RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 MS4A10Q96PG2 267 aa8.96□□□□□ -0.97
USP4-204ENST00000416417 UQCC2Q9BRT2 126 aa8.96□□□□□ -0.97
USP4-204ENST00000416417 CST11Q9H112 138 aa8.96□□□□□ -0.97
USP4-204ENST00000416417 ISYNA1Q9NPH2 558 aa8.96□□□□□ -0.97
USP4-204ENST00000416417 OR1A1Q9P1Q5 309 aa8.96□□□□□ -0.97
USP4-204ENST00000416417 KIAA1456Q9P272 454 aa8.96□□□□□ -0.97
USP4-204ENST00000416417 IGHV4OR15-8A0A075B7B6 117 aa8.95□□□□□ -0.98
USP4-204ENST00000416417 A0A087WW49 117 aa8.95□□□□□ -0.98
USP4-204ENST00000416417 OVOL1O14753 267 aa8.95□□□□□ -0.98
USP4-204ENST00000416417 SAP30O75446 220 aa8.95□□□□□ -0.98
USP4-204ENST00000416417 RGS11O94810 467 aa8.95□□□□□ -0.98
USP4-204ENST00000416417 NDUFA3O95167 84 aa8.95□□□□□ -0.98
USP4-204ENST00000416417 EGR2P11161 476 aaPredicted RBP8.95□□□□□ -0.98
USP4-204ENST00000416417 CX3CL1P78423 397 aa8.95□□□□□ -0.98
USP4-204ENST00000416417 PLGLAQ15195 96 aa8.95□□□□□ -0.98
USP4-204ENST00000416417 P2RY14Q15391 338 aa8.95□□□□□ -0.98
USP4-204ENST00000416417 CEACAM19Q7Z692 300 aa8.95□□□□□ -0.98
USP4-204ENST00000416417 SVOPQ8N4V2 548 aa8.95□□□□□ -0.98
USP4-204ENST00000416417 PACRGLQ8N7B6 248 aa8.95□□□□□ -0.98
USP4-204ENST00000416417 MINDY2Q8NBR6 621 aa8.95□□□□□ -0.98
USP4-204ENST00000416417 NPBQ8NG41 125 aa8.95□□□□□ -0.98
USP4-204ENST00000416417 TMEM59Q9BXS4 323 aa8.95□□□□□ -0.98
USP4-204ENST00000416417 ABRACLQ9P1F3 81 aa8.95□□□□□ -0.98
USP4-204ENST00000416417 ZNF580Q9UK33 172 aa8.95□□□□□ -0.98
USP4-204ENST00000416417 RNF150Q9ULK6 438 aa8.95□□□□□ -0.98
USP4-204ENST00000416417 PTGES3LE9PB15 166 aa8.95□□□□□ -0.98
USP4-204ENST00000416417 RRHO14718 337 aa8.95□□□□□ -0.98
USP4-204ENST00000416417 SOCS1O15524 211 aa8.95□□□□□ -0.98
USP4-204ENST00000416417 CD1AP06126 327 aa8.95□□□□□ -0.98
USP4-204ENST00000416417 SPNP16150 400 aa8.95□□□□□ -0.98
USP4-204ENST00000416417 MAPK3P27361 379 aaPredicted RBP8.95□□□□□ -0.98
USP4-204ENST00000416417 RUNX1Q01196 453 aa8.95□□□□□ -0.98
USP4-204ENST00000416417 C19orf54Q5BKX5 351 aa8.95□□□□□ -0.98
USP4-204ENST00000416417 GLT8D1Q68CQ7 371 aa8.95□□□□□ -0.98
USP4-204ENST00000416417 SBSPONQ8IVN8 264 aa8.95□□□□□ -0.98
USP4-204ENST00000416417 FBLIM1Q8WUP2 373 aa8.95□□□□□ -0.98
USP4-204ENST00000416417 ARPC1AQ92747 370 aa8.95□□□□□ -0.98
USP4-204ENST00000416417 TMEM203Q969S6 136 aa8.95□□□□□ -0.98
USP4-204ENST00000416417 PLCXD1Q9NUJ7 323 aa8.95□□□□□ -0.98
USP4-204ENST00000416417 FKBP14Q9NWM8 211 aa8.95□□□□□ -0.98
USP4-204ENST00000416417 GHRLQ9UBU3 117 aa8.95□□□□□ -0.98
USP4-204ENST00000416417 STEAP1Q9UHE8 339 aa8.95□□□□□ -0.98
USP4-204ENST00000416417 SLC23A1Q9UHI7 598 aa8.95□□□□□ -0.98
USP4-204ENST00000416417 AK3Q9UIJ7 227 aa8.95□□□□□ -0.98
USP4-204ENST00000416417 ERGIC3Q9Y282 383 aa8.95□□□□□ -0.98
USP4-204ENST00000416417 ANKRD65E5RJM6 399 aa8.94□□□□□ -0.98
USP4-204ENST00000416417 H0YJW9 148 aa8.94□□□□□ -0.98
USP4-204ENST00000416417 H7C2Y5 167 aa8.94□□□□□ -0.98
USP4-204ENST00000416417 NAPSAO96009 420 aa8.94□□□□□ -0.98
USP4-204ENST00000416417 GSTP1P09211 210 aaKnown RBP8.94□□□□□ -0.98
USP4-204ENST00000416417 QRFPP83859 136 aa8.94□□□□□ -0.98
