RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 MRGPRGQ86SM5 289 aa5.99□□□□□ -1.45
SCN1A-204ENST00000423058 SMRP1Q8NCR6 262 aa5.99□□□□□ -1.45
SCN1A-204ENST00000423058 SHISA4Q96DD7 197 aa5.99□□□□□ -1.45
SCN1A-204ENST00000423058 OR2V2Q96R30 315 aa5.99□□□□□ -1.45
SCN1A-204ENST00000423058 TRAF4Q9BUZ4 470 aaPredicted RBP5.99□□□□□ -1.45
SCN1A-204ENST00000423058 TTTY12Q9BZ98 90 aa5.99□□□□□ -1.45
SCN1A-204ENST00000423058 ARID2Q68CP9 1835 aa5.99□□□□□ -1.45
SCN1A-204ENST00000423058 TMEM229AB2RXF0 380 aa5.99□□□□□ -1.45
SCN1A-204ENST00000423058 CDK2AP2O75956 126 aa5.99□□□□□ -1.45
SCN1A-204ENST00000423058 PPYP01298 95 aa5.99□□□□□ -1.45
SCN1A-204ENST00000423058 RD3LP0DJH9 198 aa5.99□□□□□ -1.45
SCN1A-204ENST00000423058 CTLA4P16410 223 aa5.99□□□□□ -1.45
SCN1A-204ENST00000423058 MALP21145 153 aa5.99□□□□□ -1.45
SCN1A-204ENST00000423058 ZNF56Q15929 161 aa5.99□□□□□ -1.45
SCN1A-204ENST00000423058 LIPFP07098 398 aa5.99□□□□□ -1.45
SCN1A-204ENST00000423058 SUMO2P61956 95 aaKnown RBP5.99□□□□□ -1.45
SCN1A-204ENST00000423058 ZNF645Q8N7E2 425 aa5.99□□□□□ -1.45
SCN1A-204ENST00000423058 OR4X2Q8NGF9 303 aa5.99□□□□□ -1.45
SCN1A-204ENST00000423058 EAF1Q96JC9 268 aaPredicted RBP5.99□□□□□ -1.45
SCN1A-204ENST00000423058 MPC2O95563 127 aa5.99□□□□□ -1.45
SCN1A-204ENST00000423058 ERVS71-1P61550 626 aa5.99□□□□□ -1.45
SCN1A-204ENST00000423058 CTF1Q16619 201 aa5.99□□□□□ -1.45
SCN1A-204ENST00000423058 COL5A1-AS1Q5SY13 56 aa5.99□□□□□ -1.45
SCN1A-204ENST00000423058 LDLRAD3Q86YD5 345 aa5.99□□□□□ -1.45
SCN1A-204ENST00000423058 BEND2Q8NDZ0 799 aa5.99□□□□□ -1.45
SCN1A-204ENST00000423058 SIRT7Q9NRC8 400 aa5.99□□□□□ -1.45
SCN1A-204ENST00000423058 PEMTQ9UBM1 199 aa5.99□□□□□ -1.45
SCN1A-204ENST00000423058 TRAV34A0A0B4J273 112 aa5.99□□□□□ -1.45
SCN1A-204ENST00000423058 CLDN14O95500 239 aa5.99□□□□□ -1.45
SCN1A-204ENST00000423058 C1orf53Q5VUE5 145 aa5.99□□□□□ -1.45
SCN1A-204ENST00000423058 SELENOPP49908 381 aa5.99□□□□□ -1.45
SCN1A-204ENST00000423058 RPL8P62917 257 aaKnown RBP5.99□□□□□ -1.45
SCN1A-204ENST00000423058 CX3CL1P78423 397 aa5.99□□□□□ -1.45
SCN1A-204ENST00000423058 SRSF5Q13243 272 aaKnown RBP5.99□□□□□ -1.45
SCN1A-204ENST00000423058 C3AR1Q16581 482 aa5.99□□□□□ -1.45
SCN1A-204ENST00000423058 TTC32Q5I0X7 151 aa5.99□□□□□ -1.45
SCN1A-204ENST00000423058 OTPQ5XKR4 325 aa5.99□□□□□ -1.45
SCN1A-204ENST00000423058 WDFY1Q8IWB7 410 aa5.99□□□□□ -1.45
SCN1A-204ENST00000423058 LINC01465Q8N7H1 131 aa5.99□□□□□ -1.45
SCN1A-204ENST00000423058 OR10D4PQ8NGN7 298 aa5.99□□□□□ -1.45
SCN1A-204ENST00000423058 WNT2BQ93097 391 aa5.99□□□□□ -1.45
SCN1A-204ENST00000423058 RALGAPA2Q2PPJ7 1873 aa5.99□□□□□ -1.45
SCN1A-204ENST00000423058 SPTBN2O15020 2390 aa5.99□□□□□ -1.45
SCN1A-204ENST00000423058 MPDZO75970 2070 aa5.98□□□□□ -1.45
SCN1A-204ENST00000423058 CTSVO60911 334 aa5.98□□□□□ -1.45
SCN1A-204ENST00000423058 DXOO77932 396 aaKnown RBP5.98□□□□□ -1.45
SCN1A-204ENST00000423058 ZFPL1O95159 310 aa5.98□□□□□ -1.45
SCN1A-204ENST00000423058 CA2P00918 260 aa5.98□□□□□ -1.45
SCN1A-204ENST00000423058 UCP2P55851 309 aa5.98□□□□□ -1.45
SCN1A-204ENST00000423058 LINC00469Q8N7U9 141 aa5.98□□□□□ -1.45
SCN1A-204ENST00000423058 OR4C13Q8NGP0 309 aa5.98□□□□□ -1.45
SCN1A-204ENST00000423058 MRGPRFQ96AM1 343 aa5.98□□□□□ -1.45
SCN1A-204ENST00000423058 GPR82Q96P67 336 aa5.98□□□□□ -1.45
SCN1A-204ENST00000423058 HSPB7Q9UBY9 170 aa5.98□□□□□ -1.45
SCN1A-204ENST00000423058 YBX2Q9Y2T7 364 aaKnown RBP5.98□□□□□ -1.45
SCN1A-204ENST00000423058 MEX3AA1L020 520 aaKnown RBP5.98□□□□□ -1.45
SCN1A-204ENST00000423058 NPPCP23582 126 aa5.98□□□□□ -1.45
SCN1A-204ENST00000423058 FAM214BQ7L5A3 538 aa5.98□□□□□ -1.45
SCN1A-204ENST00000423058 GAPTQ8N292 157 aa5.98□□□□□ -1.45
SCN1A-204ENST00000423058 C1orf162Q8NEQ5 155 aaPredicted RBP5.98□□□□□ -1.45
SCN1A-204ENST00000423058 RNF167Q9H6Y7 350 aa5.98□□□□□ -1.45
SCN1A-204ENST00000423058 LOC107984156A0A0G2JMH3 177 aa5.98□□□□□ -1.45
SCN1A-204ENST00000423058 PRR19A6NJB7 356 aa5.98□□□□□ -1.45
SCN1A-204ENST00000423058 RPL36A-HNRNPH2H7BZ11 118 aa5.98□□□□□ -1.45
SCN1A-204ENST00000423058 DLL1O00548 723 aa5.98□□□□□ -1.45
SCN1A-204ENST00000423058 THY1P04216 161 aa5.98□□□□□ -1.45
SCN1A-204ENST00000423058 ABLIM2Q6H8Q1 611 aa5.98□□□□□ -1.45
SCN1A-204ENST00000423058 CGB2Q6NT52 195 aa5.98□□□□□ -1.45
SCN1A-204ENST00000423058 TCF24Q7RTU0 167 aa5.98□□□□□ -1.45
SCN1A-204ENST00000423058 ARL17AQ8IVW1 177 aa5.98□□□□□ -1.45
SCN1A-204ENST00000423058 PGLYRP3Q96LB9 341 aa5.98□□□□□ -1.45
SCN1A-204ENST00000423058 IL17BQ9UHF5 180 aa5.98□□□□□ -1.45
SCN1A-204ENST00000423058 HMSDA8MTL9 139 aa5.98□□□□□ -1.45
SCN1A-204ENST00000423058 B9A039 149 aa5.98□□□□□ -1.45
SCN1A-204ENST00000423058 H3BRM9 83 aa5.98□□□□□ -1.45
SCN1A-204ENST00000423058 GAB4Q2WGN9 574 aa5.98□□□□□ -1.45
SCN1A-204ENST00000423058 PSMG4Q5JS54 123 aa5.98□□□□□ -1.45
SCN1A-204ENST00000423058 OR10AC1Q8NH08 325 aa5.98□□□□□ -1.45
SCN1A-204ENST00000423058 OR13C6PQ8NH95 151 aa5.98□□□□□ -1.45
SCN1A-204ENST00000423058 HIST1H4GQ99525 98 aa5.98□□□□□ -1.45
SCN1A-204ENST00000423058 NRIP2Q9BQI9 281 aa5.98□□□□□ -1.45
SCN1A-204ENST00000423058 ARFGEF3Q5TH69 2177 aa5.98□□□□□ -1.45
SCN1A-204ENST00000423058 RBMY1BA6NDE4 496 aaKnown RBP5.98□□□□□ -1.45
SCN1A-204ENST00000423058 RBMY1EA6NEQ0 496 aaKnown RBP5.98□□□□□ -1.45
SCN1A-204ENST00000423058 RBMY1DP0C7P1 496 aaKnown RBP5.98□□□□□ -1.45
SCN1A-204ENST00000423058 RBMY1A1P0DJD3 496 aaKnown RBP5.98□□□□□ -1.45
SCN1A-204ENST00000423058 RBMY1CP0DJD4 496 aa5.98□□□□□ -1.45
SCN1A-204ENST00000423058 CTGFP29279 349 aa5.98□□□□□ -1.45
SCN1A-204ENST00000423058 REG1BP48304 166 aa5.98□□□□□ -1.45
SCN1A-204ENST00000423058 CCL8P80075 99 aa5.98□□□□□ -1.45
SCN1A-204ENST00000423058 RAB32Q13637 225 aa5.98□□□□□ -1.45
SCN1A-204ENST00000423058 AANATQ16613 207 aa5.98□□□□□ -1.45
SCN1A-204ENST00000423058 COX14Q96I36 57 aa5.98□□□□□ -1.45
SCN1A-204ENST00000423058 ZNF407Q9C0G0 2248 aa5.98□□□□□ -1.45
SCN1A-204ENST00000423058 CTXND1A0A1B0GTU2 59 aa5.98□□□□□ -1.45
SCN1A-204ENST00000423058 CGB1A6NKQ9 187 aa5.98□□□□□ -1.45
SCN1A-204ENST00000423058 MGST3O14880 152 aa5.98□□□□□ -1.45
SCN1A-204ENST00000423058 KBTBD11O94819 623 aa5.98□□□□□ -1.45
SCN1A-204ENST00000423058 POLR2GP62487 172 aaKnown RBP eCLIP5.98□□□□□ -1.45
SCN1A-204ENST00000423058 SMUG1Q53HV7 270 aa5.98□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms