RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 NKX6-1P78426 367 aaPredicted RBP8.29□□□□□ -1.08
SS18-203ENST00000415083 TLE4Q04727 773 aa8.29□□□□□ -1.08
SS18-203ENST00000415083 ZNF787Q6DD87 383 aa8.29□□□□□ -1.08
SS18-203ENST00000415083 LINC00596Q86U02 117 aa8.29□□□□□ -1.08
SS18-203ENST00000415083 C14orf144Q96I85 54 aa8.29□□□□□ -1.08
SS18-203ENST00000415083 SNX22Q96L94 193 aa8.29□□□□□ -1.08
SS18-203ENST00000415083 RAB40CQ96S21 281 aa8.29□□□□□ -1.08
SS18-203ENST00000415083 NIPSNAP3BQ9BS92 247 aa8.29□□□□□ -1.08
SS18-203ENST00000415083 PKIBQ9C010 78 aa8.29□□□□□ -1.08
SS18-203ENST00000415083 STRADBQ9C0K7 418 aa8.29□□□□□ -1.08
SS18-203ENST00000415083 IL17BQ9UHF5 180 aa8.29□□□□□ -1.08
SS18-203ENST00000415083 WIPI2Q9Y4P8 454 aa8.29□□□□□ -1.08
SS18-203ENST00000415083 MDH2P40926 338 aaKnown RBP8.28□□□□□ -1.08
SS18-203ENST00000415083 ATP1A1-AS1Q5TC04 95 aa8.28□□□□□ -1.08
SS18-203ENST00000415083 SLC25A24Q6NUK1 477 aa8.28□□□□□ -1.08
SS18-203ENST00000415083 FGFRL1Q8N441 504 aa8.28□□□□□ -1.08
SS18-203ENST00000415083 OR1L1Q8NH94 360 aa8.28□□□□□ -1.08
SS18-203ENST00000415083 APH1AQ96BI3 265 aa8.28□□□□□ -1.08
SS18-203ENST00000415083 SIRT7Q9NRC8 400 aa8.28□□□□□ -1.08
SS18-203ENST00000415083 METRNQ9UJH8 293 aa8.28□□□□□ -1.08
SS18-203ENST00000415083 BOKQ9UMX3 212 aaPredicted RBP8.28□□□□□ -1.08
SS18-203ENST00000415083 DEGS1O15121 323 aa8.28□□□□□ -1.08
SS18-203ENST00000415083 ELLP55199 621 aaPredicted RBP8.28□□□□□ -1.08
SS18-203ENST00000415083 ZDHHC16Q969W1 377 aa8.28□□□□□ -1.08
SS18-203ENST00000415083 PSMG3Q9BT73 122 aaPredicted RBP8.28□□□□□ -1.08
SS18-203ENST00000415083 ELOVL1Q9BW60 279 aa8.28□□□□□ -1.08
SS18-203ENST00000415083 OR2J1Q9GZK6 312 aa8.28□□□□□ -1.08
SS18-203ENST00000415083 HCFC1P51610 2035 aa8.28□□□□□ -1.08
SS18-203ENST00000415083 SEC14L6B5MCN3 397 aa8.28□□□□□ -1.08
SS18-203ENST00000415083 CDIPTO14735 213 aa8.28□□□□□ -1.08
SS18-203ENST00000415083 SERPINE2P07093 398 aa8.28□□□□□ -1.08
SS18-203ENST00000415083 PFN1P07737 140 aaKnown RBP8.28□□□□□ -1.08
SS18-203ENST00000415083 UTF1Q5T230 341 aa8.28□□□□□ -1.08
SS18-203ENST00000415083 CENPVQ7Z7K6 275 aaPredicted RBP8.28□□□□□ -1.08
SS18-203ENST00000415083 NECAP1Q8NC96 275 aa8.28□□□□□ -1.08
SS18-203ENST00000415083 MDS2Q8NDY4 140 aa8.28□□□□□ -1.08
SS18-203ENST00000415083 GFOD1Q9NXC2 390 aa8.28□□□□□ -1.08
SS18-203ENST00000415083 RNF150Q9ULK6 438 aa8.28□□□□□ -1.08
SS18-203ENST00000415083 MPC1Q9Y5U8 109 aa8.28□□□□□ -1.08
SS18-203ENST00000415083 OR5B21A6NL26 309 aa8.27□□□□□ -1.09
SS18-203ENST00000415083 J3QT63 122 aa8.27□□□□□ -1.09
SS18-203ENST00000415083 IFNL4K9M1U5 179 aa8.27□□□□□ -1.09
SS18-203ENST00000415083 MLNRO43193 412 aa8.27□□□□□ -1.09
SS18-203ENST00000415083 SMPD2O60906 423 aa8.27□□□□□ -1.09
SS18-203ENST00000415083 WDR1O75083 606 aa8.27□□□□□ -1.09
SS18-203ENST00000415083 PROP1O75360 226 aa8.27□□□□□ -1.09
SS18-203ENST00000415083 MPV17P39210 176 aa8.27□□□□□ -1.09
SS18-203ENST00000415083 CEACAM6P40199 344 aa8.27□□□□□ -1.09
SS18-203ENST00000415083 TFF3Q07654 80 aa8.27□□□□□ -1.09
SS18-203ENST00000415083 RTP5Q14D33 572 aa8.27□□□□□ -1.09
SS18-203ENST00000415083 ZNF146Q15072 292 aa8.27□□□□□ -1.09
SS18-203ENST00000415083 STX12Q86Y82 276 aa8.27□□□□□ -1.09
SS18-203ENST00000415083 ZNF573Q86YE8 665 aa8.27□□□□□ -1.09
SS18-203ENST00000415083 TAF15Q92804 592 aaKnown RBP eCLIP8.27□□□□□ -1.09
SS18-203ENST00000415083 FAM210BQ96KR6 192 aa8.27□□□□□ -1.09
SS18-203ENST00000415083 CDX2Q99626 313 aaPredicted RBP8.27□□□□□ -1.09
SS18-203ENST00000415083 RIMS4Q9H426 269 aaPredicted RBP8.27□□□□□ -1.09
SS18-203ENST00000415083 HES4Q9HCC6 221 aa8.27□□□□□ -1.09
SS18-203ENST00000415083 ATMQ13315 3056 aa8.27□□□□□ -1.09
SS18-203ENST00000415083 UBE2L5PA0A1B0GUS4 154 aa8.27□□□□□ -1.09
SS18-203ENST00000415083 CYB5R3P00387 301 aaPredicted RBP8.27□□□□□ -1.09
SS18-203ENST00000415083 G6PCP35575 357 aa8.27□□□□□ -1.09
SS18-203ENST00000415083 ARR3P36575 388 aa8.27□□□□□ -1.09
SS18-203ENST00000415083 SPANXN5Q5MJ07 72 aa8.27□□□□□ -1.09
SS18-203ENST00000415083 DCAF10Q5QP82 559 aa8.27□□□□□ -1.09
SS18-203ENST00000415083 ZNF826PQ6ZT77 177 aa8.27□□□□□ -1.09
SS18-203ENST00000415083 SSX9Q7RTT3 188 aa8.27□□□□□ -1.09
SS18-203ENST00000415083 OR52L2PQ8NGH6 319 aa8.27□□□□□ -1.09
SS18-203ENST00000415083 COQ2Q96H96 371 aa8.27□□□□□ -1.09
SS18-203ENST00000415083 PLK3Q9H4B4 646 aa8.27□□□□□ -1.09
SS18-203ENST00000415083 TMEM242Q9NWH2 141 aa8.27□□□□□ -1.09
SS18-203ENST00000415083 CLN8Q9UBY8 286 aa8.27□□□□□ -1.09
SS18-203ENST00000415083 C17orf98A8MV24 154 aa8.26□□□□□ -1.09
SS18-203ENST00000415083 DFFBO76075 338 aa8.26□□□□□ -1.09
SS18-203ENST00000415083 CNOT4O95628 575 aaKnown RBP8.26□□□□□ -1.09
SS18-203ENST00000415083 CER1O95813 267 aa8.26□□□□□ -1.09
SS18-203ENST00000415083 NDUFB7P17568 137 aa8.26□□□□□ -1.09
SS18-203ENST00000415083 DUSP3P51452 185 aaPredicted RBP8.26□□□□□ -1.09
SS18-203ENST00000415083 TMEM41BQ5BJD5 291 aa8.26□□□□□ -1.09
SS18-203ENST00000415083 OR4X1Q8NH49 305 aa8.26□□□□□ -1.09
SS18-203ENST00000415083 PARD6GQ9BYG4 376 aaPredicted RBP8.26□□□□□ -1.09
SS18-203ENST00000415083 TMEM9BQ9NQ34 198 aa8.26□□□□□ -1.09
SS18-203ENST00000415083 HSPB7Q9UBY9 170 aa8.26□□□□□ -1.09
SS18-203ENST00000415083 ANKRD30BLA7E2S9 258 aa8.26□□□□□ -1.09
SS18-203ENST00000415083 LINC00473A8K010 186 aa8.26□□□□□ -1.09
SS18-203ENST00000415083 C12orf77C9JDV5 145 aa8.26□□□□□ -1.09
SS18-203ENST00000415083 PAX1P15863 534 aa8.26□□□□□ -1.09
SS18-203ENST00000415083 HIST1H1BP16401 226 aaKnown RBP8.26□□□□□ -1.09
SS18-203ENST00000415083 ZNF16P17020 682 aaPredicted RBP8.26□□□□□ -1.09
SS18-203ENST00000415083 TUBG1P23258 451 aa8.26□□□□□ -1.09
SS18-203ENST00000415083 TNFRSF9Q07011 255 aa8.26□□□□□ -1.09
SS18-203ENST00000415083 PNPLA5Q7Z6Z6 429 aaPredicted RBP8.26□□□□□ -1.09
SS18-203ENST00000415083 HIST1H2BLQ99880 126 aa8.26□□□□□ -1.09
SS18-203ENST00000415083 PYGO2Q9BRQ0 406 aa8.26□□□□□ -1.09
SS18-203ENST00000415083 BDP1A6H8Y1 2624 aa8.26□□□□□ -1.09
SS18-203ENST00000415083 CACNA1DQ01668 2161 aa8.26□□□□□ -1.09
SS18-203ENST00000415083 TRBV24-1A0A075B6N3 115 aa8.26□□□□□ -1.09
SS18-203ENST00000415083 ODAMA1E959 279 aa8.26□□□□□ -1.09
SS18-203ENST00000415083 OR5H1A6NKK0 313 aa8.26□□□□□ -1.09
SS18-203ENST00000415083 S1PR2O95136 353 aa8.26□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms