -2.05
USP40-204ENST00000427947 IGKV1-17P01599 117 aa2.25□□□□□ -2.05
USP40-204ENST00000427947 IGLV3-19P01714 112 aa2.25□□□□□ -2.05
USP40-204ENST00000427947 CTXN2P0C2S0 81 aa2.25□□□□□ -2.05
USP40-204ENST00000427947 GABRA1P14867 456 aa2.25□□□□□ -2.05
USP40-204ENST00000427947 CXCL3P19876 107 aa2.25□□□□□ -2.05
USP40-204ENST00000427947 HSD11B1P28845 292 aa2.25□□□□□ -2.05
USP40-204ENST00000427947 SLC6A1P30531 599 aa2.25□□□□□ -2.05
USP40-204ENST00000427947 OMPP47874 163 aa2.25□□□□□ -2.05
USP40-204ENST00000427947 CMC4P56277 68 aaPredicted RBP2.25□□□□□ -2.05
USP40-204ENST00000427947 SLC35A2P78381 396 aa2.25□□□□□ -2.05
USP40-204ENST00000427947 ATP5G2Q06055 141 aa2.25□□□□□ -2.05
USP40-204ENST00000427947 SKP2Q13309 424 aa2.25□□□□□ -2.05
USP40-204ENST00000427947 TMED2Q15363 201 aa2.25□□□□□ -2.05
USP40-204ENST00000427947 RSU1Q15404 277 aa2.25□□□□□ -2.05
USP40-204ENST00000427947 SPA17Q15506 151 aa2.25□□□□□ -2.05
USP40-204ENST00000427947 TMEM176BQ3YBM2 270 aaPredicted RBP2.25□□□□□ -2.05
USP40-204ENST00000427947 LUZP6Q538Z0 58 aa2.25□□□□□ -2.05
USP40-204ENST00000427947 C1orf195Q5TG92 126 aa2.25□□□□□ -2.05
USP40-204ENST00000427947 FAM222AQ5U5X8 452 aa2.25□□□□□ -2.05
USP40-204ENST00000427947 ZFP1Q6P2D0 407 aa2.25□□□□□ -2.05
USP40-204ENST00000427947 FAM173BQ6P4H8 233 aa2.25□□□□□ -2.05
USP40-204ENST00000427947 TNFAIP8L2Q6P589 184 aaPredicted RBP2.25□□□□□ -2.05
USP40-204ENST00000427947 CLEC20AQ6ZU45 233 aa2.25□□□□□ -2.05
USP40-204ENST00000427947 NAA40Q86UY6 237 aa2.25□□□□□ -2.05
USP40-204ENST00000427947 STX12Q86Y82 276 aa2.25□□□□□ -2.05
USP40-204ENST00000427947 DOLPP1Q86YN1 238 aa2.25□□□□□ -2.05
USP40-204ENST00000427947 ORMDL3Q8N138 153 aa2.25□□□□□ -2.05
USP40-204ENST00000427947 OR2Z1Q8NG97 314 aa2.25□□□□□ -2.05
USP40-204ENST00000427947 OR4C13Q8NGP0 309 aa2.25□□□□□ -2.05
USP40-204ENST00000427947 LINC01560Q8TB33 94 aa2.25□□□□□ -2.05
USP40-204ENST00000427947 FAM57AQ8TBR7 257 aa2.25□□□□□ -2.05
USP40-204ENST00000427947 HAVCR2Q8TDQ0 301 aa2.25□□□□□ -2.05
USP40-204ENST00000427947 C2orf15Q8WU43 125 aaKnown RBP2.25□□□□□ -2.05
USP40-204ENST00000427947 TAMM41Q96BW9 452 aa2.25□□□□□ -2.05
USP40-204ENST00000427947 OTUB2Q96DC9 234 aa2.25□□□□□ -2.05
USP40-204ENST00000427947 RMI2Q96E14 147 aa2.25□□□□□ -2.05
USP40-204ENST00000427947 GPR82Q96P67 336 aa2.25□□□□□ -2.05
USP40-204ENST00000427947 DOK1Q99704 481 aa2.25□□□□□ -2.05
USP40-204ENST00000427947 RNF5Q99942 180 aa2.25□□□□□ -2.05
USP40-204ENST00000427947 ZNF649Q9BS31 505 aa2.25□□□□□ -2.05
USP40-204ENST00000427947 EBPLQ9BY08 206 aa2.25□□□□□ -2.05
USP40-204ENST00000427947 BCL2L14Q9BZR8 327 aa2.25□□□□□ -2.05
USP40-204ENST00000427947 SND1-IT1Q9HBX3 110 aa2.25□□□□□ -2.05
USP40-204ENST00000427947 PARVAQ9NVD7 372 aa2.25□□□□□ -2.05
USP40-204ENST00000427947 C21orf62Q9NYP8 219 aa2.25□□□□□ -2.05
USP40-204ENST00000427947 TAC3Q9UHF0 121 aa2.25□□□□□ -2.05