USP4-204ENST00000416417 C1orf100Q5SVJ3 147 aa8.94□□□□□ -0.98
USP4-204ENST00000416417 ZNF880Q6PDB4 577 aa8.94□□□□□ -0.98
USP4-204ENST00000416417 ZNF554Q86TJ5 538 aa8.94□□□□□ -0.98
USP4-204ENST00000416417 GFI1Q99684 422 aa8.94□□□□□ -0.98
USP4-204ENST00000416417 TPSG1Q9NRR2 321 aa8.94□□□□□ -0.98
USP4-204ENST00000416417 PLEKHJ1Q9NW61 149 aa8.94□□□□□ -0.98
USP4-204ENST00000416417 GAR1Q9NY12 217 aaKnown RBP8.94□□□□□ -0.98
USP4-204ENST00000416417 FOXA2Q9Y261 457 aaPredicted RBP8.94□□□□□ -0.98
USP4-204ENST00000416417 SMAD5-AS1Q9Y6J3 95 aa8.94□□□□□ -0.98
USP4-204ENST00000416417 HUWE1Q7Z6Z7 4374 aaKnown RBP8.94□□□□□ -0.98
USP4-204ENST00000416417 TRIM64CA6NLI5 447 aa8.93□□□□□ -0.98
USP4-204ENST00000416417 TMEM14DPA8MWL7 114 aa8.93□□□□□ -0.98
USP4-204ENST00000416417 LINC01619G3V211 115 aa8.93□□□□□ -0.98
USP4-204ENST00000416417 RAB29O14966 203 aa8.93□□□□□ -0.98
USP4-204ENST00000416417 PROP1O75360 226 aa8.93□□□□□ -0.98
USP4-204ENST00000416417 CDK1P06493 297 aa8.93□□□□□ -0.98
USP4-204ENST00000416417 SCTP09683 121 aa8.93□□□□□ -0.98
USP4-204ENST00000416417 UBBP0CG47 229 aa8.93□□□□□ -0.98
USP4-204ENST00000416417 SRMP19623 302 aa8.93□□□□□ -0.98
USP4-204ENST00000416417 CEACAM6P40199 344 aa8.93□□□□□ -0.98
USP4-204ENST00000416417 HSD17B12Q53GQ0 312 aa8.93□□□□□ -0.98
USP4-204ENST00000416417 LY6G6FQ5SQ64 297 aa8.93□□□□□ -0.98
USP4-204ENST00000416417 OGFRL1Q5TC84 451 aaPredicted RBP8.93□□□□□ -0.98
USP4-204ENST00000416417 ZNF660Q6AZW8 331 aaPredicted RBP8.93□□□□□ -0.98
USP4-204ENST00000416417 UNQ5815/PRO19632Q6UWF5 114 aa8.93□□□□□ -0.98
USP4-204ENST00000416417 PPP1R27Q86WC6 154 aa8.93□□□□□ -0.98
USP4-204ENST00000416417 KCNG3Q8TAE7 436 aa8.93□□□□□ -0.98
USP4-204ENST00000416417 CHCHD6Q9BRQ6 235 aa8.93□□□□□ -0.98
USP4-204ENST00000416417 TM2D1Q9BX74 207 aa8.93□□□□□ -0.98
USP4-204ENST00000416417 TOLLIPQ9H0E2 274 aa8.93□□□□□ -0.98
USP4-204ENST00000416417 C11orf54Q9H0W9 315 aaPredicted RBP8.93□□□□□ -0.98
USP4-204ENST00000416417 LPAR5Q9H1C0 372 aa8.93□□□□□ -0.98
USP4-204ENST00000416417 PIPOXQ9P0Z9 390 aa8.93□□□□□ -0.98
USP4-204ENST00000416417 METTL1Q9UBP6 276 aaKnown RBP8.93□□□□□ -0.98
USP4-204ENST00000416417 LSM2Q9Y333 95 aaKnown RBP8.93□□□□□ -0.98
USP4-204ENST00000416417 NUBP2Q9Y5Y2 271 aa8.93□□□□□ -0.98
USP4-204ENST00000416417 SLC22A1O15245 554 aa8.92□□□□□ -0.98
USP4-204ENST00000416417 CA2P00918 260 aa8.92□□□□□ -0.98
USP4-204ENST00000416417 LGALS1P09382 135 aaKnown RBP8.92□□□□□ -0.98
USP4-204ENST00000416417 CLDN12P56749 244 aa8.92□□□□□ -0.98
USP4-204ENST00000416417 RPS25P62851 125 aaKnown RBP8.92□□□□□ -0.98
USP4-204ENST00000416417 DEFA5Q01523 94 aa8.92□□□□□ -0.98
USP4-204ENST00000416417 PLA2G7Q13093 441 aa8.92□□□□□ -0.98
USP4-204ENST00000416417 PSG5Q15238 335 aa8.92□□□□□ -0.98
USP4-204ENST00000416417 MED22Q15528 200 aa8.92□□□□□ -0.98
USP4-204ENST00000416417 SRSF7Q16629 238 aaKnown RBP eCLIP8.92□□□□□ -0.98
USP4-204ENST00000416417 LIPKQ5VXJ0 399 aa8.92□□□□□ -0.98
USP4-204ENST00000416417 LFNGQ8NES3 379 aa8.92□□□□□ -0.98
USP4-204ENST00000416417 AGMATQ9BSE5 352 aa8.92□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms