RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 BCL2L10Q9HD36 194 aa11.72□□□□□ -0.53
CCDC88A-204ENST00000413716 A0A1W2PR80 420 aa11.72□□□□□ -0.53
CCDC88A-204ENST00000413716 SHISA7A6NL88 538 aa11.72□□□□□ -0.53
CCDC88A-204ENST00000413716 SRD5A2P31213 254 aa11.72□□□□□ -0.53
CCDC88A-204ENST00000413716 SNRPD3P62318 126 aaKnown RBP11.72□□□□□ -0.53
CCDC88A-204ENST00000413716 J3QR06 171 aa11.72□□□□□ -0.53
CCDC88A-204ENST00000413716 SRIP30626 198 aa11.72□□□□□ -0.53
CCDC88A-204ENST00000413716 RNF122Q9H9V4 155 aa11.72□□□□□ -0.53
CCDC88A-204ENST00000413716 ZNF275Q9NSD4 429 aaPredicted RBP11.72□□□□□ -0.53
CCDC88A-204ENST00000413716 SLIRPQ9GZT3 109 aaKnown RBP11.72□□□□□ -0.53
CCDC88A-204ENST00000413716 ANKRD20A5PA0PJZ0 165 aa11.72□□□□□ -0.53
CCDC88A-204ENST00000413716 BHLHA15Q7RTS1 189 aaPredicted RBP11.72□□□□□ -0.53
CCDC88A-204ENST00000413716 MRGPRX3Q96LB0 322 aa11.72□□□□□ -0.53
CCDC88A-204ENST00000413716 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11.71□□□□□ -0.53
CCDC88A-204ENST00000413716 ASPDHA6ND91 283 aa11.71□□□□□ -0.53
CCDC88A-204ENST00000413716 ZFPL1O95159 310 aa11.71□□□□□ -0.53
CCDC88A-204ENST00000413716 GPX1P07203 203 aa11.71□□□□□ -0.53
CCDC88A-204ENST00000413716 FAM53BQ14153 422 aa11.71□□□□□ -0.53
CCDC88A-204ENST00000413716 FOXB2Q5VYV0 432 aa11.71□□□□□ -0.53
CCDC88A-204ENST00000413716 ZBTB34Q8NCN2 500 aa11.71□□□□□ -0.53
CCDC88A-204ENST00000413716 NDUFB4O95168 129 aa11.71□□□□□ -0.53
CCDC88A-204ENST00000413716 TCTN3Q6NUS6 607 aa11.71□□□□□ -0.53
CCDC88A-204ENST00000413716 EAF1Q96JC9 268 aaPredicted RBP11.71□□□□□ -0.53
CCDC88A-204ENST00000413716 MS4A6AQ9H2W1 248 aa11.71□□□□□ -0.53
CCDC88A-204ENST00000413716 C7orf66A4D0T2 115 aa11.71□□□□□ -0.53
CCDC88A-204ENST00000413716 NPIPB8E9PQR5 432 aa11.71□□□□□ -0.53
CCDC88A-204ENST00000413716 NPIPB9F8W1W9 429 aa11.71□□□□□ -0.53
CCDC88A-204ENST00000413716 NPIPB7O75200 414 aa11.71□□□□□ -0.53
CCDC88A-204ENST00000413716 FFAR1O14842 300 aa11.71□□□□□ -0.54
CCDC88A-204ENST00000413716 KLF9Q13886 244 aaPredicted RBP11.71□□□□□ -0.54
CCDC88A-204ENST00000413716 AGERQ15109 404 aa11.71□□□□□ -0.54
CCDC88A-204ENST00000413716 C9orf62Q8N4C0 152 aa11.71□□□□□ -0.54
CCDC88A-204ENST00000413716 OR13H1Q8NG92 308 aa11.71□□□□□ -0.54