USP40-204ENST00000427947 EPRSP07814 1512 aaKnown RBP2.25□□□□□ -2.05
USP40-204ENST00000427947 ABCA10Q8WWZ4 1543 aa2.25□□□□□ -2.05
USP40-204ENST00000427947 CUBNO60494 3623 aa2.25□□□□□ -2.05
USP40-204ENST00000427947 GRIN2AQ12879 1464 aa2.25□□□□□ -2.05
USP40-204ENST00000427947 DMXL2Q8TDJ6 3036 aa2.25□□□□□ -2.05
USP40-204ENST00000427947 RTTNQ86VV8 2226 aa2.25□□□□□ -2.05
USP40-204ENST00000427947 ITPR2Q14571 2701 aa2.25□□□□□ -2.05
USP40-204ENST00000427947 PRG4Q92954 1404 aaPredicted RBP2.25□□□□□ -2.05
USP40-204ENST00000427947 RIMS2Q9UQ26 1411 aa2.25□□□□□ -2.05
USP40-204ENST00000427947 COL1A2P08123 1366 aa2.24□□□□□ -2.05
USP40-204ENST00000427947 BRWD3Q6RI45 1802 aa2.24□□□□□ -2.05
USP40-204ENST00000427947 TUBGCP6Q96RT7 1819 aa2.24□□□□□ -2.05
USP40-204ENST00000427947 CEP170Q5SW79 1584 aa2.24□□□□□ -2.05
USP40-204ENST00000427947 SVILO95425 2214 aa2.24□□□□□ -2.05
USP40-204ENST00000427947 IGLV3-12A0A075B6K2 115 aa2.24□□□□□ -2.05
USP40-204ENST00000427947 ZNF850A8MQ14 1090 aa2.24□□□□□ -2.05
USP40-204ENST00000427947 A8MWL6 223 aa2.24□□□□□ -2.05
USP40-204ENST00000427947 RPL36A-HNRNPH2H7BZ11 118 aa2.24□□□□□ -2.05
USP40-204ENST00000427947 M0QYV0 167 aa2.24□□□□□ -2.05
USP40-204ENST00000427947 MFNGO00587 321 aa2.24□□□□□ -2.05
USP40-204ENST00000427947 EPPINO95925 133 aa2.24□□□□□ -2.05
USP40-204ENST00000427947 IGKV1-39P01597 117 aa2.24□□□□□ -2.05
USP40-204ENST00000427947 HBZP02008 142 aa2.24□□□□□ -2.05
USP40-204ENST00000427947 IGKV1D-39P04432 117 aa2.24□□□□□ -2.05
USP40-204ENST00000427947 TCRBP04435 133 aa2.24□□□□□ -2.05
USP40-204ENST00000427947 IFNA16P05015 189 aa2.24□□□□□ -2.05
USP40-204ENST00000427947 IL4P05112 153 aa2.24□□□□□ -2.05
USP40-204ENST00000427947 CD28P10747 220 aa2.24□□□□□ -2.05
USP40-204ENST00000427947 CXCL2P19875 107 aa2.24□□□□□ -2.05
USP40-204ENST00000427947 GADD45AP24522 165 aa2.24□□□□□ -2.05
USP40-204ENST00000427947 ELK4P28324 431 aa2.24□□□□□ -2.05
USP40-204ENST00000427947 CD79BP40259 229 aa2.24□□□□□ -2.05
USP40-204ENST00000427947 CXCL12P48061 93 aa2.24□□□□□ -2.05
USP40-204ENST00000427947 NUDT2P50583 147 aa2.24□□□□□ -2.05
USP40-204ENST00000427947 ZNF83P51522 516 aa2.24□□□□□ -2.05
USP40-204ENST00000427947 MP68P56378 58 aa2.24□□□□□ -2.05
USP40-204ENST00000427947 VBP1P61758 197 aa2.24□□□□□ -2.05
USP40-204ENST00000427947 GLO1Q04760 184 aa2.24□□□□□ -2.05
USP40-204ENST00000427947 ZNF816Q0VGE8 651 aaPredicted RBP2.24□□□□□ -2.05
USP40-204ENST00000427947 PAFAH1B3Q15102 231 aaKnown RBP2.24□□□□□ -2.05
USP40-204ENST00000427947 KLHL12Q53G59 568 aa2.24□□□□□ -2.05
USP40-204ENST00000427947 HIST2H3PS2Q5TEC6 136 aa2.24□□□□□ -2.05
USP40-204ENST00000427947 SPATA31B1PQ5VZV4 182 aa2.24□□□□□ -2.05
USP40-204ENST00000427947 ELP2Q6IA86 826 aa2.24□□□□□ -2.05
USP40-204ENST00000427947 SPOPLQ6IQ16 392 aa2.24□□□□□ -2.05
USP40-204ENST00000427947 SCGB1D4Q6XE38 83 aa2.24□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms