RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 ST8SIA5O15466 376 aa11.61□□□□□ -0.55
SF3B1-204ENST00000414963 PEX14O75381 377 aa11.61□□□□□ -0.55
SF3B1-204ENST00000414963 TGFAP01135 160 aa11.61□□□□□ -0.55
SF3B1-204ENST00000414963 IGHV3-7P01780 117 aa11.61□□□□□ -0.55
SF3B1-204ENST00000414963 ZNF137PP52743 207 aa11.61□□□□□ -0.55
SF3B1-204ENST00000414963 UBE2MP61081 183 aaKnown RBP11.61□□□□□ -0.55
SF3B1-204ENST00000414963 RND3P61587 244 aa11.61□□□□□ -0.55
SF3B1-204ENST00000414963 FAHD2BQ6P2I3 314 aaPredicted RBP11.61□□□□□ -0.55
SF3B1-204ENST00000414963 SLC25A42Q86VD7 318 aa11.61□□□□□ -0.55
SF3B1-204ENST00000414963 ODF3L1Q8IXM7 274 aa11.61□□□□□ -0.55
SF3B1-204ENST00000414963 FAHD2AQ96GK7 314 aa11.61□□□□□ -0.55
SF3B1-204ENST00000414963 OR2D2Q9H210 308 aa11.61□□□□□ -0.55
SF3B1-204ENST00000414963 SIRT7Q9NRC8 400 aa11.61□□□□□ -0.55
SF3B1-204ENST00000414963 CCL28Q9NRJ3 127 aa11.61□□□□□ -0.55
SF3B1-204ENST00000414963 PIPOXQ9P0Z9 390 aa11.61□□□□□ -0.55
SF3B1-204ENST00000414963 ZNF221Q9UK13 617 aa11.61□□□□□ -0.55
SF3B1-204ENST00000414963 ITGB1BP2Q9UKP3 347 aa11.61□□□□□ -0.55
SF3B1-204ENST00000414963 RNF150Q9ULK6 438 aa11.61□□□□□ -0.55
SF3B1-204ENST00000414963 C14orf166Q9Y224 244 aaKnown RBP11.61□□□□□ -0.55
SF3B1-204ENST00000414963 RBM7Q9Y580 266 aaKnown RBP11.61□□□□□ -0.55
SF3B1-204ENST00000414963 AUP1Q9Y679 476 aa11.61□□□□□ -0.55
SF3B1-204ENST00000414963 CSMD1Q96PZ7 3565 aa11.61□□□□□ -0.55
SF3B1-204ENST00000414963 TRAV6A0A075B6T7 132 aa11.6□□□□□ -0.55
SF3B1-204ENST00000414963 ODF3BA8MYP8 253 aa11.6□□□□□ -0.55
SF3B1-204ENST00000414963 INMT-MINDY4F8WBC2 141 aa11.6□□□□□ -0.55
SF3B1-204ENST00000414963 RNASEK-C17orf49H0YIS7 233 aa11.6□□□□□ -0.55
SF3B1-204ENST00000414963 RAB29O14966 203 aa11.6□□□□□ -0.55
SF3B1-204ENST00000414963 ARPC1BO15143 372 aaKnown RBP11.6□□□□□ -0.55
SF3B1-204ENST00000414963 PROP1O75360 226 aa11.6□□□□□ -0.55
SF3B1-204ENST00000414963 HOXB4P17483 251 aaPredicted RBP11.6□□□□□ -0.55
SF3B1-204ENST00000414963 GNG10P50151 68 aa11.6□□□□□ -0.55
SF3B1-204ENST00000414963 UBE2E1P51965 193 aa11.6□□□□□ -0.55
SF3B1-204ENST00000414963 DHODHQ02127 395 aa11.6□□□□□ -0.55
SF3B1-204ENST00000414963 BAMBIQ13145 260 aa11.6□□□□□ -0.55
SF3B1-204ENST00000414963 EIF4EBP1Q13541 118 aaPredicted RBP11.6□□□□□ -0.55
SF3B1-204ENST00000414963 ZNF626Q68DY1 528 aa11.6□□□□□ -0.55
SF3B1-204ENST00000414963 ZNF818PQ6ZRF7 136 aa11.6□□□□□ -0.55
SF3B1-204ENST00000414963 CMTM1Q8IZ96 169 aa11.6□□□□□ -0.55
SF3B1-204ENST00000414963 PNKDQ8N490 385 aa11.6□□□□□ -0.55
SF3B1-204ENST00000414963 DRAM1Q8N682 238 aa11.6□□□□□ -0.55
SF3B1-204ENST00000414963 ST6GALNAC6Q969X2 333 aa11.6□□□□□ -0.55
SF3B1-204ENST00000414963 ABHD14BQ96IU4 210 aa11.6□□□□□ -0.55
SF3B1-204ENST00000414963 ZNF251Q9BRH9 671 aa11.6□□□□□ -0.55
SF3B1-204ENST00000414963 PCGF1Q9BSM1 259 aa11.6□□□□□ -0.55
SF3B1-204ENST00000414963 C7orf69Q9H7B7 122 aa11.6□□□□□ -0.55
SF3B1-204ENST00000414963 MYO9AB2RTY4 2548 aa11.6□□□□□ -0.55
SF3B1-204ENST00000414963 VPS13CQ709C8 3753 aa11.6□□□□□ -0.55
SF3B1-204ENST00000414963 YLPM1P49750 1951 aaKnown RBP11.59□□□□□ -0.55
SF3B1-204ENST00000414963 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.59□□□□□ -0.552e-8■■■■■ 29.3
SF3B1-204ENST00000414963 CR1P17927 2039 aa11.59□□□□□ -0.55
SF3B1-204ENST00000414963 A0A1W2PPE3 182 aa11.59□□□□□ -0.55
SF3B1-204ENST00000414963 LY6LH3BQJ8 138 aa11.59□□□□□ -0.55
SF3B1-204ENST00000414963 BUB1B-PAK6H3BSN5 160 aa11.59□□□□□ -0.55
SF3B1-204ENST00000414963 HSD17B6O14756 317 aa11.59□□□□□ -0.55
SF3B1-204ENST00000414963 RLN1P04808 185 aa11.59□□□□□ -0.55
SF3B1-204ENST00000414963 IL5P05113 134 aa11.59□□□□□ -0.55
SF3B1-204ENST00000414963 PI3P19957 117 aa11.59□□□□□ -0.55
SF3B1-204ENST00000414963 COX7A1P24310 79 aa11.59□□□□□ -0.55
SF3B1-204ENST00000414963 S100GP29377 79 aa11.59□□□□□ -0.55
SF3B1-204ENST00000414963 GPR12P47775 334 aa11.59□□□□□ -0.55
SF3B1-204ENST00000414963 DLX1P56177 255 aa11.59□□□□□ -0.55
SF3B1-204ENST00000414963 TAS2R31P59538 309 aa11.59□□□□□ -0.55
SF3B1-204ENST00000414963 HLA-DRB5Q30154 266 aa11.59□□□□□ -0.55
SF3B1-204ENST00000414963 TMEM128Q5BJH2 165 aa11.59□□□□□ -0.55
SF3B1-204ENST00000414963 FAM71F2Q6NXP2 309 aa11.59□□□□□ -0.55
SF3B1-204ENST00000414963 SPNS3Q6ZMD2 512 aa11.59□□□□□ -0.55
SF3B1-204ENST00000414963 Q6ZNX1 250 aa11.59□□□□□ -0.55
SF3B1-204ENST00000414963 ZNF833PQ6ZTB9 187 aa11.59□□□□□ -0.55
SF3B1-204ENST00000414963 KCTD9Q7L273 389 aa11.59□□□□□ -0.55
SF3B1-204ENST00000414963 ADAD2Q8NCV1 583 aaKnown RBP11.59□□□□□ -0.55
SF3B1-204ENST00000414963 OR10X1Q8NGY0 326 aa11.59□□□□□ -0.55
SF3B1-204ENST00000414963 TMEM230Q96A57 120 aa11.59□□□□□ -0.55
SF3B1-204ENST00000414963 C5orf30Q96GV9 206 aa11.59□□□□□ -0.55
SF3B1-204ENST00000414963 SLC2A9Q9NRM0 540 aa11.59□□□□□ -0.55
SF3B1-204ENST00000414963 SDHAF2Q9NX18 166 aa11.59□□□□□ -0.55
SF3B1-204ENST00000414963 AMMECR1Q9Y4X0 333 aaPredicted RBP11.59□□□□□ -0.55
SF3B1-204ENST00000414963 OTOGQ6ZRI0 2925 aa11.58□□□□□ -0.56
SF3B1-204ENST00000414963 SAA2-SAA4A0A096LPE2 208 aa11.58□□□□□ -0.56
SF3B1-204ENST00000414963 MPPED1O15442 326 aa11.58□□□□□ -0.56
SF3B1-204ENST00000414963 PRAF2O60831 178 aa11.58□□□□□ -0.56
SF3B1-204ENST00000414963 PGLYRP1O75594 196 aaPredicted RBP11.58□□□□□ -0.56
SF3B1-204ENST00000414963 DHFRP00374 187 aa11.58□□□□□ -0.56
SF3B1-204ENST00000414963 SAA2P0DJI9 122 aaPredicted RBP11.58□□□□□ -0.56
SF3B1-204ENST00000414963 VSIG10L2P0DP72 767 aa11.58□□□□□ -0.56
SF3B1-204ENST00000414963 ANXA7P20073 488 aaKnown RBP11.58□□□□□ -0.56
SF3B1-204ENST00000414963 IL3RAP26951 378 aa11.58□□□□□ -0.56
SF3B1-204ENST00000414963 PIGPP57054 158 aa11.58□□□□□ -0.56
SF3B1-204ENST00000414963 ABCA11PQ4W5N1 156 aa11.58□□□□□ -0.56
SF3B1-204ENST00000414963 MIDNQ504T8 468 aa11.58□□□□□ -0.56
SF3B1-204ENST00000414963 MINOS1Q5TGZ0 78 aa11.58□□□□□ -0.56
SF3B1-204ENST00000414963 ZNF66Q6ZN08 573 aa11.58□□□□□ -0.56
SF3B1-204ENST00000414963 TMED4Q7Z7H5 227 aa11.58□□□□□ -0.56
SF3B1-204ENST00000414963 LYG1Q8N1E2 194 aa11.58□□□□□ -0.56
SF3B1-204ENST00000414963 CCDC71LQ8N9Z2 235 aa11.58□□□□□ -0.56
SF3B1-204ENST00000414963 OR4P4Q8NGL7 312 aa11.58□□□□□ -0.56
SF3B1-204ENST00000414963 HSD17B10Q99714 261 aaKnown RBP11.58□□□□□ -0.56
SF3B1-204ENST00000414963 ZNRD1Q9P1U0 126 aa11.58□□□□□ -0.56
SF3B1-204ENST00000414963 KCNS2Q9ULS6 477 aa11.58□□□□□ -0.56
SF3B1-204ENST00000414963 MINOS1-NBL1R4GNA1 71 aa11.58□□□□□ -0.56
SF3B1-204ENST00000414963 FLNAP21333 2647 aaKnown RBP11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 59.5 ms