CCDC88A-204ENST00000413716 GGTLC3B5MD39 225 aa11.71□□□□□ -0.54
CCDC88A-204ENST00000413716 C10orf111Q8N326 155 aa11.71□□□□□ -0.54
CCDC88A-204ENST00000413716 HEXA-AS1Q9H8Q6 139 aa11.71□□□□□ -0.54
CCDC88A-204ENST00000413716 TBC1D29Q9UFV1 150 aa11.71□□□□□ -0.54
CCDC88A-204ENST00000413716 CYSLTR1Q9Y271 337 aa11.71□□□□□ -0.54
CCDC88A-204ENST00000413716 CYB5R2Q6BCY4 276 aa11.7□□□□□ -0.54
CCDC88A-204ENST00000413716 MRGPRX1Q96LB2 322 aa11.7□□□□□ -0.54
CCDC88A-204ENST00000413716 SSC5DA1L4H1 1573 aa11.7□□□□□ -0.54
CCDC88A-204ENST00000413716 DPRXA6NFQ7 191 aa11.7□□□□□ -0.54
CCDC88A-204ENST00000413716 TGFAP01135 160 aa11.7□□□□□ -0.54
CCDC88A-204ENST00000413716 CD3EP07766 207 aa11.7□□□□□ -0.54
CCDC88A-204ENST00000413716 HOXD3P31249 432 aaPredicted RBP11.7□□□□□ -0.54
CCDC88A-204ENST00000413716 MMDQ15546 238 aa11.7□□□□□ -0.54
CCDC88A-204ENST00000413716 MRAPQ8TCY5 172 aa11.7□□□□□ -0.54
CCDC88A-204ENST00000413716 COL2A1P02458 1487 aaPredicted RBP11.7□□□□□ -0.54
CCDC88A-204ENST00000413716 CRPP02741 224 aa11.7□□□□□ -0.54
CCDC88A-204ENST00000413716 PRICKLE4Q2TBC4 344 aa11.7□□□□□ -0.54
CCDC88A-204ENST00000413716 OR52M1Q8NGK5 317 aa11.7□□□□□ -0.54
CCDC88A-204ENST00000413716 MRPL20Q9BYC9 149 aaKnown RBP11.7□□□□□ -0.54
CCDC88A-204ENST00000413716 PPYP01298 95 aa11.7□□□□□ -0.54
CCDC88A-204ENST00000413716 TMEM52BQ4KMG9 183 aa11.7□□□□□ -0.54
CCDC88A-204ENST00000413716 GVQW1Q8N7I0 195 aa11.7□□□□□ -0.54
CCDC88A-204ENST00000413716 ELF5Q9UKW6 265 aaPredicted RBP11.7□□□□□ -0.54
CCDC88A-204ENST00000413716 PXMP4Q9Y6I8 212 aa11.7□□□□□ -0.54
CCDC88A-204ENST00000413716 SKP2Q13309 424 aa11.7□□□□□ -0.54
CCDC88A-204ENST00000413716 SPNS2Q8IVW8 549 aa11.7□□□□□ -0.54
CCDC88A-204ENST00000413716 MRPL43Q8N983 215 aaKnown RBP11.7□□□□□ -0.54
CCDC88A-204ENST00000413716 VN1R2Q8NFZ6 395 aa11.7□□□□□ -0.54
CCDC88A-204ENST00000413716 MPC1Q9Y5U8 109 aa11.7□□□□□ -0.54
CCDC88A-204ENST00000413716 TOGARAM1Q9Y4F4 1720 aa11.7□□□□□ -0.54
CCDC88A-204ENST00000413716 BIVMQ86UB2 503 aa11.7□□□□□ -0.54
CCDC88A-204ENST00000413716 SLC25A15Q9Y619 301 aa11.7□□□□□ -0.54
CCDC88A-204ENST00000413716 DYSFO75923 2080 aa11.7□□□□□ -0.54
CCDC88A-204ENST00000413716 C1orf220Q5T0J3 134 aa11.7□□□□□ -0.54
CCDC88A-204ENST00000413716 MEX3AA1L020 520 aaKnown RBP11.7□□□□□ -0.54
CCDC88A-204ENST00000413716 GGACTQ9BVM4 153 aa11.7□□□□□ -0.54
CCDC88A-204ENST00000413716 K7N7A8 449 aa11.69□□□□□ -0.54
CCDC88A-204ENST00000413716 SDHCQ99643 169 aaPredicted RBP11.69□□□□□ -0.54
CCDC88A-204ENST00000413716 C6orf106Q9H6K1 298 aaPredicted RBP11.69□□□□□ -0.54
CCDC88A-204ENST00000413716 PLSCR2Q9NRY7 297 aa11.69□□□□□ -0.54
CCDC88A-204ENST00000413716 QTRT1Q9BXR0 403 aaKnown RBP11.69□□□□□ -0.54
CCDC88A-204ENST00000413716 MS4A7Q9GZW8 240 aaPredicted RBP11.69□□□□□ -0.54
CCDC88A-204ENST00000413716 OR2A4O95047 310 aa11.69□□□□□ -0.54
CCDC88A-204ENST00000413716 ST6GAL2Q96JF0 529 aa11.69□□□□□ -0.54
CCDC88A-204ENST00000413716 OR2A7Q96R45 310 aa11.69□□□□□ -0.54
CCDC88A-204ENST00000413716 TRBV20OR9-2A0A075B6H5 130 aa11.69□□□□□ -0.54
CCDC88A-204ENST00000413716 TMEM202A6NGA9 273 aa11.69□□□□□ -0.54
CCDC88A-204ENST00000413716 ATP5LO75964 103 aa11.69□□□□□ -0.54
CCDC88A-204ENST00000413716 NAAAQ02083 359 aa11.69□□□□□ -0.54
CCDC88A-204ENST00000413716 RIMKLAQ8IXN7 391 aa11.69□□□□□ -0.54
CCDC88A-204ENST00000413716 FAM216AQ8WUB2 273 aa11.69□□□□□ -0.54
CCDC88A-204ENST00000413716 K7ESM1 405 aa11.69□□□□□ -0.54
CCDC88A-204ENST00000413716 PQLC2Q6ZP29 291 aa11.69□□□□□ -0.54
CCDC88A-204ENST00000413716 NPVFQ9HCQ7 196 aa11.69□□□□□ -0.54
CCDC88A-204ENST00000413716 TNFRSF18Q9Y5U5 241 aa11.69□□□□□ -0.54
CCDC88A-204ENST00000413716 NKX2-6A6NCS4 301 aa11.69□□□□□ -0.54
CCDC88A-204ENST00000413716 ADRA2AP08913 450 aa11.69□□□□□ -0.54
CCDC88A-204ENST00000413716 GABRG2P18507 467 aa11.69□□□□□ -0.54
CCDC88A-204ENST00000413716 PCMT1P22061 227 aa11.69□□□□□ -0.54
CCDC88A-204ENST00000413716 STARD6P59095 220 aa11.69□□□□□ -0.54
CCDC88A-204ENST00000413716 TCRBV5S2A0A599 114 aa11.68□□□□□ -0.54
CCDC88A-204ENST00000413716 CTDSPLO15194 276 aa11.68□□□□□ -0.54
CCDC88A-204ENST00000413716 TFPI2P48307 235 aa11.68□□□□□ -0.54
CCDC88A-204ENST00000413716 GAGE2EQ4V326 116 aa11.68□□□□□ -0.54
CCDC88A-204ENST00000413716 GAGE2DQ9UEU5 116 aa11.68□□□□□ -0.54
CCDC88A-204ENST00000413716 TUBD1Q9UJT1 453 aa11.68□□□□□ -0.54
CCDC88A-204ENST00000413716 IGHV3-21A0A0B4J1V1 117 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms