RNA–Protein interactions for RNA: ENST00000406019.1

HMGB1P13-201, Transcript of high mobility group box 1 pseudogene 13, humanhuman

BASIC

Gene HMGB1P13, Length 642 nt, Biotype processed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P13-201ENST00000406019 MAP3K1Q13233 1512 aa3.12□□□□□ -1.91
HMGB1P13-201ENST00000406019 A0A087WX48 190 aa3.11□□□□□ -1.91
HMGB1P13-201ENST00000406019 IGHV6-1A0A0B4J1U7 121 aa3.11□□□□□ -1.91
HMGB1P13-201ENST00000406019 EXOC1LA0A1B0GW35 172 aa3.11□□□□□ -1.91
HMGB1P13-201ENST00000406019 A0A1W2PP18 115 aa3.11□□□□□ -1.91
HMGB1P13-201ENST00000406019 TRAPPC2LH3BP13 241 aa3.11□□□□□ -1.91
HMGB1P13-201ENST00000406019 MFSD11O43934 449 aa3.11□□□□□ -1.91
HMGB1P13-201ENST00000406019 GNG7O60262 68 aa3.11□□□□□ -1.91
HMGB1P13-201ENST00000406019 CNMDO75829 334 aa3.11□□□□□ -1.91
HMGB1P13-201ENST00000406019 OR2B3O76000 313 aa3.11□□□□□ -1.91
HMGB1P13-201ENST00000406019 IFNA1P01562 189 aa3.11□□□□□ -1.91
HMGB1P13-201ENST00000406019 IGHV3-11P01762 117 aa3.11□□□□□ -1.91
HMGB1P13-201ENST00000406019 STC1P52823 247 aa3.11□□□□□ -1.91
HMGB1P13-201ENST00000406019 TPI1P60174 286 aa3.11□□□□□ -1.91
HMGB1P13-201ENST00000406019 EMX1Q04741 257 aaPredicted RBP3.11□□□□□ -1.91
HMGB1P13-201ENST00000406019 BIKQ13323 160 aa3.11□□□□□ -1.91
HMGB1P13-201ENST00000406019 RSU1Q15404 277 aa3.11□□□□□ -1.91
HMGB1P13-201ENST00000406019 TSNQ15631 228 aaKnown RBP3.11□□□□□ -1.91
HMGB1P13-201ENST00000406019 CEACAM16Q2WEN9 425 aa3.11□□□□□ -1.91
HMGB1P13-201ENST00000406019 TMEM128Q5BJH2 165 aa3.11□□□□□ -1.91
HMGB1P13-201ENST00000406019 RNASE13Q5GAN3 156 aaKnown RBP3.11□□□□□ -1.91
HMGB1P13-201ENST00000406019 FAM78BQ5VT40 261 aa3.11□□□□□ -1.91
HMGB1P13-201ENST00000406019 TMEM215Q68D42 235 aa3.11□□□□□ -1.91
HMGB1P13-201ENST00000406019 FAM71E1Q6IPT2 247 aa3.11□□□□□ -1.91
HMGB1P13-201ENST00000406019 HAGHLQ6PII5 290 aaPredicted RBP3.11□□□□□ -1.91
HMGB1P13-201ENST00000406019 Q6ZR03 302 aa3.11□□□□□ -1.91
HMGB1P13-201ENST00000406019 LINC01551Q86U37 167 aa3.11□□□□□ -1.91
HMGB1P13-201ENST00000406019 MDP1Q86V88 176 aa3.11□□□□□ -1.91
HMGB1P13-201ENST00000406019 LRRC28Q86X40 367 aaPredicted RBP3.11□□□□□ -1.91
HMGB1P13-201ENST00000406019 NIT1Q86X76 327 aa3.11□□□□□ -1.91
HMGB1P13-201ENST00000406019 LRRC25Q8N386 305 aaPredicted RBP3.11□□□□□ -1.91
HMGB1P13-201ENST00000406019 MUC15Q8N387 334 aa3.11□□□□□ -1.91
HMGB1P13-201ENST00000406019 TMEM86BQ8N661 226 aa3.11□□□□□ -1.91
HMGB1P13-201ENST00000406019 OR4M1Q8NGD0 313 aa3.11□□□□□ -1.91
HMGB1P13-201ENST00000406019 OR51Q1Q8NH59 317 aa3.11□□□□□ -1.91
HMGB1P13-201ENST00000406019 APOBEC3DQ96AK3 386 aaPredicted RBP3.11□□□□□ -1.91
HMGB1P13-201ENST00000406019 LINC00477Q96M19 166 aa3.11□□□□□ -1.91
HMGB1P13-201ENST00000406019 TAPBPLQ9BX59 468 aa3.11□□□□□ -1.91
HMGB1P13-201ENST00000406019 SNHG12Q9BXW3 62 aa3.11□□□□□ -1.91
HMGB1P13-201ENST00000406019 SLC17A9Q9BYT1 436 aa3.11□□□□□ -1.91
HMGB1P13-201ENST00000406019 NXF2Q9GZY0 626 aaKnown RBP3.11□□□□□ -1.91
HMGB1P13-201ENST00000406019 TXNIPQ9H3M7 391 aa3.11□□□□□ -1.91
HMGB1P13-201ENST00000406019 COPZ2Q9P299 210 aa3.11□□□□□ -1.91
HMGB1P13-201ENST00000406019 ANXA10Q9UJ72 324 aa3.11□□□□□ -1.91
HMGB1P13-201ENST00000406019 SNX12Q9UMY4 172 aa3.11□□□□□ -1.91
HMGB1P13-201ENST00000406019 BAIAP2Q9UQB8 552 aa3.11□□□□□ -1.91
HMGB1P13-201ENST00000406019 HSPB11Q9Y547 144 aa3.11□□□□□ -1.91
HMGB1P13-201ENST00000406019 NACAE9PAV3 2078 aa3.11□□□□□ -1.91
HMGB1P13-201ENST00000406019 YEATS2Q9ULM3 1422 aa3.1□□□□□ -1.91
HMGB1P13-201ENST00000406019 NUP153P49790 1475 aaKnown RBP3.1□□□□□ -1.91
HMGB1P13-201ENST00000406019 LMTK2Q8IWU2 1503 aa3.1□□□□□ -1.91
HMGB1P13-201ENST00000406019 TMEM223A0PJW6 202 aa3.1□□□□□ -1.91
HMGB1P13-201ENST00000406019 C5orf63A6NC05 138 aa3.1□□□□□ -1.91
HMGB1P13-201ENST00000406019 GMNCA6NCL1 334 aa3.1□□□□□ -1.91
HMGB1P13-201ENST00000406019 SIGLEC16A6NMB1 481 aa3.1□□□□□ -1.91
HMGB1P13-201ENST00000406019 I3L521 148 aa3.1□□□□□ -1.91
HMGB1P13-201ENST00000406019 M0R1X1 148 aa3.1□□□□□ -1.91
HMGB1P13-201ENST00000406019 CCL25O15444 150 aa3.1□□□□□ -1.91
HMGB1P13-201ENST00000406019 FOXH1O75593 365 aa3.1□□□□□ -1.91
HMGB1P13-201ENST00000406019 GADD45GO95257 159 aa3.1□□□□□ -1.91
HMGB1P13-201ENST00000406019 KDELR1P24390 212 aa3.1□□□□□ -1.91
HMGB1P13-201ENST00000406019 RPL12P30050 165 aaKnown RBP3.1□□□□□ -1.91
HMGB1P13-201ENST00000406019 REG1BP48304 166 aa3.1□□□□□ -1.91
HMGB1P13-201ENST00000406019 RPS20P60866 119 aaKnown RBP3.1□□□□□ -1.91
HMGB1P13-201ENST00000406019 TBPL1P62380 186 aa3.1□□□□□ -1.91
HMGB1P13-201ENST00000406019 SNRNP35Q16560 246 aaKnown RBP3.1□□□□□ -1.91
HMGB1P13-201ENST00000406019 FBXL19-AS1Q494R0 122 aa3.1□□□□□ -1.91
HMGB1P13-201ENST00000406019 TMEM78Q5T7P6 136 aa3.1□□□□□ -1.91
HMGB1P13-201ENST00000406019 Q5W150 140 aa3.1□□□□□ -1.91
HMGB1P13-201ENST00000406019 FAM19A5Q7Z5A7 132 aaPredicted RBP3.1□□□□□ -1.91
HMGB1P13-201ENST00000406019 MRPL52Q86TS9 123 aaKnown RBP3.1□□□□□ -1.91
HMGB1P13-201ENST00000406019 DOLPP1Q86YN1 238 aa3.1□□□□□ -1.91
HMGB1P13-201ENST00000406019 BAP18Q8IXM2 172 aa3.1□□□□□ -1.91
HMGB1P13-201ENST00000406019 UBALD2Q8IYN6 164 aa3.1□□□□□ -1.91
HMGB1P13-201ENST00000406019 OR4C13Q8NGP0 309 aa3.1□□□□□ -1.91
HMGB1P13-201ENST00000406019 OR13G1Q8NGZ3 307 aa3.1□□□□□ -1.91
HMGB1P13-201ENST00000406019 OR1L1Q8NH94 360 aa3.1□□□□□ -1.91
HMGB1P13-201ENST00000406019 GALMQ96C23 342 aa3.1□□□□□ -1.91
HMGB1P13-201ENST00000406019 MRAP2Q96G30 205 aa3.1□□□□□ -1.91
HMGB1P13-201ENST00000406019 GINS3Q9BRX5 216 aa3.1□□□□□ -1.91
HMGB1P13-201ENST00000406019 PDCD10Q9BUL8 212 aa3.1□□□□□ -1.91
HMGB1P13-201ENST00000406019 MS4A6AQ9H2W1 248 aa3.1□□□□□ -1.91
HMGB1P13-201ENST00000406019 ZNF355PQ9NSJ1 428 aa3.1□□□□□ -1.91
HMGB1P13-201ENST00000406019 C14orf105Q9NVL8 296 aa3.1□□□□□ -1.91
HMGB1P13-201ENST00000406019 TMEM14AQ9Y6G1 99 aa3.1□□□□□ -1.91
HMGB1P13-201ENST00000406019 PTPRTO14522 1441 aa3.1□□□□□ -1.91
HMGB1P13-201ENST00000406019 CLIP1P30622 1438 aa3.1□□□□□ -1.91
HMGB1P13-201ENST00000406019 TNS2Q63HR2 1409 aa3.1□□□□□ -1.91
HMGB1P13-201ENST00000406019 NLRP1Q9C000 1473 aa3.09□□□□□ -1.91
HMGB1P13-201ENST00000406019 CACNA1SQ13698 1873 aa3.09□□□□□ -1.91
HMGB1P13-201ENST00000406019 FAM135AQ9P2D6 1515 aa3.09□□□□□ -1.91
HMGB1P13-201ENST00000406019 BAZ1AQ9NRL2 1556 aaPredicted RBP3.09□□□□□ -1.91
HMGB1P13-201ENST00000406019 AHDC1Q5TGY3 1603 aaPredicted RBP3.09□□□□□ -1.91
HMGB1P13-201ENST00000406019 NUP214P35658 2090 aaPredicted RBP3.09□□□□□ -1.91
HMGB1P13-201ENST00000406019 ANKRD12Q6UB98 2062 aa3.09□□□□□ -1.91
HMGB1P13-201ENST00000406019 IGLV4-69A0A075B6H9 119 aa3.09□□□□□ -1.91
HMGB1P13-201ENST00000406019 IGHV7-4-1A0A0J9YVY3 117 aa3.09□□□□□ -1.91
HMGB1P13-201ENST00000406019 OR5H1A6NKK0 313 aa3.09□□□□□ -1.91
HMGB1P13-201ENST00000406019 F6UZH7 168 aa3.09□□□□□ -1.91
HMGB1P13-201ENST00000406019 NDUFS5O43920 106 aa3.09□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms